hsd_id_Theobroma_cacao_1	XP_007008706.2; XP_007039941.2; XP_017972617.1; XP_017972737.1	496; 499; 489; 489	Pfam	PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_2	XP_007008714.1; XP_017973438.1; XP_007014834.2; XP_017971956.1	609; 598; 620; 631	Pfam	PF00854; PF00854; PF00854; PF00854	POT family; POT family; POT family; POT family	IPR000109; IPR000109; IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_3	XP_007008717.2; XP_007039568.1	394; 404	Pfam	PF13793, PF14572; PF14572, PF13793	N-terminal domain of ribose phosphate pyrophosphokinase, Phosphoribosyl synthetase-associated domain; Phosphoribosyl synthetase-associated domain, N-terminal domain of ribose phosphate pyrophosphokinase	IPR029099, IPR005946; IPR005946, IPR029099	Ribose-phosphate pyrophosphokinase, N-terminal domain, Ribose-phosphate pyrophosphokinase; Ribose-phosphate pyrophosphokinase, Ribose-phosphate pyrophosphokinase, N-terminal domain
hsd_id_Theobroma_cacao_4	XP_007008719.1; XP_007041825.2	424; 408	Pfam	PF00400, PF12265; PF00400, PF12265	WD domain, G-beta repeat, Histone-binding protein RBBP4 or subunit C of CAF1 complex; WD domain, G-beta repeat, Histone-binding protein RBBP4 or subunit C of CAF1 complex	IPR001680, IPR022052; IPR001680, IPR022052	WD40 repeat, Histone-binding protein RBBP4, N-terminal; WD40 repeat, Histone-binding protein RBBP4, N-terminal
hsd_id_Theobroma_cacao_5	XP_007008721.2; XP_017980671.1; XP_017980610.1; XP_007029920.2; XP_007050143.2	1511; 1503; 1503; 1502; 1539	Pfam	PF00005, PF00664; PF00664, PF00005; PF00005, PF00664; PF00005, PF00664; PF00005, PF00664	ABC transporter, ABC transporter transmembrane region; ABC transporter transmembrane region, ABC transporter; ABC transporter, ABC transporter transmembrane region; ABC transporter, ABC transporter transmembrane region; ABC transporter, ABC transporter transmembrane region	IPR003439, IPR011527; IPR011527, IPR003439; IPR003439, IPR011527; IPR003439, IPR011527; IPR003439, IPR011527	ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter type 1, transmembrane domain, ABC transporter-like, ATP-binding domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain
hsd_id_Theobroma_cacao_6	XP_007008729.1; XP_007041186.2; XP_017970817.1; XP_017970820.1; XP_017985355.1; XP_017983630.1	623; 620; 620; 620; 620; 618	Pfam	PF12076, PF04116; PF12076, PF04116; PF12076, PF04116; PF12076, PF04116; PF12076, PF04116; PF04116, PF12076	WAX2 C-terminal domain, Fatty acid hydroxylase superfamily; WAX2 C-terminal domain, Fatty acid hydroxylase superfamily; WAX2 C-terminal domain, Fatty acid hydroxylase superfamily; WAX2 C-terminal domain, Fatty acid hydroxylase superfamily; WAX2 C-terminal domain, Fatty acid hydroxylase superfamily; Fatty acid hydroxylase superfamily, WAX2 C-terminal domain	IPR021940, IPR006694; IPR021940, IPR006694; IPR021940, IPR006694; IPR021940, IPR006694; IPR021940, IPR006694; IPR006694, IPR021940	Uncharacterised domain Wax2, C-terminal, Fatty acid hydroxylase; Uncharacterised domain Wax2, C-terminal, Fatty acid hydroxylase; Uncharacterised domain Wax2, C-terminal, Fatty acid hydroxylase; Uncharacterised domain Wax2, C-terminal, Fatty acid hydroxylase; Uncharacterised domain Wax2, C-terminal, Fatty acid hydroxylase; Fatty acid hydroxylase, Uncharacterised domain Wax2, C-terminal
hsd_id_Theobroma_cacao_7	XP_007008732.1; XP_007045886.2	184; 189	Pfam	PF00861; PF00861	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast; Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast	IPR005484; IPR005484	Ribosomal protein L18; Ribosomal protein L18
hsd_id_Theobroma_cacao_8	XP_007008735.1; XP_017984078.1; XP_017973038.1	208; 212; 255	Pfam	PF00406; PF00406; PF00406	Adenylate kinase; Adenylate kinase; Adenylate kinase	-; -; -	-; -; -
hsd_id_Theobroma_cacao_9	XP_007008738.2; XP_007051888.1	628; 603	Pfam	PF03949, PF00390; PF00390, PF03949	Malic enzyme, NAD binding domain, Malic enzyme, N-terminal domain; Malic enzyme, N-terminal domain, Malic enzyme, NAD binding domain	IPR012302, IPR012301; IPR012301, IPR012302	Malic enzyme, NAD-binding, Malic enzyme, N-terminal domain; Malic enzyme, N-terminal domain, Malic enzyme, NAD-binding
hsd_id_Theobroma_cacao_10	XP_007008757.1; XP_007028626.1; XP_017981296.1; XP_007012819.1	530; 544; 537; 524	Pfam	PF09265, PF01565; PF09265, PF01565; PF09265, PF01565; PF01565, PF09265	Cytokinin dehydrogenase 1, FAD and cytokinin binding, FAD binding domain; Cytokinin dehydrogenase 1, FAD and cytokinin binding, FAD binding domain; Cytokinin dehydrogenase 1, FAD and cytokinin binding, FAD binding domain; FAD binding domain, Cytokinin dehydrogenase 1, FAD and cytokinin binding	IPR015345, IPR006094; IPR015345, IPR006094; IPR015345, IPR006094; IPR006094, IPR015345	Cytokinin dehydrogenase 1, FAD/cytokinin binding domain, FAD linked oxidase, N-terminal; Cytokinin dehydrogenase 1, FAD/cytokinin binding domain, FAD linked oxidase, N-terminal; Cytokinin dehydrogenase 1, FAD/cytokinin binding domain, FAD linked oxidase, N-terminal; FAD linked oxidase, N-terminal, Cytokinin dehydrogenase 1, FAD/cytokinin binding domain
hsd_id_Theobroma_cacao_11	XP_007008811.1; XP_017977965.1; XP_007027903.2; XP_007027905.2; XP_017971294.1; XP_007043243.2; XP_007027908.2; XP_017976399.1; XP_017976756.1	283; 276; 277; 281; 275; 271; 274; 271; 268	Pfam	PF13561; PF13561; PF13561; PF13561; PF13561; PF13561; PF13561; PF13561; PF13561	Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase	-; -; -; -; -; -; -; -; -	-; -; -; -; -; -; -; -; -
hsd_id_Theobroma_cacao_12	XP_007008822.2; XP_007008824.2; XP_007008827.2	502; 437; 438	Pfam	PF01490; PF01490; PF01490	Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein	IPR013057; IPR013057; IPR013057	Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain
hsd_id_Theobroma_cacao_13	XP_007008828.2; XP_017984911.1	563; 565	Pfam	PF11204, PF04749; PF04749, PF11204	Protein of unknown function (DUF2985), PLAC8 family; PLAC8 family, Protein of unknown function (DUF2985)	IPR021369, IPR006461; IPR006461, IPR021369	Protein of unknown function DUF2985, PLAC8 motif-containing protein; PLAC8 motif-containing protein, Protein of unknown function DUF2985
hsd_id_Theobroma_cacao_14	XP_007008833.2; XP_017977381.1	157; 144	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_15	XP_007008835.2; XP_007031636.2; XP_017974566.1; XP_017974502.1	335; 334; 250; 183	Pfam	PF00565; PF00565; PF00565; PF00565	Staphylococcal nuclease homologue; Staphylococcal nuclease homologue; Staphylococcal nuclease homologue; Staphylococcal nuclease homologue	IPR016071; IPR016071; IPR016071; IPR016071	Staphylococcal nuclease (SNase-like), OB-fold; Staphylococcal nuclease (SNase-like), OB-fold; Staphylococcal nuclease (SNase-like), OB-fold; Staphylococcal nuclease (SNase-like), OB-fold
hsd_id_Theobroma_cacao_16	XP_007008843.2; XP_017983812.1; XP_007012342.1	514; 510; 489	Pfam	PF13359; PF13359; PF13359	DDE superfamily endonuclease; DDE superfamily endonuclease; DDE superfamily endonuclease	IPR027806; IPR027806; IPR027806	Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain
hsd_id_Theobroma_cacao_17	XP_007008847.2; XP_007026562.2; XP_017982748.1	218; 215; 215	Pfam	PF03208; PF03208; PF03208	PRA1 family protein; PRA1 family protein; PRA1 family protein	IPR004895; IPR004895; IPR004895	Prenylated rab acceptor PRA1; Prenylated rab acceptor PRA1; Prenylated rab acceptor PRA1
hsd_id_Theobroma_cacao_18	XP_007008854.2; XP_007026589.1; XP_017983953.1; XP_007038971.1; XP_007025367.1; XP_007040497.2; XP_007039500.1; XP_007051579.1; XP_007024469.1	215; 218; 187; 190; 165; 193; 217; 186; 192	Pfam	PF10604; PF10604; PF10604; PF10604; PF10604; PF10604; PF10604; PF10604; PF10604	Polyketide cyclase / dehydrase and lipid transport; Polyketide cyclase / dehydrase and lipid transport; Polyketide cyclase / dehydrase and lipid transport; Polyketide cyclase / dehydrase and lipid transport; Polyketide cyclase / dehydrase and lipid transport; Polyketide cyclase / dehydrase and lipid transport; Polyketide cyclase / dehydrase and lipid transport; Polyketide cyclase / dehydrase and lipid transport; Polyketide cyclase / dehydrase and lipid transport	IPR019587; IPR019587; IPR019587; IPR019587; IPR019587; IPR019587; IPR019587; IPR019587; IPR019587	Polyketide cyclase/dehydrase; Polyketide cyclase/dehydrase; Polyketide cyclase/dehydrase; Polyketide cyclase/dehydrase; Polyketide cyclase/dehydrase; Polyketide cyclase/dehydrase; Polyketide cyclase/dehydrase; Polyketide cyclase/dehydrase; Polyketide cyclase/dehydrase
hsd_id_Theobroma_cacao_19	XP_007008874.1; XP_017983069.1; XP_007024850.1; XP_007022340.2; XP_007015486.2; XP_007009738.1; XP_007011230.1; XP_007031563.2; XP_017972365.1; XP_007008910.1; XP_017981145.1; XP_007017045.2; XP_007051513.1; XP_017976329.1; XP_007052037.2; XP_017972601.1; XP_007050346.1; XP_007030005.1; XP_017973502.1; XP_007009269.1; XP_017969845.1; XP_017969524.1; XP_007025493.2; XP_007050014.2	169; 164; 171; 171; 246; 220; 219; 172; 187; 172; 151; 222; 181; 248; 203; 150; 204; 236; 234; 227; 238; 317; 257; 223	Pfam	PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195; PF03195	Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain	IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883	Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB
hsd_id_Theobroma_cacao_20	XP_007008875.2; XP_007026593.2; XP_007016968.2	270; 269; 266	Pfam	PF00210; PF00210; PF00210	Ferritin-like domain; Ferritin-like domain; Ferritin-like domain	IPR008331; IPR008331; IPR008331	Ferritin/DPS protein domain; Ferritin/DPS protein domain; Ferritin/DPS protein domain
hsd_id_Theobroma_cacao_21	XP_007008895.2; XP_007016945.2	662; 700	Pfam	PF08263, PF07714; PF08263, PF07714	Leucine rich repeat N-terminal domain, Protein tyrosine and serine/threonine kinase; Leucine rich repeat N-terminal domain, Protein tyrosine and serine/threonine kinase	IPR013210, IPR001245; IPR013210, IPR001245	Leucine-rich repeat-containing N-terminal, plant-type, Serine-threonine/tyrosine-protein kinase, catalytic domain; Leucine-rich repeat-containing N-terminal, plant-type, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_22	XP_007008901.2; XP_007021348.2	538; 524	Pfam	PF01103, PF07244; PF07244, PF01103	Omp85 superfamily domain, Surface antigen variable number repeat; Surface antigen variable number repeat, Omp85 superfamily domain	IPR000184, IPR010827; IPR010827, IPR000184	Bacterial surface antigen (D15), POTRA domain, BamA/TamA-like; POTRA domain, BamA/TamA-like, Bacterial surface antigen (D15)
hsd_id_Theobroma_cacao_23	XP_007008911.2; XP_007025374.1	241; 301	Pfam	PF13837; PF13837	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR044822; IPR044822	Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4
hsd_id_Theobroma_cacao_24	XP_007008930.2; XP_007016894.2	392; 397	Pfam	PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_25	XP_007008931.2; XP_007026648.2; XP_007008932.1	156; 174; 99	Pfam	PF00477; PF00477; PF00477	Small hydrophilic plant seed protein; Small hydrophilic plant seed protein; Small hydrophilic plant seed protein	IPR038956; IPR038956; IPR038956	Late embryogenesis abundant protein, LEA_5 subgroup; Late embryogenesis abundant protein, LEA_5 subgroup; Late embryogenesis abundant protein, LEA_5 subgroup
hsd_id_Theobroma_cacao_26	XP_007008947.2; XP_007026674.2; XP_007016081.2	456; 455; 391	Pfam	PF00487, PF11960; PF11960, PF00487; PF11960, PF00487	Fatty acid desaturase, Domain of unknown function (DUF3474); Domain of unknown function (DUF3474), Fatty acid desaturase; Domain of unknown function (DUF3474), Fatty acid desaturase	IPR005804, IPR021863; IPR021863, IPR005804; IPR021863, IPR005804	Fatty acid desaturase domain, Fatty acid desaturase, N-terminal; Fatty acid desaturase, N-terminal, Fatty acid desaturase domain; Fatty acid desaturase, N-terminal, Fatty acid desaturase domain
hsd_id_Theobroma_cacao_27	XP_007008954.2; XP_017977840.1; XP_017979419.1; XP_017979207.1; XP_017983949.1; XP_007012714.1	237; 239; 252; 253; 253; 252	Pfam	PF00628, PF12165; PF00628, PF12165; PF00628, PF12165; PF00628, PF12165; PF12165, PF00628; PF00628, PF12165	PHD-finger, Alfin; PHD-finger, Alfin; PHD-finger, Alfin; PHD-finger, Alfin; Alfin, PHD-finger; PHD-finger, Alfin	IPR019787, IPR021998; IPR019787, IPR021998; IPR019787, IPR021998; IPR019787, IPR021998; IPR021998, IPR019787; IPR019787, IPR021998	Zinc finger, PHD-finger, Alfin, N-terminal; Zinc finger, PHD-finger, Alfin, N-terminal; Zinc finger, PHD-finger, Alfin, N-terminal; Zinc finger, PHD-finger, Alfin, N-terminal; Alfin, N-terminal, Zinc finger, PHD-finger; Zinc finger, PHD-finger, Alfin, N-terminal
hsd_id_Theobroma_cacao_28	XP_007008975.2; XP_007016102.2; XP_007030475.1; XP_007041878.2; XP_007041920.1; XP_007051330.2; XP_007043900.1; XP_007010906.2; XP_007052021.1; XP_007027839.1	221; 207; 174; 224; 173; 258; 258; 191; 160; 164	Pfam	PF00160; PF00160; PF00160; PF00160; PF00160; PF00160; PF00160; PF00160; PF00160; PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	IPR002130; IPR002130; IPR002130; IPR002130; IPR002130; IPR002130; IPR002130; IPR002130; IPR002130; IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
hsd_id_Theobroma_cacao_29	XP_007008976.2; XP_017981938.1; XP_017978871.1; XP_007012687.2	114; 124; 114; 114	Pfam	PF07011; PF07011; PF07011; PF07011	Early Flowering 4 domain; Early Flowering 4 domain; Early Flowering 4 domain; Early Flowering 4 domain	IPR009741; IPR009741; IPR009741; IPR009741	Protein EARLY FLOWERING 4 domain; Protein EARLY FLOWERING 4 domain; Protein EARLY FLOWERING 4 domain; Protein EARLY FLOWERING 4 domain
hsd_id_Theobroma_cacao_30	XP_007008988.1; XP_007026708.2	256; 252	Pfam	PF13472; PF13472	GDSL-like Lipase/Acylhydrolase family; GDSL-like Lipase/Acylhydrolase family	IPR013830; IPR013830	SGNH hydrolase-type esterase domain; SGNH hydrolase-type esterase domain
hsd_id_Theobroma_cacao_31	XP_007009011.1; XP_007026721.1; XP_007018068.1; XP_007046509.1; XP_007043200.2	165; 172; 147; 145; 210	Pfam	PF00505; PF00505; PF00505; PF00505; PF00505	HMG (high mobility group) box; HMG (high mobility group) box; HMG (high mobility group) box; HMG (high mobility group) box; HMG (high mobility group) box	IPR009071; IPR009071; IPR009071; IPR009071; IPR009071	High mobility group box domain; High mobility group box domain; High mobility group box domain; High mobility group box domain; High mobility group box domain
hsd_id_Theobroma_cacao_32	XP_007009013.2; XP_007026729.1	277; 284	Pfam	PF00504; PF00504	Chlorophyll A-B binding protein; Chlorophyll A-B binding protein	IPR022796; IPR022796	Chlorophyll A-B binding protein; Chlorophyll A-B binding protein
hsd_id_Theobroma_cacao_33	XP_007009023.2; XP_007026736.2	591; 556	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_34	XP_007009024.2; XP_017977260.1; XP_007043562.2; XP_007025678.1	266; 298; 355; 333	Pfam	PF01086; PF01086; PF01086; PF01086	Clathrin light chain; Clathrin light chain; Clathrin light chain; Clathrin light chain	IPR000996; IPR000996; IPR000996; IPR000996	Clathrin light chain; Clathrin light chain; Clathrin light chain; Clathrin light chain
hsd_id_Theobroma_cacao_35	XP_007009031.1; XP_007016128.1	143; 145	Pfam	PF00169; PF00169	PH domain; PH domain	IPR001849; IPR001849	Pleckstrin homology domain; Pleckstrin homology domain
hsd_id_Theobroma_cacao_36	XP_007009047.1; XP_007026762.2; XP_007041889.2; XP_007018988.2	474; 480; 492; 465	Pfam	PF01490; PF01490; PF01490; PF01490	Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein	IPR013057; IPR013057; IPR013057; IPR013057	Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain
hsd_id_Theobroma_cacao_37	XP_007009059.1; XP_007040269.1; XP_007051783.1; XP_007026768.1; XP_007041804.1; XP_007027328.1; XP_007016740.2; XP_007046620.1; XP_017984280.1	289; 287; 286; 287; 278; 283; 289; 280; 239	Pfam	PF00230; PF00230; PF00230; PF00230; PF00230; PF00230; PF00230; PF00230; PF00230	Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein	IPR000425; IPR000425; IPR000425; IPR000425; IPR000425; IPR000425; IPR000425; IPR000425; IPR000425	Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein
hsd_id_Theobroma_cacao_38	XP_007009062.2; XP_017985287.1; XP_017985288.1; XP_007009070.2	363; 365; 361; 364	Pfam	PF03492; PF03492; PF03492; PF03492	SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase	IPR005299; IPR005299; IPR005299; IPR005299	SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase
hsd_id_Theobroma_cacao_39	XP_007009080.2; XP_007035770.2	286; 287	Pfam	PF13012, PF01398; PF13012, PF01398	Maintenance of mitochondrial structure and function, JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Maintenance of mitochondrial structure and function, JAB1/Mov34/MPN/PAD-1 ubiquitin protease	IPR024969, IPR000555; IPR024969, IPR000555	Rpn11/EIF3F, C-terminal, JAB1/MPN/MOV34 metalloenzyme domain; Rpn11/EIF3F, C-terminal, JAB1/MPN/MOV34 metalloenzyme domain
hsd_id_Theobroma_cacao_40	XP_007009082.1; XP_007016457.1; XP_007016605.2; XP_007046708.1; XP_007017177.1; XP_017970244.1; XP_007036796.2; XP_017978210.1; XP_017976725.1	197; 259; 250; 284; 215; 330; 357; 376; 284	Pfam	PF00046; PF00046; PF00046; PF00046; PF00046; PF00046; PF00046; PF00046; PF00046	Homeodomain; Homeodomain; Homeodomain; Homeodomain; Homeodomain; Homeodomain; Homeodomain; Homeodomain; Homeodomain	IPR001356; IPR001356; IPR001356; IPR001356; IPR001356; IPR001356; IPR001356; IPR001356; IPR001356	Homeobox domain; Homeobox domain; Homeobox domain; Homeobox domain; Homeobox domain; Homeobox domain; Homeobox domain; Homeobox domain; Homeobox domain
hsd_id_Theobroma_cacao_41	XP_007009084.2; XP_017984880.1; XP_007026775.2	479; 486; 469	Pfam	PF02458; PF02458; PF02458	Transferase family; Transferase family; Transferase family	IPR003480; IPR003480; IPR003480	Transferase; Transferase; Transferase
hsd_id_Theobroma_cacao_42	XP_007009088.1; XP_007011448.2	341; 357	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_43	XP_007009093.2; XP_007016182.1; XP_017977401.1; XP_007015770.2; XP_017973413.1; XP_007024302.1; XP_007038262.2; XP_007044445.2; XP_007037108.2; XP_007019862.1; XP_007043217.1; XP_017982011.1; XP_007012263.2; XP_017982962.1; XP_007036438.2	283; 307; 309; 212; 328; 356; 324; 300; 300; 187; 296; 256; 276; 245; 296	Pfam	PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930	Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain
hsd_id_Theobroma_cacao_44	XP_007009112.2; XP_007016212.2; XP_007026813.1; XP_017976994.1; XP_017973965.1	306; 303; 306; 331; 356	Pfam	PF03151; PF03151; PF03151; PF03151; PF03151	Triose-phosphate Transporter family; Triose-phosphate Transporter family; Triose-phosphate Transporter family; Triose-phosphate Transporter family; Triose-phosphate Transporter family	IPR004853; IPR004853; IPR004853; IPR004853; IPR004853	Sugar phosphate transporter domain; Sugar phosphate transporter domain; Sugar phosphate transporter domain; Sugar phosphate transporter domain; Sugar phosphate transporter domain
hsd_id_Theobroma_cacao_45	XP_007009113.2; XP_007026817.1	112; 112	Pfam	PF01247; PF01247	Ribosomal protein L35Ae; Ribosomal protein L35Ae	IPR001780; IPR001780	Ribosomal protein L35A; Ribosomal protein L35A
hsd_id_Theobroma_cacao_46	XP_007009119.2; XP_017976890.1; XP_007012656.2; XP_007048355.2; XP_017981178.1	565; 644; 626; 511; 551	Pfam	PF10250; PF10250; PF10250; PF10250; PF10250	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase	IPR019378; IPR019378; IPR019378; IPR019378; IPR019378	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase
hsd_id_Theobroma_cacao_47	XP_007009128.2; XP_007026837.2	206; 229	Pfam	PF12906; PF12906	RING-variant domain; RING-variant domain	IPR011016; IPR011016	Zinc finger, RING-CH-type; Zinc finger, RING-CH-type
hsd_id_Theobroma_cacao_48	XP_007009129.2; XP_007046982.1; XP_017981149.1; XP_007018556.2; XP_007042578.1; XP_007022782.2; XP_007029105.2	429; 368; 379; 453; 478; 386; 359	Pfam	PF04788; PF04788; PF04788; PF04788; PF04788; PF04788; PF04788	Protein of unknown function (DUF620); Protein of unknown function (DUF620); Protein of unknown function (DUF620); Protein of unknown function (DUF620); Protein of unknown function (DUF620); Protein of unknown function (DUF620); Protein of unknown function (DUF620)	IPR006873; IPR006873; IPR006873; IPR006873; IPR006873; IPR006873; IPR006873	Protein of unknown function DUF620; Protein of unknown function DUF620; Protein of unknown function DUF620; Protein of unknown function DUF620; Protein of unknown function DUF620; Protein of unknown function DUF620; Protein of unknown function DUF620
hsd_id_Theobroma_cacao_49	XP_007009131.2; XP_007009133.1; XP_007009132.2; XP_007026849.2; XP_007026845.2; XP_017976256.1; XP_017977597.1; XP_007026851.2	479; 481; 482; 479; 488; 488; 496; 489	Pfam	PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_50	XP_007009139.2; XP_017984652.1; XP_017984162.1; XP_007016264.2; XP_017983508.1; XP_017983470.1; XP_007016255.2	461; 461; 464; 450; 451; 445; 474	Pfam	PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_51	XP_007009154.1; XP_017977476.1; XP_007026867.2; XP_007010260.1; XP_017985163.1; XP_007045399.2	114; 121; 118; 118; 118; 122	Pfam	PF14368; PF14368; PF14368; PF14368; PF14368; PF14368	Probable lipid transfer; Probable lipid transfer; Probable lipid transfer; Probable lipid transfer; Probable lipid transfer; Probable lipid transfer	IPR016140; IPR016140; IPR016140; IPR016140; IPR016140; IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
hsd_id_Theobroma_cacao_52	XP_007009172.2; XP_007026878.2	596; 589	Pfam	PF00854; PF00854	POT family; POT family	IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_53	XP_007009178.2; XP_007047057.2; XP_017981387.1	520; 547; 478	Pfam	PF12315, PF00412; PF12315, PF00412; PF12315, PF00412	Protein DA1, LIM domain; Protein DA1, LIM domain; Protein DA1, LIM domain	IPR022087, IPR001781; IPR022087, IPR001781; IPR022087, IPR001781	Protein DA1-like, Zinc finger, LIM-type; Protein DA1-like, Zinc finger, LIM-type; Protein DA1-like, Zinc finger, LIM-type
hsd_id_Theobroma_cacao_54	XP_007009182.1; XP_007030433.2; XP_007016295.1; XP_017973279.1; XP_017975832.1; XP_017975326.1; XP_007031027.1	320; 342; 308; 321; 330; 301; 325	Pfam	PF16891, PF00149; PF16891, PF00149; PF16891, PF00149; PF16891, PF00149; PF16891, PF00149; PF16891, PF00149; PF00149, PF16891	Serine-threonine protein phosphatase N-terminal domain, Calcineurin-like phosphoesterase; Serine-threonine protein phosphatase N-terminal domain, Calcineurin-like phosphoesterase; Serine-threonine protein phosphatase N-terminal domain, Calcineurin-like phosphoesterase; Serine-threonine protein phosphatase N-terminal domain, Calcineurin-like phosphoesterase; Serine-threonine protein phosphatase N-terminal domain, Calcineurin-like phosphoesterase; Serine-threonine protein phosphatase N-terminal domain, Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase, Serine-threonine protein phosphatase N-terminal domain	IPR031675, IPR004843; IPR031675, IPR004843; IPR031675, IPR004843; IPR031675, IPR004843; IPR031675, IPR004843; IPR031675, IPR004843; IPR004843, IPR031675	Serine-threonine protein phosphatase, N-terminal, Calcineurin-like phosphoesterase domain, ApaH type; Serine-threonine protein phosphatase, N-terminal, Calcineurin-like phosphoesterase domain, ApaH type; Serine-threonine protein phosphatase, N-terminal, Calcineurin-like phosphoesterase domain, ApaH type; Serine-threonine protein phosphatase, N-terminal, Calcineurin-like phosphoesterase domain, ApaH type; Serine-threonine protein phosphatase, N-terminal, Calcineurin-like phosphoesterase domain, ApaH type; Serine-threonine protein phosphatase, N-terminal, Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type, Serine-threonine protein phosphatase, N-terminal
hsd_id_Theobroma_cacao_55	XP_007009209.1; XP_007026921.1; XP_017974280.1	152; 154; 165	Pfam	PF04535; PF04535; PF04535	Domain of unknown function (DUF588); Domain of unknown function (DUF588); Domain of unknown function (DUF588)	IPR006702; IPR006702; IPR006702	Casparian strip membrane protein domain; Casparian strip membrane protein domain; Casparian strip membrane protein domain
hsd_id_Theobroma_cacao_56	XP_007009211.1; XP_007026923.2	361; 361	Pfam	PF00132, PF00483; PF00483, PF00132	Bacterial transferase hexapeptide (six repeats), Nucleotidyl transferase; Nucleotidyl transferase, Bacterial transferase hexapeptide (six repeats)	IPR001451, IPR005835; IPR005835, IPR001451	Hexapeptide repeat, Nucleotidyl transferase domain; Nucleotidyl transferase domain, Hexapeptide repeat
hsd_id_Theobroma_cacao_57	XP_007009217.1; XP_017982507.1; XP_017976366.1	297; 288; 292	Pfam	PF12353, PF00076; PF00076, PF12353; PF00076, PF12353	Eukaryotic translation initiation factor 3 subunit G, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Eukaryotic translation initiation factor 3 subunit G; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Eukaryotic translation initiation factor 3 subunit G	IPR024675, IPR000504; IPR000504, IPR024675; IPR000504, IPR024675	Eukaryotic translation initiation factor 3 subunit G, N-terminal, RNA recognition motif domain; RNA recognition motif domain, Eukaryotic translation initiation factor 3 subunit G, N-terminal; RNA recognition motif domain, Eukaryotic translation initiation factor 3 subunit G, N-terminal
hsd_id_Theobroma_cacao_58	XP_007009233.2; XP_017976816.1; XP_017983516.1; XP_017983552.1; XP_017983408.1; XP_017982223.1	737; 755; 766; 787; 705; 690	Pfam	PF03514; PF03514; PF03514; PF03514; PF03514; PF03514	GRAS domain family; GRAS domain family; GRAS domain family; GRAS domain family; GRAS domain family; GRAS domain family	IPR005202; IPR005202; IPR005202; IPR005202; IPR005202; IPR005202	Transcription factor GRAS; Transcription factor GRAS; Transcription factor GRAS; Transcription factor GRAS; Transcription factor GRAS; Transcription factor GRAS
hsd_id_Theobroma_cacao_59	XP_007009245.1; XP_017982718.1; XP_007020830.2	272; 277; 270	Pfam	PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_60	XP_007009248.2; XP_007026969.2; XP_017982429.1	391; 369; 393	Pfam	PF06547, PF14369, PF13639; PF13639, PF14369, PF06547; PF13639, PF14369, PF06547	Protein of unknown function (DUF1117), zinc-ribbon, Ring finger domain; Ring finger domain, zinc-ribbon, Protein of unknown function (DUF1117); Ring finger domain, zinc-ribbon, Protein of unknown function (DUF1117)	IPR010543, IPR039525, IPR001841; IPR001841, IPR039525, IPR010543; IPR001841, IPR039525, IPR010543	Domain of unknown function DUF1117, E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon, Zinc finger, RING-type; Zinc finger, RING-type, E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon, Domain of unknown function DUF1117; Zinc finger, RING-type, E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon, Domain of unknown function DUF1117
hsd_id_Theobroma_cacao_61	XP_007009264.1; XP_007026966.2; XP_007018987.1; XP_007034302.2; XP_007027490.2; XP_007041520.2; XP_007017454.1; XP_017978313.1; XP_017978320.1; XP_017973999.1; XP_007041885.2; XP_007017827.2; XP_017981214.1; XP_007041886.2; XP_017976161.1; XP_007027494.2	248; 317; 283; 293; 241; 287; 247; 317; 316; 275; 376; 313; 320; 314; 242; 243	Pfam	PF00314; PF00314; PF00314; PF00314; PF00314; PF00314; PF00314; PF00314; PF00314; PF00314; PF00314; PF00314; PF00314; PF00314; PF00314; PF00314	Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family	IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938	Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family
hsd_id_Theobroma_cacao_62	XP_007009268.1; XP_017976224.1; XP_017976262.1; XP_017978838.1	476; 493; 576; 428	Pfam	PF00004; PF00004; PF00004; PF00004	ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA)	IPR003959; IPR003959; IPR003959; IPR003959	ATPase, AAA-type, core; ATPase, AAA-type, core; ATPase, AAA-type, core; ATPase, AAA-type, core
hsd_id_Theobroma_cacao_63	XP_007009274.2; XP_017976344.1	492; 509	Pfam	PF04646; PF04646	Protein of unknown function, DUF604; Protein of unknown function, DUF604	IPR006740; IPR006740	Protein of unknown function DUF604; Protein of unknown function DUF604
hsd_id_Theobroma_cacao_64	XP_007009277.2; XP_007016329.2; XP_017983990.1; XP_017982510.1; XP_017982506.1; XP_007016321.2; XP_017983699.1; XP_017976975.1; XP_017982428.1	273; 320; 272; 279; 271; 271; 283; 279; 249	Pfam	PF13561; PF13561; PF13561; PF13561; PF13561; PF13561; PF13561; PF13561; PF13561	Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase	-; -; -; -; -; -; -; -; -	-; -; -; -; -; -; -; -; -
hsd_id_Theobroma_cacao_65	XP_007009278.2; XP_007016312.2	412; 456	Pfam	PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_66	XP_007009281.2; XP_017981647.1; XP_017974948.1; XP_007050260.2; XP_017975679.1	682; 675; 615; 613; 614	Pfam	PF03141; PF03141; PF03141; PF03141; PF03141	Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159; IPR004159; IPR004159; IPR004159; IPR004159	Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase
hsd_id_Theobroma_cacao_67	XP_007009309.2; XP_007014684.2; XP_007029107.2; XP_007035427.2	279; 269; 210; 291	Pfam	PF00076; PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_68	XP_007009341.2; XP_007013798.2; XP_007016411.2; XP_007039107.2	440; 483; 497; 482	Pfam	PF07983, PF00332; PF07983, PF00332; PF00332, PF07983; PF07983, PF00332	X8 domain, Glycosyl hydrolases family 17; X8 domain, Glycosyl hydrolases family 17; Glycosyl hydrolases family 17, X8 domain; X8 domain, Glycosyl hydrolases family 17	IPR012946, IPR000490; IPR012946, IPR000490; IPR000490, IPR012946; IPR012946, IPR000490	X8 domain, Glycoside hydrolase family 17; X8 domain, Glycoside hydrolase family 17; Glycoside hydrolase family 17, X8 domain; X8 domain, Glycoside hydrolase family 17
hsd_id_Theobroma_cacao_69	XP_007009346.1; XP_017977121.1; XP_017983628.1; XP_007027035.1; XP_017984096.1; XP_017970876.1; XP_007039275.1; XP_017983366.1	377; 377; 377; 377; 377; 376; 377; 376	Pfam	PF00022; PF00022; PF00022; PF00022; PF00022; PF00022; PF00022; PF00022	Actin; Actin; Actin; Actin; Actin; Actin; Actin; Actin	IPR004000; IPR004000; IPR004000; IPR004000; IPR004000; IPR004000; IPR004000; IPR004000	Actin family; Actin family; Actin family; Actin family; Actin family; Actin family; Actin family; Actin family
hsd_id_Theobroma_cacao_70	XP_007009354.2; XP_017982332.1	250; 239	Pfam	PF03107; PF03107	C1 domain; C1 domain	IPR004146; IPR004146	DC1; DC1
hsd_id_Theobroma_cacao_71	XP_007009361.2; XP_017976252.1; XP_007016450.2; XP_007047735.1; XP_017973448.1; XP_007025580.2; XP_017972331.1; XP_017974053.1; XP_017973814.1; XP_007051498.2; XP_007047150.2; XP_007019428.2; XP_017976785.1; XP_017978744.1; XP_007024439.2; XP_017978738.1; XP_007015499.2; XP_007047127.1; XP_007017388.2; XP_017970507.1; XP_007029942.2; XP_017973546.1; XP_007025382.1	348; 348; 320; 323; 280; 360; 306; 278; 405; 284; 328; 305; 268; 324; 253; 340; 297; 237; 244; 498; 487; 493; 169	Pfam	PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701; PF02701	Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger; Dof domain, zinc finger	IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851; IPR003851	Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type; Zinc finger, Dof-type
hsd_id_Theobroma_cacao_72	XP_007009362.2; XP_017984687.1; XP_007027052.2; XP_017983390.1; XP_017982499.1; XP_017983295.1; XP_007040596.2; XP_017977288.1; XP_007042500.2; XP_007047700.1; XP_007033712.2; XP_017974233.1	652; 649; 646; 650; 648; 650; 665; 692; 677; 680; 703; 708	Pfam	PF00012; PF00012; PF00012; PF00012; PF00012; PF00012; PF00012; PF00012; PF00012; PF00012; PF00012; PF00012	Hsp70 protein; Hsp70 protein; Hsp70 protein; Hsp70 protein; Hsp70 protein; Hsp70 protein; Hsp70 protein; Hsp70 protein; Hsp70 protein; Hsp70 protein; Hsp70 protein; Hsp70 protein	IPR013126; IPR013126; IPR013126; IPR013126; IPR013126; IPR013126; IPR013126; IPR013126; IPR013126; IPR013126; IPR013126; IPR013126	Heat shock protein 70 family; Heat shock protein 70 family; Heat shock protein 70 family; Heat shock protein 70 family; Heat shock protein 70 family; Heat shock protein 70 family; Heat shock protein 70 family; Heat shock protein 70 family; Heat shock protein 70 family; Heat shock protein 70 family; Heat shock protein 70 family; Heat shock protein 70 family
hsd_id_Theobroma_cacao_73	XP_007009368.2; XP_007016458.2; XP_017977443.1	507; 502; 501	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_74	XP_007009371.2; XP_007016471.1	166; 166	Pfam	PF00179; PF00179	Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme	IPR000608; IPR000608	Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2
hsd_id_Theobroma_cacao_75	XP_007009374.2; XP_007009452.1; XP_017976532.1; XP_007029798.2; XP_017976708.1; XP_007031273.2; XP_017976533.1; XP_017975171.1; XP_017981834.1	233; 233; 233; 233; 239; 207; 185; 155; 160	Pfam	PF00319; PF00319; PF00319; PF00319; PF00319; PF00319; PF00319; PF00319; PF00319	SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain)	IPR002100; IPR002100; IPR002100; IPR002100; IPR002100; IPR002100; IPR002100; IPR002100; IPR002100	Transcription factor, MADS-box; Transcription factor, MADS-box; Transcription factor, MADS-box; Transcription factor, MADS-box; Transcription factor, MADS-box; Transcription factor, MADS-box; Transcription factor, MADS-box; Transcription factor, MADS-box; Transcription factor, MADS-box
hsd_id_Theobroma_cacao_76	XP_007016577.1; XP_007016483.1; XP_007014216.1; XP_017985006.1; XP_007009385.1; XP_007024825.1; XP_007027069.1; XP_007027067.1	103; 103; 103; 103; 103; 103; 103; 103	Pfam	PF15511; PF15511; PF15511; PF15511; PF15511; PF15511; PF15511; PF15511	Centromere kinetochore component CENP-T histone fold; Centromere kinetochore component CENP-T histone fold; Centromere kinetochore component CENP-T histone fold; Centromere kinetochore component CENP-T histone fold; Centromere kinetochore component CENP-T histone fold; Centromere kinetochore component CENP-T histone fold; Centromere kinetochore component CENP-T histone fold; Centromere kinetochore component CENP-T histone fold	IPR035425; IPR035425; IPR035425; IPR035425; IPR035425; IPR035425; IPR035425; IPR035425	CENP-T/Histone H4, histone fold; CENP-T/Histone H4, histone fold; CENP-T/Histone H4, histone fold; CENP-T/Histone H4, histone fold; CENP-T/Histone H4, histone fold; CENP-T/Histone H4, histone fold; CENP-T/Histone H4, histone fold; CENP-T/Histone H4, histone fold
hsd_id_Theobroma_cacao_77	XP_007009386.2; XP_007016485.1; XP_007010015.1; XP_017977687.1	429; 420; 413; 422	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_78	XP_007009406.2; XP_007035052.2; XP_007035051.2	244; 239; 243	Pfam	PF00378; PF00378; PF00378	Enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase	IPR001753; IPR001753; IPR001753	Enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase
hsd_id_Theobroma_cacao_79	XP_007009428.2; XP_017984254.1; XP_017984505.1; XP_017984492.1; XP_007027104.2; XP_007019030.1; XP_017984134.1; XP_017984136.1; XP_007019027.2; XP_007019026.2	376; 394; 394; 369; 391; 383; 407; 407; 386; 392	Pfam	PF00892; PF00892; PF00892; PF00892; PF00892; PF00892; PF00892; PF00892; PF00892; PF00892	EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family	IPR000620; IPR000620; IPR000620; IPR000620; IPR000620; IPR000620; IPR000620; IPR000620; IPR000620; IPR000620	EamA domain; EamA domain; EamA domain; EamA domain; EamA domain; EamA domain; EamA domain; EamA domain; EamA domain; EamA domain
hsd_id_Theobroma_cacao_80	XP_007009443.2; XP_007016519.1; XP_017982539.1	400; 392; 408	Pfam	PF13359; PF13359; PF13359	DDE superfamily endonuclease; DDE superfamily endonuclease; DDE superfamily endonuclease	IPR027806; IPR027806; IPR027806	Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain
hsd_id_Theobroma_cacao_81	XP_007009482.1; XP_007016527.2; XP_007027468.1; XP_007099759.1; XP_007024239.1; XP_007039804.2; XP_007012110.1; XP_007038373.1	252; 252; 251; 255; 248; 250; 247; 260	Pfam	PF00230; PF00230; PF00230; PF00230; PF00230; PF00230; PF00230; PF00230	Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein	IPR000425; IPR000425; IPR000425; IPR000425; IPR000425; IPR000425; IPR000425; IPR000425	Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein
hsd_id_Theobroma_cacao_82	XP_007009502.2; XP_017984203.1; XP_007009504.2; XP_017984745.1	488; 488; 488; 495	Pfam	PF12796, PF13962; PF12796, PF13962; PF13962, PF12796; PF13962, PF12796	Ankyrin repeats (3 copies), Domain of unknown function; Ankyrin repeats (3 copies), Domain of unknown function; Domain of unknown function, Ankyrin repeats (3 copies); Domain of unknown function, Ankyrin repeats (3 copies)	IPR020683, IPR026961; IPR020683, IPR026961; IPR026961, IPR020683; IPR026961, IPR020683	Ankyrin repeat-containing domain, PGG domain; Ankyrin repeat-containing domain, PGG domain; PGG domain, Ankyrin repeat-containing domain; PGG domain, Ankyrin repeat-containing domain
hsd_id_Theobroma_cacao_83	XP_007009531.2; XP_017984859.1	456; 456	Pfam	PF12796, PF13962; PF12796, PF13962	Ankyrin repeats (3 copies), Domain of unknown function; Ankyrin repeats (3 copies), Domain of unknown function	IPR020683, IPR026961; IPR020683, IPR026961	Ankyrin repeat-containing domain, PGG domain; Ankyrin repeat-containing domain, PGG domain
hsd_id_Theobroma_cacao_84	XP_007009533.1; XP_007016535.1	154; 151	Pfam	PF03939, PF00276; PF00276, PF03939	Ribosomal protein L23, N-terminal domain, Ribosomal protein L23; Ribosomal protein L23, Ribosomal protein L23, N-terminal domain	IPR005633, IPR013025; IPR013025, IPR005633	Ribosomal protein L23/L25, N-terminal, Ribosomal protein L25/L23; Ribosomal protein L25/L23, Ribosomal protein L23/L25, N-terminal
hsd_id_Theobroma_cacao_85	XP_007009535.2; XP_017984103.1; XP_007009579.2; XP_007016547.1	491; 460; 455; 465	Pfam	PF08541, PF08392; PF08541, PF08392; PF08392, PF08541; PF08392, PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal, FAE1/Type III polyketide synthase-like protein; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal	IPR013747, IPR013601; IPR013747, IPR013601; IPR013601, IPR013747; IPR013601, IPR013747	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal, FAE1/Type III polyketide synthase-like protein; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal
hsd_id_Theobroma_cacao_86	XP_007009539.2; XP_017984496.1	254; 251	Pfam	PF05056; PF05056	Protein of unknown function (DUF674); Protein of unknown function (DUF674)	IPR007750; IPR007750	Protein of unknown function DUF674; Protein of unknown function DUF674
hsd_id_Theobroma_cacao_87	XP_007009545.1; XP_017980580.1; XP_017980583.1; XP_007022709.2; XP_017983744.1; XP_007029042.1	395; 405; 401; 401; 407; 408	Pfam	PF01545, PF16916; PF16916, PF01545; PF16916, PF01545; PF01545, PF16916; PF16916, PF01545; PF16916, PF01545	Cation efflux family, Dimerisation domain of Zinc Transporter; Dimerisation domain of Zinc Transporter, Cation efflux family; Dimerisation domain of Zinc Transporter, Cation efflux family; Cation efflux family, Dimerisation domain of Zinc Transporter; Dimerisation domain of Zinc Transporter, Cation efflux family; Dimerisation domain of Zinc Transporter, Cation efflux family	IPR002524, IPR027470; IPR027470, IPR002524; IPR027470, IPR002524; IPR002524, IPR027470; IPR027470, IPR002524; IPR027470, IPR002524	Cation efflux protein, Cation efflux protein, cytoplasmic domain; Cation efflux protein, cytoplasmic domain, Cation efflux protein; Cation efflux protein, cytoplasmic domain, Cation efflux protein; Cation efflux protein, Cation efflux protein, cytoplasmic domain; Cation efflux protein, cytoplasmic domain, Cation efflux protein; Cation efflux protein, cytoplasmic domain, Cation efflux protein
hsd_id_Theobroma_cacao_88	XP_007009551.1; XP_007009555.1; XP_017977205.1; XP_007031530.1; XP_017970076.1	94; 94; 101; 98; 101	Pfam	PF09713; PF09713; PF09713; PF09713; PF09713	Plant protein 1589 of unknown function (A_thal_3526); Plant protein 1589 of unknown function (A_thal_3526); Plant protein 1589 of unknown function (A_thal_3526); Plant protein 1589 of unknown function (A_thal_3526); Plant protein 1589 of unknown function (A_thal_3526)	IPR006476; IPR006476; IPR006476; IPR006476; IPR006476	Conserved hypothetical protein CHP01589, plant; Conserved hypothetical protein CHP01589, plant; Conserved hypothetical protein CHP01589, plant; Conserved hypothetical protein CHP01589, plant; Conserved hypothetical protein CHP01589, plant
hsd_id_Theobroma_cacao_89	XP_007009562.2; XP_007016542.2; XP_007009563.2; XP_017983565.1	300; 301; 384; 309	Pfam	PF03018; PF03018; PF03018; PF03018	Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein	IPR004265; IPR004265; IPR004265; IPR004265	Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein
hsd_id_Theobroma_cacao_90	XP_007009570.1; XP_007009573.2; XP_017972372.1	323; 324; 343	Pfam	PF12146; PF12146; PF12146	Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33	IPR022742; IPR022742; IPR022742	Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33
hsd_id_Theobroma_cacao_91	XP_007009574.1; XP_007016545.2; XP_007027132.2	123; 159; 123	Pfam	PF00831; PF00831; PF00831	Ribosomal L29 protein; Ribosomal L29 protein; Ribosomal L29 protein	IPR001854; IPR001854; IPR001854	Ribosomal protein L29/L35; Ribosomal protein L29/L35; Ribosomal protein L29/L35
hsd_id_Theobroma_cacao_92	XP_007009575.2; XP_007027133.2; XP_017983801.1	639; 633; 623	Pfam	PF03081; PF03081; PF03081	Exo70 exocyst complex subunit; Exo70 exocyst complex subunit; Exo70 exocyst complex subunit	IPR004140; IPR004140; IPR004140	Exocyst complex component Exo70; Exocyst complex component Exo70; Exocyst complex component Exo70
hsd_id_Theobroma_cacao_93	XP_007009576.2; XP_017977778.1	325; 375	Pfam	PF00544; PF00544	Pectate lyase; Pectate lyase	IPR002022; IPR002022	Pectate lyase; Pectate lyase
hsd_id_Theobroma_cacao_94	XP_007009583.2; XP_007027138.2	363; 365	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_95	XP_007009590.1; XP_007009593.1; XP_017970716.1; XP_007044624.2; XP_007044631.2	163; 161; 165; 149; 164	Pfam	PF00010; PF00010; PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_96	XP_007009620.1; XP_017976200.1	304; 303	Pfam	PF00076, PF00098; PF00076, PF00098	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Zinc knuckle; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Zinc knuckle	IPR000504, IPR001878; IPR000504, IPR001878	RNA recognition motif domain, Zinc finger, CCHC-type; RNA recognition motif domain, Zinc finger, CCHC-type
hsd_id_Theobroma_cacao_97	XP_007009638.1; XP_007041776.2; XP_007046602.1; XP_017970815.1; XP_007027175.2; XP_017977120.1; XP_007047455.1; XP_007042590.1; XP_017980112.1	384; 397; 397; 392; 371; 388; 380; 381; 387	Pfam	PF00481; PF00481; PF00481; PF00481; PF00481; PF00481; PF00481; PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932; IPR001932; IPR001932; IPR001932; IPR001932; IPR001932; IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_98	XP_007009685.2; XP_007016635.2	377; 375	Pfam	PF13242, PF13344; PF13242, PF13344	HAD-hyrolase-like, Haloacid dehalogenase-like hydrolase; HAD-hyrolase-like, Haloacid dehalogenase-like hydrolase	-, IPR006357; -, IPR006357	-, HAD-superfamily hydrolase, subfamily IIA; -, HAD-superfamily hydrolase, subfamily IIA
hsd_id_Theobroma_cacao_99	XP_007009700.2; XP_007045963.2	411; 382	Pfam	PF02582; PF02582	Uncharacterised ACR, YagE family COG1723; Uncharacterised ACR, YagE family COG1723	IPR003734; IPR003734	Domain of unknown function DUF155; Domain of unknown function DUF155
hsd_id_Theobroma_cacao_100	XP_007009715.1; XP_017980817.1; XP_017972149.1; XP_007019702.2	256; 265; 254; 268	Pfam	PF00076; PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_101	XP_007009733.1; XP_007027252.1	142; 142	Pfam	PF00164; PF00164	Ribosomal protein S12/S23; Ribosomal protein S12/S23	IPR006032; IPR006032	Ribosomal protein S12/S23; Ribosomal protein S12/S23
hsd_id_Theobroma_cacao_102	XP_007009735.2; XP_007009736.1	192; 193	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_103	XP_007009744.1; XP_007027262.2	112; 124	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_104	XP_007009748.2; XP_007027263.2	485; 478	Pfam	PF00612; PF00612	IQ calmodulin-binding motif; IQ calmodulin-binding motif	IPR000048; IPR000048	IQ motif, EF-hand binding site; IQ motif, EF-hand binding site
hsd_id_Theobroma_cacao_105	XP_007009751.1; XP_017982927.1; XP_007009760.1; XP_007015466.1; XP_017977148.1	449; 449; 449; 449; 449	Pfam	PF03143, PF00009, PF03144; PF00009, PF03143, PF03144; PF03144, PF03143, PF00009; PF00009, PF03144, PF03143; PF00009, PF03144, PF03143	Elongation factor Tu C-terminal domain, Elongation factor Tu GTP binding domain, Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain, Elongation factor Tu C-terminal domain, Elongation factor Tu domain 2; Elongation factor Tu domain 2, Elongation factor Tu C-terminal domain, Elongation factor Tu GTP binding domain; Elongation factor Tu GTP binding domain, Elongation factor Tu domain 2, Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain, Elongation factor Tu domain 2, Elongation factor Tu C-terminal domain	IPR004160, IPR000795, IPR004161; IPR000795, IPR004160, IPR004161; IPR004161, IPR004160, IPR000795; IPR000795, IPR004161, IPR004160; IPR000795, IPR004161, IPR004160	Translation elongation factor EFTu/EF1A, C-terminal, Translational (tr)-type GTP-binding domain, Translation elongation factor EFTu-like, domain 2; Translational (tr)-type GTP-binding domain, Translation elongation factor EFTu/EF1A, C-terminal, Translation elongation factor EFTu-like, domain 2; Translation elongation factor EFTu-like, domain 2, Translation elongation factor EFTu/EF1A, C-terminal, Translational (tr)-type GTP-binding domain; Translational (tr)-type GTP-binding domain, Translation elongation factor EFTu-like, domain 2, Translation elongation factor EFTu/EF1A, C-terminal; Translational (tr)-type GTP-binding domain, Translation elongation factor EFTu-like, domain 2, Translation elongation factor EFTu/EF1A, C-terminal
hsd_id_Theobroma_cacao_106	XP_007009765.2; XP_007040965.2	374; 374	Pfam	PF17035, PF00439; PF00439, PF17035	Bromodomain extra-terminal - transcription regulation, Bromodomain; Bromodomain, Bromodomain extra-terminal - transcription regulation	IPR027353, IPR001487; IPR001487, IPR027353	NET domain, Bromodomain; Bromodomain, NET domain
hsd_id_Theobroma_cacao_107	XP_007009767.2; XP_007048036.2	215; 223	Pfam	PF00254; PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidyl-prolyl cis-trans isomerase	IPR001179; IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain; FKBP-type peptidyl-prolyl cis-trans isomerase domain
hsd_id_Theobroma_cacao_108	XP_007009783.2; XP_007040820.2	353; 351	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_109	XP_007009792.2; XP_007015436.2; XP_017976850.1; XP_007015440.1; XP_017983398.1; XP_007018107.2; XP_007018110.2; XP_017978890.1; XP_017977434.1; XP_017971805.1	574; 580; 560; 537; 575; 562; 532; 519; 559; 573	Pfam	PF03094; PF03094; PF03094; PF03094; PF03094; PF03094; PF03094; PF03094; PF03094; PF03094	Mlo family; Mlo family; Mlo family; Mlo family; Mlo family; Mlo family; Mlo family; Mlo family; Mlo family; Mlo family	IPR004326; IPR004326; IPR004326; IPR004326; IPR004326; IPR004326; IPR004326; IPR004326; IPR004326; IPR004326	Mlo-related protein; Mlo-related protein; Mlo-related protein; Mlo-related protein; Mlo-related protein; Mlo-related protein; Mlo-related protein; Mlo-related protein; Mlo-related protein; Mlo-related protein
hsd_id_Theobroma_cacao_110	XP_007009814.1; XP_017976668.1; XP_007025673.2	369; 374; 370	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_111	XP_007009823.2; XP_007027326.2; XP_007020055.2	110; 170; 114	Pfam	PF03179; PF03179; PF03179	Vacuolar (H+)-ATPase G subunit; Vacuolar (H+)-ATPase G subunit; Vacuolar (H+)-ATPase G subunit	IPR005124; IPR005124; IPR005124	Vacuolar (H+)-ATPase G subunit; Vacuolar (H+)-ATPase G subunit; Vacuolar (H+)-ATPase G subunit
hsd_id_Theobroma_cacao_112	XP_007009824.2; XP_007050830.2; XP_017975508.1	739; 739; 744	Pfam	PF10557, PF00888; PF00888, PF10557; PF10557, PF00888	Cullin protein neddylation domain, Cullin family; Cullin family, Cullin protein neddylation domain; Cullin protein neddylation domain, Cullin family	IPR019559, IPR001373; IPR001373, IPR019559; IPR019559, IPR001373	Cullin protein, neddylation domain, Cullin, N-terminal; Cullin, N-terminal, Cullin protein, neddylation domain; Cullin protein, neddylation domain, Cullin, N-terminal
hsd_id_Theobroma_cacao_113	XP_007009851.1; XP_007016757.1	73; 73	Pfam	PF00240; PF00240	Ubiquitin family; Ubiquitin family	IPR000626; IPR000626	Ubiquitin-like domain; Ubiquitin-like domain
hsd_id_Theobroma_cacao_114	XP_007009861.2; XP_007027338.2; XP_017983502.1	643; 631; 631	Pfam	PF03000, PF00651; PF03000, PF00651; PF03000, PF00651	NPH3 family, BTB/POZ domain; NPH3 family, BTB/POZ domain; NPH3 family, BTB/POZ domain	IPR027356, IPR000210; IPR027356, IPR000210; IPR027356, IPR000210	NPH3 domain, BTB/POZ domain; NPH3 domain, BTB/POZ domain; NPH3 domain, BTB/POZ domain
hsd_id_Theobroma_cacao_115	XP_007009874.2; XP_007027361.1	341; 341	Pfam	PF00294; PF00294	pfkB family carbohydrate kinase; pfkB family carbohydrate kinase	IPR011611; IPR011611	Carbohydrate kinase PfkB; Carbohydrate kinase PfkB
hsd_id_Theobroma_cacao_116	XP_007009884.1; XP_007009890.1; XP_007009885.1; XP_017977294.1; XP_007029839.2	71; 71; 71; 160; 160	Pfam	PF00280; PF00280; PF00280; PF00280; PF00280	Potato inhibitor I family; Potato inhibitor I family; Potato inhibitor I family; Potato inhibitor I family; Potato inhibitor I family	IPR000864; IPR000864; IPR000864; IPR000864; IPR000864	Proteinase inhibitor I13, potato inhibitor I; Proteinase inhibitor I13, potato inhibitor I; Proteinase inhibitor I13, potato inhibitor I; Proteinase inhibitor I13, potato inhibitor I; Proteinase inhibitor I13, potato inhibitor I
hsd_id_Theobroma_cacao_117	XP_007009895.1; XP_017981953.1	419; 441	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_118	XP_007009907.2; XP_017985076.1	413; 413	Pfam	PF11955; PF11955	Plant organelle RNA recognition domain; Plant organelle RNA recognition domain	IPR021099; IPR021099	Plant organelle RNA recognition domain; Plant organelle RNA recognition domain
hsd_id_Theobroma_cacao_119	XP_007009915.2; XP_007029025.1	203; 187	Pfam	PF00085; PF00085	Thioredoxin; Thioredoxin	IPR013766; IPR013766	Thioredoxin domain; Thioredoxin domain
hsd_id_Theobroma_cacao_120	XP_007009939.1; XP_007024868.2; XP_017978868.1; XP_017983957.1	201; 200; 200; 199	Pfam	PF00071; PF00071; PF00071; PF00071	Ras family; Ras family; Ras family; Ras family	IPR001806; IPR001806; IPR001806; IPR001806	Small GTPase; Small GTPase; Small GTPase; Small GTPase
hsd_id_Theobroma_cacao_121	XP_007009946.2; XP_007046990.1	596; 585	Pfam	PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_122	XP_007009958.2; XP_017983440.1	637; 666	Pfam	PF00514, PF04564; PF00514, PF04564	Armadillo/beta-catenin-like repeat, U-box domain; Armadillo/beta-catenin-like repeat, U-box domain	IPR000225, IPR003613; IPR000225, IPR003613	Armadillo, U box domain; Armadillo, U box domain
hsd_id_Theobroma_cacao_123	XP_007009970.2; XP_017984147.1; XP_017975879.1; XP_007013070.2; XP_007040121.2; XP_017972842.1; XP_007025558.2; XP_007012129.1; XP_007024262.1; XP_017972039.1; XP_007052303.2; XP_007039780.2; XP_017972753.1; XP_007012474.2; XP_017973052.1; XP_017970895.1; XP_017981251.1; XP_007040122.2; XP_007017097.1; XP_007039732.2; XP_007052302.2; XP_017969966.1; XP_017975963.1; XP_017976739.1; XP_007020716.1; XP_007038277.2; XP_017976331.1; XP_007027640.2; XP_007014667.2; XP_007025491.2; XP_007032062.2; XP_007030077.2; XP_007043742.1; XP_007038272.2; XP_017975140.1; XP_017973866.1; XP_007015927.2; XP_017972685.1; XP_017984340.1; XP_007035093.2; XP_007019013.1; XP_007051933.2; XP_017973036.1; XP_007028832.2; XP_017985487.1; XP_017980350.1; XP_007030307.2; XP_017980907.1; XP_017982162.1; XP_017976767.1; XP_007011870.2; XP_007023173.1; XP_007051526.2; XP_007019867.2; XP_007012584.2; XP_007011757.1; XP_017976755.1; XP_007025492.2; XP_007023382.2; XP_017980016.1; XP_017978766.1; XP_007047346.1	248; 248; 251; 252; 241; 239; 243; 261; 239; 236; 229; 237; 234; 234; 229; 230; 235; 231; 271; 271; 270; 226; 227; 227; 228; 224; 225; 226; 278; 281; 271; 280; 277; 272; 275; 269; 277; 217; 217; 214; 216; 283; 272; 283; 210; 212; 213; 206; 200; 201; 202; 190; 191; 193; 197; 185; 187; 184; 178; 176; 172; 174	Pfam	PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847	AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain	IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471	AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain
hsd_id_Theobroma_cacao_124	XP_007009998.2; XP_007010000.1	260; 257	Pfam	PF00098, PF00076; PF00076, PF00098	Zinc knuckle, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Zinc knuckle	IPR001878, IPR000504; IPR000504, IPR001878	Zinc finger, CCHC-type, RNA recognition motif domain; RNA recognition motif domain, Zinc finger, CCHC-type
hsd_id_Theobroma_cacao_125	XP_007010003.2; XP_017983171.1	508; 503	Pfam	PF00450; PF00450	Serine carboxypeptidase; Serine carboxypeptidase	IPR001563; IPR001563	Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase
hsd_id_Theobroma_cacao_126	XP_007010008.1; XP_007016862.1	229; 227	Pfam	PF03357; PF03357	Snf7; Snf7	IPR005024; IPR005024	Snf7 family; Snf7 family
hsd_id_Theobroma_cacao_127	XP_007010012.2; XP_007017672.2; XP_007042077.2	382; 401; 373	Pfam	PF08246, PF00112; PF08246, PF00112; PF00112, PF08246	Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease; Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease; Papain family cysteine protease, Cathepsin propeptide inhibitor domain (I29)	IPR013201, IPR000668; IPR013201, IPR000668; IPR000668, IPR013201	Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal; Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal; Peptidase C1A, papain C-terminal, Cathepsin propeptide inhibitor domain (I29)
hsd_id_Theobroma_cacao_128	XP_007010039.2; XP_007010340.2; XP_007019808.2; XP_017980940.1	660; 675; 668; 654	Pfam	PF03107; PF03107; PF03107; PF03107	C1 domain; C1 domain; C1 domain; C1 domain	IPR004146; IPR004146; IPR004146; IPR004146	DC1; DC1; DC1; DC1
hsd_id_Theobroma_cacao_129	XP_007010044.1; XP_007027473.2; XP_017971467.1; XP_007019304.2; XP_007026420.1; XP_007049450.2; XP_017979746.1; XP_007038259.1; XP_017978788.1; XP_007041173.1; XP_007039720.1; XP_007031654.1; XP_007027102.2; XP_017972243.1; XP_007041174.1; XP_017969937.1; XP_007016291.1; XP_007047879.2; XP_017984142.1; XP_007049622.2; XP_007021623.1; XP_007025496.1; XP_007025321.1; XP_007044101.2; XP_007034146.1; XP_017975218.1; XP_017984969.1; XP_007016509.2; XP_007048144.2; XP_017978606.1; XP_007052583.2; XP_017976621.1; XP_007042216.1; XP_017981841.1; XP_007024171.1; XP_017982781.1	216; 212; 211; 211; 211; 211; 120; 203; 203; 201; 203; 211; 216; 217; 215; 236; 216; 225; 217; 217; 217; 217; 218; 218; 214; 217; 216; 217; 207; 245; 225; 222; 206; 215; 207; 206	Pfam	PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071	Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family	IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806	Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase
hsd_id_Theobroma_cacao_130	XP_007010047.2; XP_007048341.2; XP_007048346.2; XP_017972323.1; XP_017973363.1; XP_017981594.1; XP_007025712.1; XP_017972125.1; XP_017981144.1; XP_007030224.1; XP_007021572.2; XP_007032595.2; XP_007027296.2; XP_017977109.1; XP_017978285.1; XP_017980051.1; XP_017983483.1; XP_017972437.1; XP_007046037.1; XP_007021328.2; XP_017984469.1; XP_007038408.2; XP_007019132.2; XP_007022815.2; XP_007023770.1; XP_007022298.1; XP_017982946.1; XP_007050267.1; XP_017981055.1; XP_007046550.2; XP_007038082.1; XP_007036530.2; XP_007048954.1; XP_017970070.1; XP_007021327.1; XP_007030230.1; XP_007048529.2; XP_017978342.1; XP_007043870.2; XP_017974795.1; XP_017971925.1; XP_017982374.1; XP_007048410.2; XP_017974441.1; XP_017976466.1; XP_007051441.2; XP_007039366.2; XP_007024860.2; XP_017980098.1; XP_017980066.1; XP_007028771.2	438; 348; 348; 338; 355; 439; 351; 358; 358; 387; 364; 342; 360; 313; 301; 333; 319; 238; 284; 343; 371; 361; 295; 316; 398; 300; 348; 271; 329; 278; 249; 328; 289; 328; 347; 356; 296; 315; 256; 399; 412; 363; 325; 382; 332; 388; 435; 293; 286; 294; 241	Pfam	PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365; PF02365	No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein	IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441	NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain
hsd_id_Theobroma_cacao_131	XP_007010048.2; XP_007046447.1	245; 245	Pfam	PF01912; PF01912	eIF-6 family; eIF-6 family	IPR002769; IPR002769	Translation initiation factor IF6; Translation initiation factor IF6
hsd_id_Theobroma_cacao_132	XP_007010050.2; XP_017974318.1; XP_017981640.1; XP_007039233.2; XP_007039299.2	590; 655; 651; 576; 655	Pfam	PF02365; PF02365; PF02365; PF02365; PF02365	No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein	IPR003441; IPR003441; IPR003441; IPR003441; IPR003441	NAC domain; NAC domain; NAC domain; NAC domain; NAC domain
hsd_id_Theobroma_cacao_133	XP_007010071.1; XP_017982697.1; XP_007027099.2; XP_007016494.1; XP_007016059.1	143; 148; 139; 151; 142	Pfam	PF00125; PF00125; PF00125; PF00125; PF00125	Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4	IPR007125; IPR007125; IPR007125; IPR007125; IPR007125	Histone H2A/H2B/H3; Histone H2A/H2B/H3; Histone H2A/H2B/H3; Histone H2A/H2B/H3; Histone H2A/H2B/H3
hsd_id_Theobroma_cacao_134	XP_007010132.1; XP_007038620.2; XP_007027572.2	181; 164; 164	Pfam	PF01246; PF01246; PF01246	Ribosomal protein L24e; Ribosomal protein L24e; Ribosomal protein L24e	IPR000988; IPR000988; IPR000988	Ribosomal protein L24e-related; Ribosomal protein L24e-related; Ribosomal protein L24e-related
hsd_id_Theobroma_cacao_135	XP_007010143.2; XP_017971247.1; XP_017971249.1; XP_017985231.1; XP_017979755.1; XP_017979757.1; XP_017979597.1; XP_017979895.1	552; 589; 589; 543; 548; 520; 551; 544	Pfam	PF01397, PF03936; PF01397, PF03936; PF01397, PF03936; PF03936, PF01397; PF01397, PF03936; PF03936, PF01397; PF03936, PF01397; PF03936, PF01397	Terpene synthase, N-terminal domain, Terpene synthase family, metal binding domain; Terpene synthase, N-terminal domain, Terpene synthase family, metal binding domain; Terpene synthase, N-terminal domain, Terpene synthase family, metal binding domain; Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain; Terpene synthase, N-terminal domain, Terpene synthase family, metal binding domain; Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain; Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain; Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain	IPR001906, IPR005630; IPR001906, IPR005630; IPR001906, IPR005630; IPR005630, IPR001906; IPR001906, IPR005630; IPR005630, IPR001906; IPR005630, IPR001906; IPR005630, IPR001906	Terpene synthase, N-terminal domain, Terpene synthase, metal-binding domain; Terpene synthase, N-terminal domain, Terpene synthase, metal-binding domain; Terpene synthase, N-terminal domain, Terpene synthase, metal-binding domain; Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain; Terpene synthase, N-terminal domain, Terpene synthase, metal-binding domain; Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain; Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain; Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain
hsd_id_Theobroma_cacao_136	XP_007010157.1; XP_007027579.2; XP_007028524.2	527; 527; 521	Pfam	PF00224, PF02887; PF00224, PF02887; PF00224, PF02887	Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain; Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain; Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain	IPR015793, IPR015795; IPR015793, IPR015795; IPR015793, IPR015795	Pyruvate kinase, barrel, Pyruvate kinase, C-terminal; Pyruvate kinase, barrel, Pyruvate kinase, C-terminal; Pyruvate kinase, barrel, Pyruvate kinase, C-terminal
hsd_id_Theobroma_cacao_137	XP_007010173.2; XP_017984193.1; XP_017984472.1; XP_017985171.1; XP_017984982.1; XP_017981482.1; XP_017977355.1	408; 408; 408; 423; 412; 488; 419	Pfam	PF03547; PF03547; PF03547; PF03547; PF03547; PF03547; PF03547	Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein	IPR004776; IPR004776; IPR004776; IPR004776; IPR004776; IPR004776; IPR004776	Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein
hsd_id_Theobroma_cacao_138	XP_007010187.2; XP_017984310.1; XP_017983841.1; XP_017973790.1; XP_017973893.1	458; 459; 460; 452; 452	Pfam	PF01490; PF01490; PF01490; PF01490; PF01490	Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein	IPR013057; IPR013057; IPR013057; IPR013057; IPR013057	Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain
hsd_id_Theobroma_cacao_139	XP_007010240.2; XP_017976257.1; XP_007015870.2	502; 538; 516	Pfam	PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_140	XP_007010261.2; XP_017983743.1; XP_017978967.1; XP_007020448.1; XP_007032344.1; XP_017980044.1; XP_007031590.2; XP_007013364.2; XP_007041112.2; XP_017985427.1	537; 460; 614; 604; 536; 576; 678; 474; 446; 726	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_141	XP_007010280.2; XP_017984131.1; XP_017982063.1	130; 130; 130	Pfam	PF00410; PF00410; PF00410	Ribosomal protein S8; Ribosomal protein S8; Ribosomal protein S8	IPR000630; IPR000630; IPR000630	Ribosomal protein S8; Ribosomal protein S8; Ribosomal protein S8
hsd_id_Theobroma_cacao_142	XP_007010286.1; XP_007027643.1; XP_007015921.2	160; 171; 172	Pfam	PF04949; PF04949; PF04949	Transcriptional activator; Transcriptional activator; Transcriptional activator	IPR007033; IPR007033; IPR007033	RAB6-interacting golgin; RAB6-interacting golgin; RAB6-interacting golgin
hsd_id_Theobroma_cacao_143	XP_007010321.2; XP_007030556.2; XP_017977068.1	272; 290; 272	Pfam	PF00967; PF00967; PF00967	Barwin family; Barwin family; Barwin family	IPR001153; IPR001153; IPR001153	Barwin domain; Barwin domain; Barwin domain
hsd_id_Theobroma_cacao_144	XP_007010326.2; XP_017984447.1; XP_007027719.2; XP_007027720.2; XP_007015847.2; XP_007015841.2	344; 344; 379; 376; 371; 336	Pfam	PF12697; PF12697; PF12697; PF12697; PF12697; PF12697	Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family	IPR000073; IPR000073; IPR000073; IPR000073; IPR000073; IPR000073	Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1
hsd_id_Theobroma_cacao_145	XP_007010329.2; XP_007037930.2	520; 473	Pfam	PF02127; PF02127	Aminopeptidase I zinc metalloprotease (M18); Aminopeptidase I zinc metalloprotease (M18)	IPR001948; IPR001948	Peptidase M18; Peptidase M18
hsd_id_Theobroma_cacao_146	XP_007010371.1; XP_017977070.1; XP_017983120.1; XP_017983118.1	487; 490; 487; 487	Pfam	PF07690; PF07690; PF07690; PF07690	Major Facilitator Superfamily; Major Facilitator Superfamily; Major Facilitator Superfamily; Major Facilitator Superfamily	IPR011701; IPR011701; IPR011701; IPR011701	Major facilitator superfamily; Major facilitator superfamily; Major facilitator superfamily; Major facilitator superfamily
hsd_id_Theobroma_cacao_147	XP_007010413.2; XP_007010415.2; XP_017982601.1	311; 311; 310	Pfam	PF00413, PF01471; PF00413, PF01471; PF00413, PF01471	Matrixin, Putative peptidoglycan binding domain; Matrixin, Putative peptidoglycan binding domain; Matrixin, Putative peptidoglycan binding domain	IPR001818, IPR002477; IPR001818, IPR002477; IPR001818, IPR002477	Peptidase M10, metallopeptidase, Peptidoglycan binding-like; Peptidase M10, metallopeptidase, Peptidoglycan binding-like; Peptidase M10, metallopeptidase, Peptidoglycan binding-like
hsd_id_Theobroma_cacao_148	XP_007010423.2; XP_007049803.2; XP_007034425.2; XP_007024899.1; XP_007035565.1; XP_017974906.1	238; 219; 219; 221; 221; 187	Pfam	PF00957, PF13774; PF13774, PF00957; PF00957, PF13774; PF13774, PF00957; PF00957, PF13774; PF00957, PF13774	Synaptobrevin, Regulated-SNARE-like domain; Regulated-SNARE-like domain, Synaptobrevin; Synaptobrevin, Regulated-SNARE-like domain; Regulated-SNARE-like domain, Synaptobrevin; Synaptobrevin, Regulated-SNARE-like domain; Synaptobrevin, Regulated-SNARE-like domain	IPR001388, IPR010908; IPR010908, IPR001388; IPR001388, IPR010908; IPR010908, IPR001388; IPR001388, IPR010908; IPR001388, IPR010908	Synaptobrevin, Longin domain; Longin domain, Synaptobrevin; Synaptobrevin, Longin domain; Longin domain, Synaptobrevin; Synaptobrevin, Longin domain; Synaptobrevin, Longin domain
hsd_id_Theobroma_cacao_149	XP_007010442.2; XP_007026289.1	293; 290	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_150	XP_007010444.2; XP_007027721.2	213; 222	Pfam	PF00190; PF00190	Cupin; Cupin	IPR006045; IPR006045	Cupin 1; Cupin 1
hsd_id_Theobroma_cacao_151	XP_007010468.1; XP_007027961.2; XP_007045145.2	215; 269; 173	Pfam	PF00293; PF00293; PF00293	NUDIX domain; NUDIX domain; NUDIX domain	IPR000086; IPR000086; IPR000086	NUDIX hydrolase domain; NUDIX hydrolase domain; NUDIX hydrolase domain
hsd_id_Theobroma_cacao_152	XP_007010473.2; XP_007027938.2	846; 857	Pfam	PF02861; PF02861	Clp amino terminal domain, pathogenicity island component; Clp amino terminal domain, pathogenicity island component	IPR004176; IPR004176	Clp,  repeat (R) domain; Clp,  repeat (R) domain
hsd_id_Theobroma_cacao_153	XP_007010477.2; XP_017979601.1	325; 316	Pfam	PF00685; PF00685	Sulfotransferase domain; Sulfotransferase domain	IPR000863; IPR000863	Sulfotransferase domain; Sulfotransferase domain
hsd_id_Theobroma_cacao_154	XP_007010483.1; XP_017982943.1	358; 361	Pfam	PF02485; PF02485	Core-2/I-Branching enzyme; Core-2/I-Branching enzyme	IPR003406; IPR003406	Glycosyl transferase, family 14; Glycosyl transferase, family 14
hsd_id_Theobroma_cacao_155	XP_007010488.2; XP_007028016.2	162; 166	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_156	XP_007010494.1; XP_017976301.1; XP_007027759.2; XP_007028546.2; XP_007040570.2	379; 288; 389; 395; 396	Pfam	PF00462; PF00462; PF00462; PF00462; PF00462	Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin	IPR002109; IPR002109; IPR002109; IPR002109; IPR002109	Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin
hsd_id_Theobroma_cacao_157	XP_007010509.2; XP_017977368.1	454; 463	Pfam	PF02469; PF02469	Fasciclin domain; Fasciclin domain	IPR000782; IPR000782	FAS1 domain; FAS1 domain
hsd_id_Theobroma_cacao_158	XP_007010524.1; XP_007016841.2; XP_007027397.2; XP_017976773.1; XP_017976719.1; XP_017981107.1; XP_007041970.1; XP_017971359.1; XP_007027398.2; XP_007041971.2; XP_007041977.2; XP_017970221.1; XP_017971358.1; XP_007041976.2; XP_017971160.1; XP_017976378.1; XP_017970328.1; XP_007027402.2; XP_007041695.2; XP_007014781.1; XP_017970327.1; XP_017971148.1; XP_017971149.1; XP_017971150.1; XP_007041988.2; XP_017970146.1; XP_007041980.2; XP_017971151.1; XP_017971742.1; XP_007041990.1; XP_017971161.1; XP_007041981.2; XP_017971162.1; XP_007041986.2; XP_017971152.1; XP_007046722.2; XP_017970560.1; XP_007017765.1; XP_007012552.1; XP_017976323.1; XP_017984283.1; XP_007041969.1; XP_007041996.2; XP_017978600.1; XP_007011526.1; XP_007039930.2; XP_017977719.1; XP_007023649.2; XP_007022464.1; XP_017971984.1; XP_007041692.1; XP_017971983.1; XP_017970637.1; XP_017970663.1; XP_007041697.2; XP_017970322.1; XP_007017754.2; XP_017984353.1; XP_017970652.1; XP_017970713.1; XP_017970321.1; XP_007041687.2; XP_017980955.1; XP_017972713.1; XP_007043889.1	101; 130; 164; 128; 129; 117; 93; 94; 138; 95; 95; 97; 95; 95; 95; 128; 95; 116; 149; 100; 106; 98; 134; 98; 98; 96; 98; 96; 100; 96; 93; 79; 79; 79; 79; 104; 104; 104; 159; 123; 125; 101; 160; 159; 161; 163; 167; 173; 147; 149; 147; 149; 148; 150; 148; 152; 150; 115; 140; 149; 167; 143; 122; 180; 154	Pfam	PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519; PF02519	Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein; Auxin responsive protein	IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676; IPR003676	Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA; Small auxin-up RNA
hsd_id_Theobroma_cacao_159	XP_007010526.2; XP_007010529.2	479; 452	Pfam	PF00917; PF00917	MATH domain; MATH domain	IPR002083; IPR002083	MATH/TRAF domain; MATH/TRAF domain
hsd_id_Theobroma_cacao_160	XP_007010542.2; XP_017977553.1; XP_017977047.1; XP_007015579.2; XP_007015581.2; XP_017983610.1; XP_007016181.2	662; 651; 631; 628; 627; 606; 606	Pfam	PF01915, PF00933; PF01915, PF00933; PF00933, PF01915; PF01915, PF00933; PF00933, PF01915; PF01915, PF00933; PF00933, PF01915	Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 N terminal domain, Glycosyl hydrolase family 3 C-terminal domain; Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 N terminal domain, Glycosyl hydrolase family 3 C-terminal domain; Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 N terminal domain, Glycosyl hydrolase family 3 C-terminal domain	IPR002772, IPR001764; IPR002772, IPR001764; IPR001764, IPR002772; IPR002772, IPR001764; IPR001764, IPR002772; IPR002772, IPR001764; IPR001764, IPR002772	Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, N-terminal, Glycoside hydrolase family 3 C-terminal domain; Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, N-terminal, Glycoside hydrolase family 3 C-terminal domain; Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, N-terminal, Glycoside hydrolase family 3 C-terminal domain
hsd_id_Theobroma_cacao_161	XP_017984126.1; XP_007010552.2; XP_017984182.1; XP_017977079.1	256; 256; 260; 263	Pfam	PF02544; PF02544; PF02544; PF02544	3-oxo-5-alpha-steroid 4-dehydrogenase; 3-oxo-5-alpha-steroid 4-dehydrogenase; 3-oxo-5-alpha-steroid 4-dehydrogenase; 3-oxo-5-alpha-steroid 4-dehydrogenase	IPR001104; IPR001104; IPR001104; IPR001104	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal
hsd_id_Theobroma_cacao_162	XP_007010617.2; XP_017979666.1; XP_017980143.1; XP_017979661.1; XP_017979663.1; XP_007010624.2; XP_017980142.1	1334; 1371; 1268; 1332; 1435; 1510; 1563	Pfam	PF00931; PF00931; PF00931; PF00931; PF00931; PF00931; PF00931	NB-ARC domain; NB-ARC domain; NB-ARC domain; NB-ARC domain; NB-ARC domain; NB-ARC domain; NB-ARC domain	IPR002182; IPR002182; IPR002182; IPR002182; IPR002182; IPR002182; IPR002182	NB-ARC; NB-ARC; NB-ARC; NB-ARC; NB-ARC; NB-ARC; NB-ARC
hsd_id_Theobroma_cacao_163	XP_007010626.1; XP_007010627.2	158; 158	Pfam	PF08312; PF08312	cwf21 domain; cwf21 domain	IPR013170; IPR013170	mRNA splicing factor Cwf21 domain; mRNA splicing factor Cwf21 domain
hsd_id_Theobroma_cacao_164	XP_007010656.2; XP_017970512.1; XP_007032458.1; XP_007028653.1; XP_017978037.1; XP_017983324.1	412; 392; 387; 421; 370; 354	Pfam	PF00847; PF00847; PF00847; PF00847; PF00847; PF00847	AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain	IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471	AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain
hsd_id_Theobroma_cacao_165	XP_007010661.2; XP_017972957.1; XP_007038641.2; XP_007038647.2; XP_017972953.1; XP_017972947.1; XP_017972939.1; XP_007034169.2; XP_007034172.2; XP_017974415.1; XP_007045724.2; XP_007023038.1; XP_007023037.2; XP_017978174.1; XP_017978118.1; XP_017979469.1; XP_017979329.1; XP_007033584.2; XP_017979047.1; XP_007023052.2; XP_017979377.1; XP_017978050.1; XP_017978942.1; XP_007023051.2; XP_007023044.2; XP_007023050.2; XP_017978506.1; XP_017978464.1; XP_017978941.1; XP_017978141.1; XP_017979417.1	532; 532; 532; 541; 538; 542; 549; 535; 529; 535; 542; 529; 534; 521; 528; 546; 530; 539; 533; 541; 547; 536; 534; 534; 537; 534; 534; 534; 548; 538; 531	Pfam	PF01565, PF08031; PF08031, PF01565; PF08031, PF01565; PF08031, PF01565; PF08031, PF01565; PF08031, PF01565; PF08031, PF01565; PF01565, PF08031; PF01565, PF08031; PF01565, PF08031; PF01565, PF08031; PF01565, PF08031; PF01565, PF08031; PF08031, PF01565; PF01565, PF08031; PF08031, PF01565; PF08031, PF01565; PF08031, PF01565; PF08031, PF01565; PF01565, PF08031; PF08031, PF01565; PF01565, PF08031; PF01565, PF08031; PF08031, PF01565; PF08031, PF01565; PF01565, PF08031; PF01565, PF08031; PF08031, PF01565; PF08031, PF01565; PF08031, PF01565; PF08031, PF01565	FAD binding domain, Berberine and berberine like; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain; FAD binding domain, Berberine and berberine like; FAD binding domain, Berberine and berberine like; FAD binding domain, Berberine and berberine like; FAD binding domain, Berberine and berberine like; FAD binding domain, Berberine and berberine like; FAD binding domain, Berberine and berberine like; Berberine and berberine like, FAD binding domain; FAD binding domain, Berberine and berberine like; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain; FAD binding domain, Berberine and berberine like; Berberine and berberine like, FAD binding domain; FAD binding domain, Berberine and berberine like; FAD binding domain, Berberine and berberine like; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain; FAD binding domain, Berberine and berberine like; FAD binding domain, Berberine and berberine like; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain; Berberine and berberine like, FAD binding domain	IPR006094, IPR012951; IPR012951, IPR006094; IPR012951, IPR006094; IPR012951, IPR006094; IPR012951, IPR006094; IPR012951, IPR006094; IPR012951, IPR006094; IPR006094, IPR012951; IPR006094, IPR012951; IPR006094, IPR012951; IPR006094, IPR012951; IPR006094, IPR012951; IPR006094, IPR012951; IPR012951, IPR006094; IPR006094, IPR012951; IPR012951, IPR006094; IPR012951, IPR006094; IPR012951, IPR006094; IPR012951, IPR006094; IPR006094, IPR012951; IPR012951, IPR006094; IPR006094, IPR012951; IPR006094, IPR012951; IPR012951, IPR006094; IPR012951, IPR006094; IPR006094, IPR012951; IPR006094, IPR012951; IPR012951, IPR006094; IPR012951, IPR006094; IPR012951, IPR006094; IPR012951, IPR006094	FAD linked oxidase, N-terminal, Berberine/berberine-like; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal; FAD linked oxidase, N-terminal, Berberine/berberine-like; FAD linked oxidase, N-terminal, Berberine/berberine-like; FAD linked oxidase, N-terminal, Berberine/berberine-like; FAD linked oxidase, N-terminal, Berberine/berberine-like; FAD linked oxidase, N-terminal, Berberine/berberine-like; FAD linked oxidase, N-terminal, Berberine/berberine-like; Berberine/berberine-like, FAD linked oxidase, N-terminal; FAD linked oxidase, N-terminal, Berberine/berberine-like; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal; FAD linked oxidase, N-terminal, Berberine/berberine-like; Berberine/berberine-like, FAD linked oxidase, N-terminal; FAD linked oxidase, N-terminal, Berberine/berberine-like; FAD linked oxidase, N-terminal, Berberine/berberine-like; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal; FAD linked oxidase, N-terminal, Berberine/berberine-like; FAD linked oxidase, N-terminal, Berberine/berberine-like; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal; Berberine/berberine-like, FAD linked oxidase, N-terminal
hsd_id_Theobroma_cacao_166	XP_007010675.2; XP_017971377.1; XP_017970295.1; XP_017985225.1; XP_007050534.2; XP_007034814.2; XP_017977653.1	477; 495; 437; 492; 561; 579; 541	Pfam	PF03372; PF03372; PF03372; PF03372; PF03372; PF03372; PF03372	Endonuclease/Exonuclease/phosphatase family; Endonuclease/Exonuclease/phosphatase family; Endonuclease/Exonuclease/phosphatase family; Endonuclease/Exonuclease/phosphatase family; Endonuclease/Exonuclease/phosphatase family; Endonuclease/Exonuclease/phosphatase family; Endonuclease/Exonuclease/phosphatase family	IPR005135; IPR005135; IPR005135; IPR005135; IPR005135; IPR005135; IPR005135	Endonuclease/exonuclease/phosphatase; Endonuclease/exonuclease/phosphatase; Endonuclease/exonuclease/phosphatase; Endonuclease/exonuclease/phosphatase; Endonuclease/exonuclease/phosphatase; Endonuclease/exonuclease/phosphatase; Endonuclease/exonuclease/phosphatase
hsd_id_Theobroma_cacao_167	XP_007010697.2; XP_007010733.2	140; 143	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_168	XP_007010713.2; XP_017984132.1	392; 392	Pfam	PF02536; PF02536	mTERF; mTERF	IPR003690; IPR003690	Transcription termination factor, mitochondrial/chloroplastic; Transcription termination factor, mitochondrial/chloroplastic
hsd_id_Theobroma_cacao_169	XP_007010734.2; XP_017984517.1	257; 265	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_170	XP_007010737.2; XP_017973699.1	208; 221	Pfam	PF01849, PF19026; PF19026, PF01849	NAC domain, HYPK UBA domain; HYPK UBA domain, NAC domain	IPR002715, IPR044034; IPR044034, IPR002715	Nascent polypeptide-associated complex NAC domain, Nascent polypeptide-associated complex subunit alpha-like, UBA domain; Nascent polypeptide-associated complex subunit alpha-like, UBA domain, Nascent polypeptide-associated complex NAC domain
hsd_id_Theobroma_cacao_171	XP_007010765.2; XP_007010767.2	312; 312	Pfam	PF00656; PF00656	Caspase domain; Caspase domain	-; -	-; -
hsd_id_Theobroma_cacao_172	XP_007010771.2; XP_007015328.1	297; 277	Pfam	PF00808; PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone	IPR003958; IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain
hsd_id_Theobroma_cacao_173	XP_007010774.1; XP_007028256.2	239; 209	Pfam	PF16845; PF16845	Aspartic acid proteinase inhibitor; Aspartic acid proteinase inhibitor	IPR000010; IPR000010	Cystatin domain; Cystatin domain
hsd_id_Theobroma_cacao_174	XP_007010793.2; XP_007019620.2	341; 343	Pfam	PF01633; PF01633	Choline/ethanolamine kinase; Choline/ethanolamine kinase	-; -	-; -
hsd_id_Theobroma_cacao_175	XP_007010821.2; XP_007028479.2; XP_017980386.1; XP_017977537.1; XP_017984189.1; XP_017980387.1; XP_017979818.1; XP_017976227.1; XP_017970577.1; XP_007045763.2	349; 345; 336; 339; 343; 335; 335; 343; 331; 395	Pfam	PF00685; PF00685; PF00685; PF00685; PF00685; PF00685; PF00685; PF00685; PF00685; PF00685	Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain	IPR000863; IPR000863; IPR000863; IPR000863; IPR000863; IPR000863; IPR000863; IPR000863; IPR000863; IPR000863	Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain
hsd_id_Theobroma_cacao_176	XP_007010839.2; XP_017984494.1; XP_017984491.1; XP_017984490.1; XP_007039886.2; XP_007052129.2; XP_007039887.1; XP_007011824.1; XP_007052128.2; XP_007039884.2; XP_017983592.1; XP_007039885.2	232; 134; 134; 135; 142; 139; 132; 133; 135; 134; 213; 241	Pfam	PF14547; PF14547; PF14547; PF14547; PF14547; PF14547; PF14547; PF14547; PF14547; PF14547; PF14547; PF14547	Hydrophobic seed protein; Hydrophobic seed protein; Hydrophobic seed protein; Hydrophobic seed protein; Hydrophobic seed protein; Hydrophobic seed protein; Hydrophobic seed protein; Hydrophobic seed protein; Hydrophobic seed protein; Hydrophobic seed protein; Hydrophobic seed protein; Hydrophobic seed protein	IPR027923; IPR027923; IPR027923; IPR027923; IPR027923; IPR027923; IPR027923; IPR027923; IPR027923; IPR027923; IPR027923; IPR027923	Hydrophobic seed protein domain; Hydrophobic seed protein domain; Hydrophobic seed protein domain; Hydrophobic seed protein domain; Hydrophobic seed protein domain; Hydrophobic seed protein domain; Hydrophobic seed protein domain; Hydrophobic seed protein domain; Hydrophobic seed protein domain; Hydrophobic seed protein domain; Hydrophobic seed protein domain; Hydrophobic seed protein domain
hsd_id_Theobroma_cacao_177	XP_007010857.1; XP_017983035.1	718; 787	Pfam	PF02516; PF02516	Oligosaccharyl transferase STT3 subunit; Oligosaccharyl transferase STT3 subunit	IPR003674; IPR003674	Oligosaccharyl transferase, STT3 subunit; Oligosaccharyl transferase, STT3 subunit
hsd_id_Theobroma_cacao_178	XP_007010861.1; XP_007010866.2; XP_007034970.2	176; 176; 190	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_179	XP_007010917.1; XP_007028444.1	144; 154	Pfam	PF05678; PF05678	VQ motif; VQ motif	IPR008889; IPR008889	VQ; VQ
hsd_id_Theobroma_cacao_180	XP_007010940.2; XP_017984157.1	318; 290	Pfam	PF00931, PF18052; PF00931, PF18052	NB-ARC domain, Rx N-terminal domain; NB-ARC domain, Rx N-terminal domain	IPR002182, IPR041118; IPR002182, IPR041118	NB-ARC, Rx, N-terminal; NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_181	XP_007010960.2; XP_017981451.1	429; 435	Pfam	PF14541, PF14543; PF14543, PF14541	Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal	IPR032799, IPR032861; IPR032861, IPR032799	Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal
hsd_id_Theobroma_cacao_182	XP_007010967.2; XP_017976633.1; XP_007018959.2	742; 770; 763	Pfam	PF02493, PF01504; PF01504, PF02493; PF02493, PF01504	MORN repeat, Phosphatidylinositol-4-phosphate 5-Kinase; Phosphatidylinositol-4-phosphate 5-Kinase, MORN repeat; MORN repeat, Phosphatidylinositol-4-phosphate 5-Kinase	IPR003409, IPR002498; IPR002498, IPR003409; IPR003409, IPR002498	MORN motif, Phosphatidylinositol-4-phosphate 5-kinase, core; Phosphatidylinositol-4-phosphate 5-kinase, core, MORN motif; MORN motif, Phosphatidylinositol-4-phosphate 5-kinase, core
hsd_id_Theobroma_cacao_183	XP_007010977.2; XP_017980903.1; XP_017981255.1; XP_017981256.1; XP_017980951.1; XP_017985387.1; XP_017972572.1; XP_017970134.1; XP_007048751.2; XP_017971029.1; XP_007044859.2; XP_017972451.1; XP_007036492.2; XP_017973513.1; XP_017969892.1	502; 500; 500; 499; 433; 518; 362; 511; 510; 478; 352; 421; 512; 535; 502	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_184	XP_007011003.2; XP_017984381.1	581; 568	Pfam	PF00854; PF00854	POT family; POT family	IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_185	XP_007011050.2; XP_007030233.1	242; 239	Pfam	PF00230; PF00230	Major intrinsic protein; Major intrinsic protein	IPR000425; IPR000425	Major intrinsic protein; Major intrinsic protein
hsd_id_Theobroma_cacao_186	XP_007011051.1; XP_007028513.2; XP_017981873.1; XP_007036075.2; XP_017984032.1; XP_017970530.1	188; 213; 251; 228; 151; 237	Pfam	PF00072; PF00072; PF00072; PF00072; PF00072; PF00072	Response regulator receiver domain; Response regulator receiver domain; Response regulator receiver domain; Response regulator receiver domain; Response regulator receiver domain; Response regulator receiver domain	IPR001789; IPR001789; IPR001789; IPR001789; IPR001789; IPR001789	Signal transduction response regulator, receiver domain; Signal transduction response regulator, receiver domain; Signal transduction response regulator, receiver domain; Signal transduction response regulator, receiver domain; Signal transduction response regulator, receiver domain; Signal transduction response regulator, receiver domain
hsd_id_Theobroma_cacao_187	XP_007011052.2; XP_007015363.1; XP_007023816.1	250; 243; 243	Pfam	PF08079, PF00327; PF08079, PF00327; PF08079, PF00327	Ribosomal L30 N-terminal domain, Ribosomal protein L30p/L7e; Ribosomal L30 N-terminal domain, Ribosomal protein L30p/L7e; Ribosomal L30 N-terminal domain, Ribosomal protein L30p/L7e	IPR012988, IPR016082; IPR012988, IPR016082; IPR012988, IPR016082	Ribosomal protein L30, N-terminal, Ribosomal protein L30, ferredoxin-like fold domain; Ribosomal protein L30, N-terminal, Ribosomal protein L30, ferredoxin-like fold domain; Ribosomal protein L30, N-terminal, Ribosomal protein L30, ferredoxin-like fold domain
hsd_id_Theobroma_cacao_188	XP_007011067.2; XP_007016949.1; XP_017984960.1	272; 242; 244	Pfam	PF00462; PF00462; PF00462	Glutaredoxin; Glutaredoxin; Glutaredoxin	IPR002109; IPR002109; IPR002109	Glutaredoxin; Glutaredoxin; Glutaredoxin
hsd_id_Theobroma_cacao_189	XP_007011074.2; XP_007038848.2; XP_017984389.1; XP_017984521.1; XP_017984392.1; XP_007011087.2	237; 235; 242; 243; 239; 240	Pfam	PF00445; PF00445; PF00445; PF00445; PF00445; PF00445	Ribonuclease T2 family; Ribonuclease T2 family; Ribonuclease T2 family; Ribonuclease T2 family; Ribonuclease T2 family; Ribonuclease T2 family	IPR001568; IPR001568; IPR001568; IPR001568; IPR001568; IPR001568	Ribonuclease T2-like; Ribonuclease T2-like; Ribonuclease T2-like; Ribonuclease T2-like; Ribonuclease T2-like; Ribonuclease T2-like
hsd_id_Theobroma_cacao_190	XP_007011077.2; XP_007038849.2	242; 241	Pfam	PF00445; PF00445	Ribonuclease T2 family; Ribonuclease T2 family	IPR001568; IPR001568	Ribonuclease T2-like; Ribonuclease T2-like
hsd_id_Theobroma_cacao_191	XP_007011089.2; XP_017980786.1	272; 273	Pfam	PF16166; PF16166	Chloroplast import apparatus Tic20-like; Chloroplast import apparatus Tic20-like	IPR005691; IPR005691	Chloroplast protein import component Tic20; Chloroplast protein import component Tic20
hsd_id_Theobroma_cacao_192	XP_007011098.2; XP_007030514.2	193; 197	Pfam	PF04970; PF04970	Lecithin retinol acyltransferase; Lecithin retinol acyltransferase	IPR007053; IPR007053	LRAT domain; LRAT domain
hsd_id_Theobroma_cacao_193	XP_007011101.2; XP_007051539.1; XP_007039050.1; XP_007029035.2; XP_017984949.1	304; 328; 338; 307; 308	Pfam	PF03145; PF03145; PF03145; PF03145; PF03145	Seven in absentia protein family; Seven in absentia protein family; Seven in absentia protein family; Seven in absentia protein family; Seven in absentia protein family	IPR018121; IPR018121; IPR018121; IPR018121; IPR018121	Seven-in-absentia protein, TRAF-like domain; Seven-in-absentia protein, TRAF-like domain; Seven-in-absentia protein, TRAF-like domain; Seven-in-absentia protein, TRAF-like domain; Seven-in-absentia protein, TRAF-like domain
hsd_id_Theobroma_cacao_194	XP_007011114.2; XP_007028544.2	235; 228	Pfam	PF03871, PF01191; PF03871, PF01191	RNA polymerase Rpb5, N-terminal domain, RNA polymerase Rpb5, C-terminal domain; RNA polymerase Rpb5, N-terminal domain, RNA polymerase Rpb5, C-terminal domain	IPR005571, IPR000783; IPR005571, IPR000783	RNA polymerase, Rpb5, N-terminal, RNA polymerase, subunit H/Rpb5 C-terminal; RNA polymerase, Rpb5, N-terminal, RNA polymerase, subunit H/Rpb5 C-terminal
hsd_id_Theobroma_cacao_195	XP_007011117.2; XP_017979785.1	959; 954	Pfam	PF08263, PF00560, PF13855; PF08263, PF13855, PF00560	Leucine rich repeat N-terminal domain, Leucine Rich Repeat, Leucine rich repeat; Leucine rich repeat N-terminal domain, Leucine rich repeat, Leucine Rich Repeat	IPR013210, IPR001611, IPR001611; IPR013210, IPR001611, IPR001611	Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat
hsd_id_Theobroma_cacao_196	XP_007011136.2; XP_017972099.1; XP_007042481.2; XP_017970670.1; XP_007042483.2; XP_007029404.2; XP_007042490.2; XP_007014491.2	482; 492; 485; 485; 489; 484; 484; 487	Pfam	PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_197	XP_007011155.2; XP_007011159.2; XP_017984497.1; XP_007045551.2; XP_017974541.1; XP_017972237.1; XP_007045550.2; XP_007045545.2; XP_007045546.2; XP_007020988.2	361; 361; 383; 362; 366; 379; 355; 378; 371; 349	Pfam	PF03492; PF03492; PF03492; PF03492; PF03492; PF03492; PF03492; PF03492; PF03492; PF03492	SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase	IPR005299; IPR005299; IPR005299; IPR005299; IPR005299; IPR005299; IPR005299; IPR005299; IPR005299; IPR005299	SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase
hsd_id_Theobroma_cacao_198	XP_007011186.1; XP_007014788.1	92; 93	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_199	XP_007011197.2; XP_017984930.1; XP_017984929.1	297; 301; 316	Pfam	PF00651; PF00651; PF00651	BTB/POZ domain; BTB/POZ domain; BTB/POZ domain	IPR000210; IPR000210; IPR000210	BTB/POZ domain; BTB/POZ domain; BTB/POZ domain
hsd_id_Theobroma_cacao_200	XP_007011212.1; XP_007011215.2; XP_007011229.1; XP_017983831.1; XP_017983939.1; XP_007048724.2; XP_007033589.2; XP_017975631.1; XP_017983412.1; XP_007033587.2; XP_017974387.1; XP_007046814.2; XP_007017633.1; XP_007029017.2; XP_007014796.2; XP_017969991.1; XP_007045348.1; XP_017970575.1; XP_007039570.2; XP_007047175.2; XP_017970036.1; XP_017975223.1; XP_007042356.2; XP_017983624.1; XP_007014794.2; XP_007014795.1; XP_007043009.2; XP_017971757.1; XP_017970613.1; XP_007043005.2; XP_007043003.2; XP_017970636.1; XP_017970168.1; XP_017983855.1; XP_007019375.1; XP_017971845.1	317; 317; 321; 326; 325; 320; 322; 317; 320; 316; 316; 333; 348; 331; 329; 330; 327; 330; 331; 327; 329; 332; 334; 346; 322; 319; 328; 326; 328; 326; 325; 325; 328; 333; 335; 287	Pfam	PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141	Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase	IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016	Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase
hsd_id_Theobroma_cacao_201	XP_007011220.2; XP_017984358.1; XP_017975434.1	584; 605; 548	Pfam	PF00854; PF00854; PF00854	POT family; POT family; POT family	IPR000109; IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_202	XP_007011236.2; XP_007021736.2	389; 416	Pfam	PF01208; PF01208	Uroporphyrinogen decarboxylase (URO-D); Uroporphyrinogen decarboxylase (URO-D)	IPR000257; IPR000257	Uroporphyrinogen decarboxylase (URO-D); Uroporphyrinogen decarboxylase (URO-D)
hsd_id_Theobroma_cacao_203	XP_007011240.2; XP_007033570.2; XP_007017047.2; XP_007025354.2; XP_007011954.2; XP_007011728.2; XP_017977979.1; XP_017978412.1; XP_007024999.2; XP_017985494.1; XP_017982864.1; XP_007017059.2; XP_007033564.2; XP_007013470.2; XP_007018316.2; XP_007035994.2; XP_007014128.2	450; 469; 473; 474; 431; 450; 449; 472; 459; 446; 439; 416; 436; 445; 449; 455; 469	Pfam	PF03822, PF00069; PF03822, PF00069; PF03822, PF00069; PF03822, PF00069; PF00069, PF03822; PF00069, PF03822; PF00069, PF03822; PF00069, PF03822; PF00069, PF03822; PF03822, PF00069; PF00069, PF03822; PF00069, PF03822; PF00069, PF03822; PF03822, PF00069; PF00069, PF03822; PF03822, PF00069; PF00069, PF03822	NAF domain, Protein kinase domain; NAF domain, Protein kinase domain; NAF domain, Protein kinase domain; NAF domain, Protein kinase domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; NAF domain, Protein kinase domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; NAF domain, Protein kinase domain; Protein kinase domain, NAF domain; NAF domain, Protein kinase domain; Protein kinase domain, NAF domain	IPR004041, IPR000719; IPR004041, IPR000719; IPR004041, IPR000719; IPR004041, IPR000719; IPR000719, IPR004041; IPR000719, IPR004041; IPR000719, IPR004041; IPR000719, IPR004041; IPR000719, IPR004041; IPR004041, IPR000719; IPR000719, IPR004041; IPR000719, IPR004041; IPR000719, IPR004041; IPR004041, IPR000719; IPR000719, IPR004041; IPR004041, IPR000719; IPR000719, IPR004041	NAF domain, Protein kinase domain; NAF domain, Protein kinase domain; NAF domain, Protein kinase domain; NAF domain, Protein kinase domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; NAF domain, Protein kinase domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; Protein kinase domain, NAF domain; NAF domain, Protein kinase domain; Protein kinase domain, NAF domain; NAF domain, Protein kinase domain; Protein kinase domain, NAF domain
hsd_id_Theobroma_cacao_204	XP_007011246.1; XP_017974171.1; XP_017972717.1	576; 556; 545	Pfam	PF00860; PF00860; PF00860	Permease family; Permease family; Permease family	IPR006043; IPR006043; IPR006043	Nucleobase cation symporter 2 family; Nucleobase cation symporter 2 family; Nucleobase cation symporter 2 family
hsd_id_Theobroma_cacao_205	XP_007011258.2; XP_017975596.1; XP_007041553.2; XP_007024670.2	564; 515; 518; 511	Pfam	PF06814; PF06814; PF06814; PF06814	Lung seven transmembrane receptor; Lung seven transmembrane receptor; Lung seven transmembrane receptor; Lung seven transmembrane receptor	IPR009637; IPR009637; IPR009637; IPR009637	Transmembrane protein GPR107/GPR108-like; Transmembrane protein GPR107/GPR108-like; Transmembrane protein GPR107/GPR108-like; Transmembrane protein GPR107/GPR108-like
hsd_id_Theobroma_cacao_206	XP_007011264.2; XP_017984420.1; XP_017984699.1; XP_017984422.1; XP_017984694.1; XP_017984419.1; XP_017984696.1	388; 381; 382; 368; 385; 347; 384	Pfam	PF00646; PF00646; PF00646; PF00646; PF00646; PF00646; PF00646	F-box domain; F-box domain; F-box domain; F-box domain; F-box domain; F-box domain; F-box domain	IPR001810; IPR001810; IPR001810; IPR001810; IPR001810; IPR001810; IPR001810	F-box domain; F-box domain; F-box domain; F-box domain; F-box domain; F-box domain; F-box domain
hsd_id_Theobroma_cacao_207	XP_007011296.2; XP_017984495.1; XP_017984127.1; XP_017984426.1; XP_017984427.1; XP_007017085.1	554; 554; 553; 553; 546; 557	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_208	XP_007011319.1; XP_007017076.2; XP_017971673.1; XP_017972349.1; XP_007099524.1; XP_017972333.1; XP_017976972.1; XP_007022729.2; XP_007016396.1; XP_007027012.2; XP_017985150.1; XP_017979765.1; XP_007032707.2; XP_017977351.1; XP_007043104.1; XP_017980664.1; XP_017975397.1; XP_017973729.1; XP_017981310.1	253; 254; 250; 248; 257; 224; 247; 250; 258; 264; 259; 301; 255; 295; 251; 256; 265; 267; 365	Pfam	PF01357, PF03330; PF01357, PF03330; PF01357, PF03330; PF03330, PF01357; PF03330, PF01357; PF03330, PF01357; PF01357, PF03330; PF01357, PF03330; PF01357, PF03330; PF03330, PF01357; PF03330, PF01357; PF01357, PF03330; PF01357, PF03330; PF03330, PF01357; PF03330, PF01357; PF01357, PF03330; PF01357, PF03330; PF03330, PF01357; PF03330, PF01357	Expansin C-terminal domain, Lytic transglycolase; Expansin C-terminal domain, Lytic transglycolase; Expansin C-terminal domain, Lytic transglycolase; Lytic transglycolase, Expansin C-terminal domain; Lytic transglycolase, Expansin C-terminal domain; Lytic transglycolase, Expansin C-terminal domain; Expansin C-terminal domain, Lytic transglycolase; Expansin C-terminal domain, Lytic transglycolase; Expansin C-terminal domain, Lytic transglycolase; Lytic transglycolase, Expansin C-terminal domain; Lytic transglycolase, Expansin C-terminal domain; Expansin C-terminal domain, Lytic transglycolase; Expansin C-terminal domain, Lytic transglycolase; Lytic transglycolase, Expansin C-terminal domain; Lytic transglycolase, Expansin C-terminal domain; Expansin C-terminal domain, Lytic transglycolase; Expansin C-terminal domain, Lytic transglycolase; Lytic transglycolase, Expansin C-terminal domain; Lytic transglycolase, Expansin C-terminal domain	IPR007117, IPR009009; IPR007117, IPR009009; IPR007117, IPR009009; IPR009009, IPR007117; IPR009009, IPR007117; IPR009009, IPR007117; IPR007117, IPR009009; IPR007117, IPR009009; IPR007117, IPR009009; IPR009009, IPR007117; IPR009009, IPR007117; IPR007117, IPR009009; IPR007117, IPR009009; IPR009009, IPR007117; IPR009009, IPR007117; IPR007117, IPR009009; IPR007117, IPR009009; IPR009009, IPR007117; IPR009009, IPR007117	Expansin, cellulose-binding-like domain, RlpA-like protein, double-psi beta-barrel domain; Expansin, cellulose-binding-like domain, RlpA-like protein, double-psi beta-barrel domain; Expansin, cellulose-binding-like domain, RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain; Expansin, cellulose-binding-like domain, RlpA-like protein, double-psi beta-barrel domain; Expansin, cellulose-binding-like domain, RlpA-like protein, double-psi beta-barrel domain; Expansin, cellulose-binding-like domain, RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain; Expansin, cellulose-binding-like domain, RlpA-like protein, double-psi beta-barrel domain; Expansin, cellulose-binding-like domain, RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain; Expansin, cellulose-binding-like domain, RlpA-like protein, double-psi beta-barrel domain; Expansin, cellulose-binding-like domain, RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain
hsd_id_Theobroma_cacao_209	XP_007011343.1; XP_007017070.1	128; 128	Pfam	PF01283; PF01283	Ribosomal protein S26e; Ribosomal protein S26e	IPR000892; IPR000892	Ribosomal protein S26e; Ribosomal protein S26e
hsd_id_Theobroma_cacao_210	XP_007011365.2; XP_007017089.1; XP_017983134.1	519; 505; 535	Pfam	PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_211	XP_007011375.1; XP_017975419.1	347; 367	Pfam	PF08711, PF07500, PF01096; PF07500, PF08711, PF01096	TFIIS helical bundle-like domain, Transcription factor S-II (TFIIS), central domain, Transcription factor S-II (TFIIS); Transcription factor S-II (TFIIS), central domain, TFIIS helical bundle-like domain, Transcription factor S-II (TFIIS)	IPR017923, IPR003618, IPR001222; IPR003618, IPR017923, IPR001222	Transcription factor IIS, N-terminal, Transcription elongation factor S-II, central domain, Zinc finger, TFIIS-type; Transcription elongation factor S-II, central domain, Transcription factor IIS, N-terminal, Zinc finger, TFIIS-type
hsd_id_Theobroma_cacao_212	XP_007011387.2; XP_017974062.1; XP_007035103.2; XP_017977305.1; XP_017974286.1; XP_007019007.1; XP_007035106.2; XP_007018685.2	529; 533; 537; 539; 533; 534; 525; 543	Pfam	PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083	Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter	IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828	Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like
hsd_id_Theobroma_cacao_213	XP_007011395.1; XP_007017106.1	220; 220	Pfam	PF00252; PF00252	Ribosomal protein L16p/L10e; Ribosomal protein L16p/L10e	IPR016180; IPR016180	Ribosomal protein L10e/L16; Ribosomal protein L10e/L16
hsd_id_Theobroma_cacao_214	XP_007011424.1; XP_007011621.2; XP_007017115.2; XP_017984110.1; XP_017969739.1; XP_007052389.2; XP_017984536.1; XP_017984195.1; XP_007016492.2	523; 520; 514; 516; 521; 511; 516; 516; 510	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_215	XP_007011429.2; XP_017975325.1	473; 455	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_216	XP_007011441.2; XP_007052152.2	406; 410	Pfam	PF03478; PF03478	Protein of unknown function (DUF295); Protein of unknown function (DUF295)	IPR005174; IPR005174	Domain unknown function DUF295; Domain unknown function DUF295
hsd_id_Theobroma_cacao_217	XP_007011473.1; XP_017982326.1; XP_017973833.1; XP_007026235.2	419; 445; 348; 373	Pfam	PF07714; PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_218	XP_007011485.1; XP_017978260.1	198; 203	Pfam	PF06749; PF06749	Protein of unknown function (DUF1218); Protein of unknown function (DUF1218)	IPR009606; IPR009606	Modifying wall lignin-1/2; Modifying wall lignin-1/2
hsd_id_Theobroma_cacao_219	XP_007011508.2; XP_007050017.1; XP_017981484.1	322; 307; 316	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_220	XP_007011558.2; XP_017977994.1	175; 136	Pfam	PF08555; PF08555	Eukaryotic family of unknown function (DUF1754); Eukaryotic family of unknown function (DUF1754)	IPR013865; IPR013865	Protein FAM32A; Protein FAM32A
hsd_id_Theobroma_cacao_221	XP_007011563.2; XP_007014385.2	391; 389	Pfam	PF02485; PF02485	Core-2/I-Branching enzyme; Core-2/I-Branching enzyme	IPR003406; IPR003406	Glycosyl transferase, family 14; Glycosyl transferase, family 14
hsd_id_Theobroma_cacao_222	XP_007011570.1; XP_017974763.1; XP_017982496.1	99; 145; 124	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_223	XP_007011580.1; XP_017969389.1; XP_007018946.1; XP_017978288.1; XP_017971183.1	311; 380; 311; 380; 362	Pfam	PF07800; PF07800; PF07800; PF07800; PF07800	Protein of unknown function (DUF1644); Protein of unknown function (DUF1644); Protein of unknown function (DUF1644); Protein of unknown function (DUF1644); Protein of unknown function (DUF1644)	IPR012866; IPR012866; IPR012866; IPR012866; IPR012866	Protein of unknown function DUF1644; Protein of unknown function DUF1644; Protein of unknown function DUF1644; Protein of unknown function DUF1644; Protein of unknown function DUF1644
hsd_id_Theobroma_cacao_224	XP_007011592.2; XP_007014221.2; XP_007012006.2; XP_017978099.1; XP_017973368.1; XP_017975017.1; XP_007024799.2; XP_017974091.1	954; 954; 951; 953; 956; 956; 952; 966	Pfam	PF00702, PF00690, PF00122; PF00122, PF00690, PF00702; PF00702, PF00690, PF00122; PF00122, PF00690, PF00702; PF00690, PF00702, PF00122; PF00690, PF00122, PF00702; PF00690, PF00702, PF00122; PF00122, PF00690, PF00702	haloacid dehalogenase-like hydrolase, Cation transporter/ATPase, N-terminus, E1-E2 ATPase; E1-E2 ATPase, Cation transporter/ATPase, N-terminus, haloacid dehalogenase-like hydrolase; haloacid dehalogenase-like hydrolase, Cation transporter/ATPase, N-terminus, E1-E2 ATPase; E1-E2 ATPase, Cation transporter/ATPase, N-terminus, haloacid dehalogenase-like hydrolase; Cation transporter/ATPase, N-terminus, haloacid dehalogenase-like hydrolase, E1-E2 ATPase; Cation transporter/ATPase, N-terminus, E1-E2 ATPase, haloacid dehalogenase-like hydrolase; Cation transporter/ATPase, N-terminus, haloacid dehalogenase-like hydrolase, E1-E2 ATPase; E1-E2 ATPase, Cation transporter/ATPase, N-terminus, haloacid dehalogenase-like hydrolase	-, IPR004014, -; -, IPR004014, -; -, IPR004014, -; -, IPR004014, -; IPR004014, -, -; IPR004014, -, -; IPR004014, -, -; -, IPR004014, -	-, Cation-transporting P-type ATPase, N-terminal, -; -, Cation-transporting P-type ATPase, N-terminal, -; -, Cation-transporting P-type ATPase, N-terminal, -; -, Cation-transporting P-type ATPase, N-terminal, -; Cation-transporting P-type ATPase, N-terminal, -, -; Cation-transporting P-type ATPase, N-terminal, -, -; Cation-transporting P-type ATPase, N-terminal, -, -; -, Cation-transporting P-type ATPase, N-terminal, -
hsd_id_Theobroma_cacao_225	XP_007011594.2; XP_007014305.2; XP_017969307.1; XP_007031900.2; XP_017974805.1; XP_017974820.1; XP_007036111.2; XP_007044498.2; XP_007031366.1	324; 327; 330; 324; 323; 323; 330; 331; 325	Pfam	PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141; PF00141	Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase; Peroxidase	IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016; IPR002016	Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase
hsd_id_Theobroma_cacao_226	XP_007011597.2; XP_017976844.1	549; 552	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_227	XP_007011606.1; XP_007014488.1	66; 67	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_228	XP_007011612.2; XP_007012437.2	241; 247	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_229	XP_007011642.2; XP_017982103.1; XP_017982549.1; XP_017982249.1; XP_017982250.1	980; 978; 932; 961; 961	Pfam	PF00497, PF01094, PF00060; PF00060, PF01094, PF00497; PF00060, PF00497, PF01094; PF00060, PF01094, PF00497; PF00497, PF00060, PF01094	Bacterial extracellular solute-binding proteins, family 3, Receptor family ligand binding region, Ligand-gated ion channel; Ligand-gated ion channel, Receptor family ligand binding region, Bacterial extracellular solute-binding proteins, family 3; Ligand-gated ion channel, Bacterial extracellular solute-binding proteins, family 3, Receptor family ligand binding region; Ligand-gated ion channel, Receptor family ligand binding region, Bacterial extracellular solute-binding proteins, family 3; Bacterial extracellular solute-binding proteins, family 3, Ligand-gated ion channel, Receptor family ligand binding region	IPR001638, IPR001828, IPR001320; IPR001320, IPR001828, IPR001638; IPR001320, IPR001638, IPR001828; IPR001320, IPR001828, IPR001638; IPR001638, IPR001320, IPR001828	Solute-binding protein  family 3/N-terminal domain of MltF, Receptor, ligand binding region, Ionotropic glutamate receptor; Ionotropic glutamate receptor, Receptor, ligand binding region, Solute-binding protein  family 3/N-terminal domain of MltF; Ionotropic glutamate receptor, Solute-binding protein  family 3/N-terminal domain of MltF, Receptor, ligand binding region; Ionotropic glutamate receptor, Receptor, ligand binding region, Solute-binding protein  family 3/N-terminal domain of MltF; Solute-binding protein  family 3/N-terminal domain of MltF, Ionotropic glutamate receptor, Receptor, ligand binding region
hsd_id_Theobroma_cacao_230	XP_007011660.2; XP_017980363.1; XP_007011665.2; XP_007011661.2	469; 482; 487; 503	Pfam	PF14543, PF14541; PF14541, PF14543; PF14543, PF14541; PF14541, PF14543	Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal	IPR032861, IPR032799; IPR032799, IPR032861; IPR032861, IPR032799; IPR032799, IPR032861	Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal
hsd_id_Theobroma_cacao_231	XP_007011668.1; XP_007036710.2	101; 184	Pfam	PF00173; PF00173	Cytochrome b5-like Heme/Steroid binding domain; Cytochrome b5-like Heme/Steroid binding domain	IPR001199; IPR001199	Cytochrome b5-like heme/steroid binding domain; Cytochrome b5-like heme/steroid binding domain
hsd_id_Theobroma_cacao_232	XP_007011670.1; XP_007011808.2; XP_007013515.2	393; 391; 394	Pfam	PF00892; PF00892; PF00892	EamA-like transporter family; EamA-like transporter family; EamA-like transporter family	IPR000620; IPR000620; IPR000620	EamA domain; EamA domain; EamA domain
hsd_id_Theobroma_cacao_233	XP_007011672.2; XP_017982022.1	531; 472	Pfam	PF04101, PF06925; PF06925, PF04101	Glycosyltransferase family 28 C-terminal domain, Monogalactosyldiacylglycerol (MGDG) synthase; Monogalactosyldiacylglycerol (MGDG) synthase, Glycosyltransferase family 28 C-terminal domain	IPR007235, IPR009695; IPR009695, IPR007235	Glycosyl transferase, family 28, C-terminal, Diacylglycerol glucosyltransferase, N-terminal; Diacylglycerol glucosyltransferase, N-terminal, Glycosyl transferase, family 28, C-terminal
hsd_id_Theobroma_cacao_234	XP_007011678.2; XP_007042813.1	801; 827	Pfam	PF00350, PF02212, PF01031; PF00350, PF01031, PF02212	Dynamin family, Dynamin GTPase effector domain, Dynamin central region; Dynamin family, Dynamin central region, Dynamin GTPase effector domain	IPR045063, IPR003130, IPR000375; IPR045063, IPR000375, IPR003130	Dynamin, N-terminal, Dynamin GTPase effector, Dynamin stalk domain; Dynamin, N-terminal, Dynamin stalk domain, Dynamin GTPase effector
hsd_id_Theobroma_cacao_235	XP_007011685.2; XP_017983214.1	553; 592	Pfam	PF00443, PF02148; PF02148, PF00443	Ubiquitin carboxyl-terminal hydrolase, Zn-finger in ubiquitin-hydrolases and other protein; Zn-finger in ubiquitin-hydrolases and other protein, Ubiquitin carboxyl-terminal hydrolase	IPR001394, IPR001607; IPR001607, IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase, Zinc finger, UBP-type; Zinc finger, UBP-type, Peptidase C19, ubiquitin carboxyl-terminal hydrolase
hsd_id_Theobroma_cacao_236	XP_007011686.2; XP_007011687.2; XP_017979092.1; XP_017982884.1	497; 496; 502; 503	Pfam	PF03092; PF03092; PF03092; PF03092	BT1 family; BT1 family; BT1 family; BT1 family	IPR039309; IPR039309; IPR039309; IPR039309	Biopterin transporter family; Biopterin transporter family; Biopterin transporter family; Biopterin transporter family
hsd_id_Theobroma_cacao_237	XP_007011701.2; XP_017983291.1	797; 800	Pfam	PF02847, PF02854; PF02847, PF02854	MA3 domain, MIF4G domain; MA3 domain, MIF4G domain	IPR003891, IPR003890; IPR003891, IPR003890	Initiation factor eIF-4 gamma, MA3, MIF4G-like, type 3; Initiation factor eIF-4 gamma, MA3, MIF4G-like, type 3
hsd_id_Theobroma_cacao_238	XP_007011709.2; XP_007011925.1; XP_007024480.1	644; 638; 635	Pfam	PF02990; PF02990; PF02990	Endomembrane protein 70; Endomembrane protein 70; Endomembrane protein 70	IPR004240; IPR004240; IPR004240	Nonaspanin (TM9SF); Nonaspanin (TM9SF); Nonaspanin (TM9SF)
hsd_id_Theobroma_cacao_239	XP_007011716.2; XP_007052211.2; XP_007039802.2	405; 402; 398	Pfam	PF16113; PF16113; PF16113	Enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase	IPR045004; IPR045004; IPR045004	Enoyl-CoA hydratase/isomerase domain; Enoyl-CoA hydratase/isomerase domain; Enoyl-CoA hydratase/isomerase domain
hsd_id_Theobroma_cacao_240	XP_007011722.2; XP_007037440.2	1409; 1449	Pfam	PF10409, PF02181; PF02181, PF10409	C2 domain of PTEN tumour-suppressor protein, Formin Homology 2 Domain; Formin Homology 2 Domain, C2 domain of PTEN tumour-suppressor protein	IPR014020, IPR015425; IPR015425, IPR014020	Tensin phosphatase, C2 domain, Formin, FH2 domain; Formin, FH2 domain, Tensin phosphatase, C2 domain
hsd_id_Theobroma_cacao_241	XP_007011737.2; XP_007011962.1	510; 496	Pfam	PF00171; PF00171	Aldehyde dehydrogenase family; Aldehyde dehydrogenase family	IPR015590; IPR015590	Aldehyde dehydrogenase domain; Aldehyde dehydrogenase domain
hsd_id_Theobroma_cacao_242	XP_007011744.2; XP_007032676.2; XP_007037544.1	972; 974; 911	Pfam	PF07724, PF17871, PF02861, PF10431, PF00004; PF00004, PF07724, PF17871, PF10431, PF02861; PF10431, PF02861, PF07724, PF17871, PF00004	AAA domain (Cdc48 subfamily), AAA lid domain, Clp amino terminal domain, pathogenicity island component, C-terminal, D2-small domain, of ClpB protein, ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA), AAA domain (Cdc48 subfamily), AAA lid domain, C-terminal, D2-small domain, of ClpB protein, Clp amino terminal domain, pathogenicity island component; C-terminal, D2-small domain, of ClpB protein, Clp amino terminal domain, pathogenicity island component, AAA domain (Cdc48 subfamily), AAA lid domain, ATPase family associated with various cellular activities (AAA)	IPR003959, IPR041546, IPR004176, IPR019489, IPR003959; IPR003959, IPR003959, IPR041546, IPR019489, IPR004176; IPR019489, IPR004176, IPR003959, IPR041546, IPR003959	ATPase, AAA-type, core, ClpA/ClpB, AAA lid domain, Clp,  repeat (R) domain, Clp ATPase, C-terminal, ATPase, AAA-type, core; ATPase, AAA-type, core, ATPase, AAA-type, core, ClpA/ClpB, AAA lid domain, Clp ATPase, C-terminal, Clp,  repeat (R) domain; Clp ATPase, C-terminal, Clp,  repeat (R) domain, ATPase, AAA-type, core, ClpA/ClpB, AAA lid domain, ATPase, AAA-type, core
hsd_id_Theobroma_cacao_243	XP_007011752.2; XP_007023391.2; XP_017972096.1; XP_007032204.2	268; 278; 251; 257	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_244	XP_007011758.1; XP_007012004.1	51; 51	Pfam	PF00832; PF00832	Ribosomal L39 protein; Ribosomal L39 protein	IPR000077; IPR000077	Ribosomal protein L39e; Ribosomal protein L39e
hsd_id_Theobroma_cacao_245	XP_007011759.2; XP_007012061.2; XP_007013138.2; XP_017982647.1; XP_007048727.1	464; 451; 405; 426; 424	Pfam	PF00155; PF00155; PF00155; PF00155; PF00155	Aminotransferase class I and II; Aminotransferase class I and II; Aminotransferase class I and II; Aminotransferase class I and II; Aminotransferase class I and II	IPR004839; IPR004839; IPR004839; IPR004839; IPR004839	Aminotransferase, class I/classII; Aminotransferase, class I/classII; Aminotransferase, class I/classII; Aminotransferase, class I/classII; Aminotransferase, class I/classII
hsd_id_Theobroma_cacao_246	XP_007011760.2; XP_017977980.1	435; 443	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_247	XP_007011779.2; XP_017985179.1; XP_017982743.1	361; 368; 359	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_248	XP_007011791.2; XP_017984026.1; XP_007052409.2	177; 159; 159	Pfam	PF00366, PF16205; PF16205, PF00366; PF16205, PF00366	Ribosomal protein S17, Ribosomal_S17 N-terminal; Ribosomal_S17 N-terminal, Ribosomal protein S17; Ribosomal_S17 N-terminal, Ribosomal protein S17	IPR000266, IPR032440; IPR032440, IPR000266; IPR032440, IPR000266	Ribosomal protein S17/S11, 40S ribosomal protein S11, N-terminal; 40S ribosomal protein S11, N-terminal, Ribosomal protein S17/S11; 40S ribosomal protein S11, N-terminal, Ribosomal protein S17/S11
hsd_id_Theobroma_cacao_249	XP_007011792.2; XP_017983654.1; XP_007023341.2	557; 551; 540	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_250	XP_007011803.2; XP_007013613.2	549; 615	Pfam	PF03662; PF03662	Glycosyl hydrolase family 79, N-terminal domain; Glycosyl hydrolase family 79, N-terminal domain	IPR005199; IPR005199	Glycoside hydrolase, family 79; Glycoside hydrolase, family 79
hsd_id_Theobroma_cacao_251	XP_007011812.2; XP_007013583.2; XP_007042078.2; XP_007017664.2; XP_007017662.2	482; 483; 470; 465; 467	Pfam	PF16656, PF00149, PF14008; PF00149, PF16656, PF14008; PF00149, PF14008, PF16656; PF00149, PF16656, PF14008; PF16656, PF14008, PF00149	Purple acid Phosphatase, N-terminal domain, Calcineurin-like phosphoesterase, Iron/zinc purple acid phosphatase-like protein C; Calcineurin-like phosphoesterase, Purple acid Phosphatase, N-terminal domain, Iron/zinc purple acid phosphatase-like protein C; Calcineurin-like phosphoesterase, Iron/zinc purple acid phosphatase-like protein C, Purple acid Phosphatase, N-terminal domain; Calcineurin-like phosphoesterase, Purple acid Phosphatase, N-terminal domain, Iron/zinc purple acid phosphatase-like protein C; Purple acid Phosphatase, N-terminal domain, Iron/zinc purple acid phosphatase-like protein C, Calcineurin-like phosphoesterase	IPR015914, IPR004843, IPR025733; IPR004843, IPR015914, IPR025733; IPR004843, IPR025733, IPR015914; IPR004843, IPR015914, IPR025733; IPR015914, IPR025733, IPR004843	Purple acid phosphatase, N-terminal, Calcineurin-like phosphoesterase domain, ApaH type, Iron/zinc purple acid phosphatase-like C-terminal domain; Calcineurin-like phosphoesterase domain, ApaH type, Purple acid phosphatase, N-terminal, Iron/zinc purple acid phosphatase-like C-terminal domain; Calcineurin-like phosphoesterase domain, ApaH type, Iron/zinc purple acid phosphatase-like C-terminal domain, Purple acid phosphatase, N-terminal; Calcineurin-like phosphoesterase domain, ApaH type, Purple acid phosphatase, N-terminal, Iron/zinc purple acid phosphatase-like C-terminal domain; Purple acid phosphatase, N-terminal, Iron/zinc purple acid phosphatase-like C-terminal domain, Calcineurin-like phosphoesterase domain, ApaH type
hsd_id_Theobroma_cacao_252	XP_007011814.1; XP_017982857.1	567; 566	Pfam	PF17047, PF00168; PF17047, PF00168	Synaptotagmin-like mitochondrial-lipid-binding domain, C2 domain; Synaptotagmin-like mitochondrial-lipid-binding domain, C2 domain	IPR039010, IPR000008; IPR039010, IPR000008	Synaptotagmin, SMP domain, C2 domain; Synaptotagmin, SMP domain, C2 domain
hsd_id_Theobroma_cacao_253	XP_007011815.1; XP_017983407.1; XP_017974718.1; XP_007019750.2	1050; 1055; 1063; 1024	Pfam	PF00534, PF05116, PF00862; PF00862, PF00534, PF05116; PF00534, PF05116, PF00862; PF00862, PF00534, PF05116	Glycosyl transferases group 1, Sucrose-6F-phosphate phosphohydrolase, Sucrose synthase; Sucrose synthase, Glycosyl transferases group 1, Sucrose-6F-phosphate phosphohydrolase; Glycosyl transferases group 1, Sucrose-6F-phosphate phosphohydrolase, Sucrose synthase; Sucrose synthase, Glycosyl transferases group 1, Sucrose-6F-phosphate phosphohydrolase	IPR001296, IPR006380, IPR000368; IPR000368, IPR001296, IPR006380; IPR001296, IPR006380, IPR000368; IPR000368, IPR001296, IPR006380	Glycosyl transferase, family 1, Sucrose-phosphatase-like, N-terminal, Sucrose synthase; Sucrose synthase, Glycosyl transferase, family 1, Sucrose-phosphatase-like, N-terminal; Glycosyl transferase, family 1, Sucrose-phosphatase-like, N-terminal, Sucrose synthase; Sucrose synthase, Glycosyl transferase, family 1, Sucrose-phosphatase-like, N-terminal
hsd_id_Theobroma_cacao_254	XP_007011816.2; XP_017982281.1; XP_007013570.2; XP_007013568.1; XP_007011817.2; XP_007027562.2; XP_007049437.2; XP_017977888.1	466; 471; 470; 484; 479; 569; 481; 546	Pfam	PF03016; PF03016; PF03016; PF03016; PF03016; PF03016; PF03016; PF03016	Exostosin family; Exostosin family; Exostosin family; Exostosin family; Exostosin family; Exostosin family; Exostosin family; Exostosin family	IPR040911; IPR040911; IPR040911; IPR040911; IPR040911; IPR040911; IPR040911; IPR040911	Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain
hsd_id_Theobroma_cacao_255	XP_007011828.2; XP_017978973.1	714; 772	Pfam	PF00787; PF00787	PX domain; PX domain	IPR001683; IPR001683	Phox homology; Phox homology
hsd_id_Theobroma_cacao_256	XP_007011830.1; XP_007039902.1; XP_007018523.2; XP_017978240.1	191; 182; 256; 156	Pfam	PF00156; PF00156; PF00156; PF00156	Phosphoribosyl transferase domain; Phosphoribosyl transferase domain; Phosphoribosyl transferase domain; Phosphoribosyl transferase domain	IPR000836; IPR000836; IPR000836; IPR000836	Phosphoribosyltransferase domain; Phosphoribosyltransferase domain; Phosphoribosyltransferase domain; Phosphoribosyltransferase domain
hsd_id_Theobroma_cacao_257	XP_007011838.2; XP_017982072.1	354; 339	Pfam	PF03151; PF03151	Triose-phosphate Transporter family; Triose-phosphate Transporter family	IPR004853; IPR004853	Sugar phosphate transporter domain; Sugar phosphate transporter domain
hsd_id_Theobroma_cacao_258	XP_007011873.2; XP_017983874.1	293; 298	Pfam	PF03105; PF03105	SPX domain; SPX domain	IPR004331; IPR004331	SPX domain; SPX domain
hsd_id_Theobroma_cacao_259	XP_007011875.1; XP_007013443.2	133; 131	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_260	XP_007011879.1; XP_007023163.1	428; 427	Pfam	PF00271, PF00270; PF00270, PF00271	Helicase conserved C-terminal domain, DEAD/DEAH box helicase; DEAD/DEAH box helicase, Helicase conserved C-terminal domain	IPR001650, IPR011545; IPR011545, IPR001650	Helicase, C-terminal, DEAD/DEAH box helicase domain; DEAD/DEAH box helicase domain, Helicase, C-terminal
hsd_id_Theobroma_cacao_261	XP_007011890.2; XP_007013846.2; XP_017979080.1	131; 126; 131	Pfam	PF03330; PF03330; PF03330	Lytic transglycolase; Lytic transglycolase; Lytic transglycolase	IPR009009; IPR009009; IPR009009	RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain
hsd_id_Theobroma_cacao_262	XP_007011899.1; XP_017977870.1	76; 58	Pfam	PF01679; PF01679	Proteolipid membrane potential modulator; Proteolipid membrane potential modulator	IPR000612; IPR000612	Proteolipid membrane potential modulator; Proteolipid membrane potential modulator
hsd_id_Theobroma_cacao_263	XP_007011906.2; XP_007033919.1; XP_017974330.1	272; 269; 269	Pfam	PF03878; PF03878; PF03878	YIF1; YIF1; YIF1	IPR005578; IPR005578; IPR005578	Yif1 family; Yif1 family; Yif1 family
hsd_id_Theobroma_cacao_264	XP_007011917.2; XP_017982677.1	739; 732	Pfam	PF00027, PF00520; PF00520, PF00027	Cyclic nucleotide-binding domain, Ion transport protein; Ion transport protein, Cyclic nucleotide-binding domain	IPR000595, IPR005821; IPR005821, IPR000595	Cyclic nucleotide-binding domain, Ion transport domain; Ion transport domain, Cyclic nucleotide-binding domain
hsd_id_Theobroma_cacao_265	XP_007011939.2; XP_007023432.1; XP_007017467.2; XP_007045734.1; XP_007022761.2; XP_007040982.2	379; 376; 332; 323; 409; 398	Pfam	PF03352; PF03352; PF03352; PF03352; PF03352; PF03352	Methyladenine glycosylase; Methyladenine glycosylase; Methyladenine glycosylase; Methyladenine glycosylase; Methyladenine glycosylase; Methyladenine glycosylase	IPR005019; IPR005019; IPR005019; IPR005019; IPR005019; IPR005019	Methyladenine glycosylase; Methyladenine glycosylase; Methyladenine glycosylase; Methyladenine glycosylase; Methyladenine glycosylase; Methyladenine glycosylase
hsd_id_Theobroma_cacao_266	XP_007011940.2; XP_007045981.2; XP_017975383.1; XP_017972970.1; XP_007020620.2; XP_017969824.1; XP_017974754.1; XP_017970253.1; XP_017971692.1; XP_007022995.2; XP_017977336.1; XP_007026134.2; XP_007037253.2; XP_007020766.2; XP_007049283.2; XP_017977471.1; XP_017983501.1; XP_017969767.1	505; 529; 520; 493; 566; 511; 570; 524; 526; 448; 474; 593; 612; 580; 503; 612; 605; 631	Pfam	PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106	WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain	IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657	WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain
hsd_id_Theobroma_cacao_267	XP_007011943.1; XP_007045977.2; XP_007037448.1	160; 159; 159	Pfam	PF01287; PF01287; PF01287	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold	IPR020189; IPR020189; IPR020189	Translation elongation factor, IF5A C-terminal; Translation elongation factor, IF5A C-terminal; Translation elongation factor, IF5A C-terminal
hsd_id_Theobroma_cacao_268	XP_007011977.2; XP_017976014.1; XP_007047632.2	498; 508; 575	Pfam	PF05577; PF05577; PF05577	Serine carboxypeptidase S28; Serine carboxypeptidase S28; Serine carboxypeptidase S28	IPR008758; IPR008758; IPR008758	Peptidase S28; Peptidase S28; Peptidase S28
hsd_id_Theobroma_cacao_269	XP_007011984.2; XP_017975728.1; XP_007040717.2; XP_007045728.2; XP_017974880.1; XP_007037808.2; XP_007031667.2	299; 377; 388; 381; 342; 398; 406	Pfam	PF12146; PF12146; PF12146; PF12146; PF12146; PF12146; PF12146	Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33	IPR022742; IPR022742; IPR022742; IPR022742; IPR022742; IPR022742; IPR022742	Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33
hsd_id_Theobroma_cacao_270	XP_007011999.2; XP_017982200.1; XP_017982255.1	379; 426; 421	Pfam	PF00704; PF00704; PF00704	Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18	IPR001223; IPR001223; IPR001223	Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain
hsd_id_Theobroma_cacao_271	XP_007012001.2; XP_007023387.1	230; 232	Pfam	PF03556; PF03556	Cullin binding; Cullin binding	IPR005176; IPR005176	Potentiating neddylation domain; Potentiating neddylation domain
hsd_id_Theobroma_cacao_272	XP_007012038.2; XP_007013183.2; XP_007013782.2; XP_007034552.2; XP_007050091.2	419; 431; 413; 430; 424	Pfam	PF00743; PF00743; PF00743; PF00743; PF00743	Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like	IPR020946; IPR020946; IPR020946; IPR020946; IPR020946	Flavin monooxygenase-like; Flavin monooxygenase-like; Flavin monooxygenase-like; Flavin monooxygenase-like; Flavin monooxygenase-like
hsd_id_Theobroma_cacao_273	XP_007012040.1; XP_017979135.1	95; 95	Pfam	PF01907; PF01907	Ribosomal protein L37e; Ribosomal protein L37e	IPR001569; IPR001569	Ribosomal protein L37e; Ribosomal protein L37e
hsd_id_Theobroma_cacao_274	XP_007012043.1; XP_007047584.2	311; 304	Pfam	PF01926; PF01926	50S ribosome-binding GTPase; 50S ribosome-binding GTPase	IPR006073; IPR006073	GTP binding domain; GTP binding domain
hsd_id_Theobroma_cacao_275	XP_007012059.2; XP_017983236.1; XP_007024182.1; XP_007021253.2; XP_007025807.1; XP_007026886.1	97; 93; 97; 109; 109; 113	Pfam	PF01221; PF01221; PF01221; PF01221; PF01221; PF01221	Dynein light chain type 1; Dynein light chain type 1; Dynein light chain type 1; Dynein light chain type 1; Dynein light chain type 1; Dynein light chain type 1	IPR001372; IPR001372; IPR001372; IPR001372; IPR001372; IPR001372	Dynein light chain, type 1/2; Dynein light chain, type 1/2; Dynein light chain, type 1/2; Dynein light chain, type 1/2; Dynein light chain, type 1/2; Dynein light chain, type 1/2
hsd_id_Theobroma_cacao_276	XP_007012070.2; XP_007021574.2	388; 352	Pfam	PF01063; PF01063	Amino-transferase class IV; Amino-transferase class IV	IPR001544; IPR001544	Aminotransferase class IV; Aminotransferase class IV
hsd_id_Theobroma_cacao_277	XP_007012074.1; XP_007013130.1	100; 91	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_278	XP_007012090.2; XP_007051445.2	584; 586	Pfam	PF01565, PF04030; PF04030, PF01565	FAD binding domain, D-arabinono-1,4-lactone oxidase; D-arabinono-1,4-lactone oxidase, FAD binding domain	IPR006094, IPR007173; IPR007173, IPR006094	FAD linked oxidase, N-terminal, D-arabinono-1,4-lactone oxidase; D-arabinono-1,4-lactone oxidase, FAD linked oxidase, N-terminal
hsd_id_Theobroma_cacao_279	XP_007012101.2; XP_007013111.2	347; 347	Pfam	PF01048; PF01048	Phosphorylase superfamily; Phosphorylase superfamily	IPR000845; IPR000845	Nucleoside phosphorylase domain; Nucleoside phosphorylase domain
hsd_id_Theobroma_cacao_280	XP_007012104.2; XP_007024218.2; XP_017981444.1; XP_017978305.1	585; 605; 603; 568	Pfam	PF00854; PF00854; PF00854; PF00854	POT family; POT family; POT family; POT family	IPR000109; IPR000109; IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_281	XP_007012108.1; XP_017983488.1; XP_007026103.2; XP_017980748.1	366; 364; 292; 300	Pfam	PF00903; PF00903; PF00903; PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	IPR004360; IPR004360; IPR004360; IPR004360	Glyoxalase/fosfomycin resistance/dioxygenase domain; Glyoxalase/fosfomycin resistance/dioxygenase domain; Glyoxalase/fosfomycin resistance/dioxygenase domain; Glyoxalase/fosfomycin resistance/dioxygenase domain
hsd_id_Theobroma_cacao_282	XP_007012117.2; XP_017982145.1	606; 638	Pfam	PF03055; PF03055	Retinal pigment epithelial membrane protein; Retinal pigment epithelial membrane protein	IPR004294; IPR004294	Carotenoid oxygenase; Carotenoid oxygenase
hsd_id_Theobroma_cacao_283	XP_007012147.2; XP_017972140.1	93; 107	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_284	XP_007012157.2; XP_007024281.2	184; 201	Pfam	PF07911; PF07911	Protein of unknown function (DUF1677); Protein of unknown function (DUF1677)	IPR012876; IPR012876	Protein of unknown function DUF1677, plant; Protein of unknown function DUF1677, plant
hsd_id_Theobroma_cacao_285	XP_007012161.2; XP_007012163.2	156; 156	Pfam	PF10604; PF10604	Polyketide cyclase / dehydrase and lipid transport; Polyketide cyclase / dehydrase and lipid transport	IPR019587; IPR019587	Polyketide cyclase/dehydrase; Polyketide cyclase/dehydrase
hsd_id_Theobroma_cacao_286	XP_007012166.2; XP_007024289.2	261; 246	Pfam	PF16719; PF16719	SAWADEE domain; SAWADEE domain	IPR032001; IPR032001	SAWADEE domain; SAWADEE domain
hsd_id_Theobroma_cacao_287	XP_007012178.2; XP_007013031.2	238; 214	Pfam	PF02466; PF02466	Tim17/Tim22/Tim23/Pmp24 family; Tim17/Tim22/Tim23/Pmp24 family	-; -	-; -
hsd_id_Theobroma_cacao_288	XP_007012182.2; XP_017973478.1; XP_007024323.2; XP_017975040.1	817; 762; 698; 661	Pfam	PF04928, PF04926, PF01909; PF04926, PF01909, PF04928; PF04928, PF01909, PF04926; PF04926, PF01909, PF04928	Poly(A) polymerase central domain, Poly(A) polymerase predicted RNA binding domain, Nucleotidyltransferase domain; Poly(A) polymerase predicted RNA binding domain, Nucleotidyltransferase domain, Poly(A) polymerase central domain; Poly(A) polymerase central domain, Nucleotidyltransferase domain, Poly(A) polymerase predicted RNA binding domain; Poly(A) polymerase predicted RNA binding domain, Nucleotidyltransferase domain, Poly(A) polymerase central domain	IPR007012, IPR007010, IPR002934; IPR007010, IPR002934, IPR007012; IPR007012, IPR002934, IPR007010; IPR007010, IPR002934, IPR007012	Poly(A) polymerase, central domain, Poly(A) polymerase, RNA-binding domain, Polymerase, nucleotidyl transferase domain; Poly(A) polymerase, RNA-binding domain, Polymerase, nucleotidyl transferase domain, Poly(A) polymerase, central domain; Poly(A) polymerase, central domain, Polymerase, nucleotidyl transferase domain, Poly(A) polymerase, RNA-binding domain; Poly(A) polymerase, RNA-binding domain, Polymerase, nucleotidyl transferase domain, Poly(A) polymerase, central domain
hsd_id_Theobroma_cacao_289	XP_007012197.2; XP_007012985.1; XP_007024334.1; XP_017983788.1	133; 133; 132; 134	Pfam	PF00235; PF00235; PF00235; PF00235	Profilin; Profilin; Profilin; Profilin	IPR005455; IPR005455; IPR005455; IPR005455	Profilin; Profilin; Profilin; Profilin
hsd_id_Theobroma_cacao_290	XP_007012199.2; XP_007012967.2; XP_017979391.1; XP_017973393.1; XP_017978943.1; XP_007047816.2	490; 583; 526; 530; 487; 537	Pfam	PF00365; PF00365; PF00365; PF00365; PF00365; PF00365	Phosphofructokinase; Phosphofructokinase; Phosphofructokinase; Phosphofructokinase; Phosphofructokinase; Phosphofructokinase	IPR000023; IPR000023; IPR000023; IPR000023; IPR000023; IPR000023	Phosphofructokinase domain; Phosphofructokinase domain; Phosphofructokinase domain; Phosphofructokinase domain; Phosphofructokinase domain; Phosphofructokinase domain
hsd_id_Theobroma_cacao_291	XP_007012202.2; XP_007052016.1	294; 284	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_292	XP_007012203.1; XP_007038271.2	147; 138	Pfam	PF01277; PF01277	Oleosin; Oleosin	IPR000136; IPR000136	Oleosin; Oleosin
hsd_id_Theobroma_cacao_293	XP_007012217.2; XP_007012962.2; XP_007039616.2	1452; 1434; 1467	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_294	XP_007012231.2; XP_007024391.2; XP_017972094.1; XP_007033224.2; XP_007022850.1; XP_017973867.1; XP_007044267.2; XP_007036567.2	392; 386; 399; 421; 390; 410; 404; 503	Pfam	PF02485; PF02485; PF02485; PF02485; PF02485; PF02485; PF02485; PF02485	Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme	IPR003406; IPR003406; IPR003406; IPR003406; IPR003406; IPR003406; IPR003406; IPR003406	Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14
hsd_id_Theobroma_cacao_295	XP_007012233.1; XP_007014063.2; XP_007030097.1	284; 221; 211	Pfam	PF07797; PF07797; PF07797	Protein of unknown function (DUF1639); Protein of unknown function (DUF1639); Protein of unknown function (DUF1639)	IPR012438; IPR012438; IPR012438	Protein of unknown function DUF1639; Protein of unknown function DUF1639; Protein of unknown function DUF1639
hsd_id_Theobroma_cacao_296	XP_007012236.2; XP_017972845.1; XP_017978597.1	487; 489; 483	Pfam	PF01650; PF01650; PF01650	Peptidase C13 family; Peptidase C13 family; Peptidase C13 family	IPR001096; IPR001096; IPR001096	Peptidase C13, legumain; Peptidase C13, legumain; Peptidase C13, legumain
hsd_id_Theobroma_cacao_297	XP_007012241.2; XP_007047709.1; XP_017981774.1; XP_007034218.2; XP_007018908.2; XP_017971513.1	523; 517; 514; 471; 575; 593	Pfam	PF00464; PF00464; PF00464; PF00464; PF00464; PF00464	Serine hydroxymethyltransferase; Serine hydroxymethyltransferase; Serine hydroxymethyltransferase; Serine hydroxymethyltransferase; Serine hydroxymethyltransferase; Serine hydroxymethyltransferase	IPR039429; IPR039429; IPR039429; IPR039429; IPR039429; IPR039429	Serine hydroxymethyltransferase-like domain; Serine hydroxymethyltransferase-like domain; Serine hydroxymethyltransferase-like domain; Serine hydroxymethyltransferase-like domain; Serine hydroxymethyltransferase-like domain; Serine hydroxymethyltransferase-like domain
hsd_id_Theobroma_cacao_298	XP_007012246.2; XP_017969334.1	493; 517	Pfam	PF00762; PF00762	Ferrochelatase; Ferrochelatase	IPR001015; IPR001015	Ferrochelatase; Ferrochelatase
hsd_id_Theobroma_cacao_299	XP_007012253.2; XP_007024442.1; XP_017973672.1	511; 515; 513	Pfam	PF00400; PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680; IPR001680	WD40 repeat; WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_300	XP_007012258.2; XP_007012892.2; XP_007030622.2	346; 347; 351	Pfam	PF03096; PF03096; PF03096	Ndr family; Ndr family; Ndr family	IPR004142; IPR004142; IPR004142	NDRG; NDRG; NDRG
hsd_id_Theobroma_cacao_301	XP_007012264.1; XP_007012870.2; XP_017972596.1	599; 577; 581	Pfam	PF00999; PF00999; PF00999	Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family	IPR006153; IPR006153; IPR006153	Cation/H+ exchanger; Cation/H+ exchanger; Cation/H+ exchanger
hsd_id_Theobroma_cacao_302	XP_007012268.2; XP_017980972.1	321; 234	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_303	XP_007012272.2; XP_007046791.2	243; 233	Pfam	PF05608; PF05608	Protein of unknown function (DUF778); Protein of unknown function (DUF778)	IPR008496; IPR008496	TMEM222/RTE1; TMEM222/RTE1
hsd_id_Theobroma_cacao_304	XP_007012284.2; XP_007022739.2; XP_017975723.1; XP_017970769.1; XP_017971917.1; XP_017971820.1; XP_017970667.1; XP_017978451.1	437; 363; 367; 357; 355; 355; 352; 356	Pfam	PF02535; PF02535; PF02535; PF02535; PF02535; PF02535; PF02535; PF02535	ZIP Zinc transporter; ZIP Zinc transporter; ZIP Zinc transporter; ZIP Zinc transporter; ZIP Zinc transporter; ZIP Zinc transporter; ZIP Zinc transporter; ZIP Zinc transporter	IPR003689; IPR003689; IPR003689; IPR003689; IPR003689; IPR003689; IPR003689; IPR003689	Zinc/iron permease; Zinc/iron permease; Zinc/iron permease; Zinc/iron permease; Zinc/iron permease; Zinc/iron permease; Zinc/iron permease; Zinc/iron permease
hsd_id_Theobroma_cacao_305	XP_007012290.2; XP_007024503.2; XP_007026014.2	241; 238; 288	Pfam	PF03195; PF03195; PF03195	Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain	IPR004883; IPR004883; IPR004883	Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB
hsd_id_Theobroma_cacao_306	XP_007012291.1; XP_017969498.1	447; 447	Pfam	PF00487, PF00173; PF00487, PF00173	Fatty acid desaturase, Cytochrome b5-like Heme/Steroid binding domain; Fatty acid desaturase, Cytochrome b5-like Heme/Steroid binding domain	IPR005804, IPR001199; IPR005804, IPR001199	Fatty acid desaturase domain, Cytochrome b5-like heme/steroid binding domain; Fatty acid desaturase domain, Cytochrome b5-like heme/steroid binding domain
hsd_id_Theobroma_cacao_307	XP_007012292.2; XP_007012820.1	198; 191	Pfam	PF01253; PF01253	Translation initiation factor SUI1; Translation initiation factor SUI1	IPR001950; IPR001950	SUI1 domain; SUI1 domain
hsd_id_Theobroma_cacao_308	XP_007012294.2; XP_017982854.1; XP_007012811.1	278; 270; 309	Pfam	PF12146; PF12146; PF12146	Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33	IPR022742; IPR022742; IPR022742	Serine aminopeptidase, S33; Serine aminopeptidase, S33; Serine aminopeptidase, S33
hsd_id_Theobroma_cacao_309	XP_007012302.2; XP_017977921.1; XP_017983748.1; XP_007024490.2; XP_017976223.1; XP_007027808.2	582; 555; 584; 579; 575; 508	Pfam	PF00251, PF08244; PF08244, PF00251; PF00251, PF08244; PF08244, PF00251; PF08244, PF00251; PF00251, PF08244	Glycosyl hydrolases family 32 N-terminal domain, Glycosyl hydrolases family 32 C terminal; Glycosyl hydrolases family 32 C terminal, Glycosyl hydrolases family 32 N-terminal domain; Glycosyl hydrolases family 32 N-terminal domain, Glycosyl hydrolases family 32 C terminal; Glycosyl hydrolases family 32 C terminal, Glycosyl hydrolases family 32 N-terminal domain; Glycosyl hydrolases family 32 C terminal, Glycosyl hydrolases family 32 N-terminal domain; Glycosyl hydrolases family 32 N-terminal domain, Glycosyl hydrolases family 32 C terminal	IPR013148, IPR013189; IPR013189, IPR013148; IPR013148, IPR013189; IPR013189, IPR013148; IPR013189, IPR013148; IPR013148, IPR013189	Glycosyl hydrolase family 32, N-terminal, Glycosyl hydrolase family 32, C-terminal; Glycosyl hydrolase family 32, C-terminal, Glycosyl hydrolase family 32, N-terminal; Glycosyl hydrolase family 32, N-terminal, Glycosyl hydrolase family 32, C-terminal; Glycosyl hydrolase family 32, C-terminal, Glycosyl hydrolase family 32, N-terminal; Glycosyl hydrolase family 32, C-terminal, Glycosyl hydrolase family 32, N-terminal; Glycosyl hydrolase family 32, N-terminal, Glycosyl hydrolase family 32, C-terminal
hsd_id_Theobroma_cacao_310	XP_007012309.2; XP_007050487.2; XP_017973125.1; XP_007017200.2; XP_007038632.2; XP_007034864.2; XP_017969852.1; XP_007025290.1; XP_007013185.2; XP_017971105.1; XP_007048764.2; XP_017982155.1; XP_007015249.2; XP_007028662.2; XP_007029602.1; XP_017975850.1; XP_007027618.2; XP_007040660.2	399; 362; 314; 361; 322; 360; 295; 405; 340; 400; 447; 450; 279; 233; 500; 490; 476; 528	Pfam	PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447; PF00447	HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding; HSF-type DNA-binding	IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232; IPR000232	Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding; Heat shock factor (HSF)-type, DNA-binding
hsd_id_Theobroma_cacao_311	XP_007012313.1; XP_017981930.1; XP_017977990.1; XP_017977889.1; XP_007027673.2; XP_007014678.2	539; 540; 542; 629; 538; 657	Pfam	; ; ; ; ; 	; ; ; ; ; 	; ; ; ; ; 	; ; ; ; ; 
hsd_id_Theobroma_cacao_312	XP_007012315.2; XP_017978319.1; XP_007012890.2	345; 328; 336	Pfam	PF00153; PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_313	XP_007012323.1; XP_007024535.1; XP_007012324.1; XP_007043317.2	412; 413; 413; 406	Pfam	PF00270, PF00271; PF00271, PF00270; PF00271, PF00270; PF00271, PF00270	DEAD/DEAH box helicase, Helicase conserved C-terminal domain; Helicase conserved C-terminal domain, DEAD/DEAH box helicase; Helicase conserved C-terminal domain, DEAD/DEAH box helicase; Helicase conserved C-terminal domain, DEAD/DEAH box helicase	IPR011545, IPR001650; IPR001650, IPR011545; IPR001650, IPR011545; IPR001650, IPR011545	DEAD/DEAH box helicase domain, Helicase, C-terminal; Helicase, C-terminal, DEAD/DEAH box helicase domain; Helicase, C-terminal, DEAD/DEAH box helicase domain; Helicase, C-terminal, DEAD/DEAH box helicase domain
hsd_id_Theobroma_cacao_314	XP_007012352.2; XP_017979136.1; XP_017982816.1	558; 543; 545	Pfam	PF00481; PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_315	XP_007012359.2; XP_017982636.1; XP_017978983.1	875; 906; 885	Pfam	PF01433, PF17900, PF11838; PF11838, PF01433, PF17900; PF11838, PF17900, PF01433	Peptidase family M1 domain, Peptidase M1 N-terminal domain, ERAP1-like C-terminal domain; ERAP1-like C-terminal domain, Peptidase family M1 domain, Peptidase M1 N-terminal domain; ERAP1-like C-terminal domain, Peptidase M1 N-terminal domain, Peptidase family M1 domain	IPR014782, -, IPR024571; IPR024571, IPR014782, -; IPR024571, -, IPR014782	Peptidase M1, membrane alanine aminopeptidase, -, ERAP1-like C-terminal domain; ERAP1-like C-terminal domain, Peptidase M1, membrane alanine aminopeptidase, -; ERAP1-like C-terminal domain, -, Peptidase M1, membrane alanine aminopeptidase
hsd_id_Theobroma_cacao_316	XP_007012369.1; XP_007048143.2; XP_007038026.1; XP_007031915.1; XP_007043929.1; XP_017976255.1; XP_007048165.1; XP_007019683.1	159; 188; 163; 177; 185; 201; 226; 231	Pfam	PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106; PF03106	WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain	IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657; IPR003657	WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain; WRKY domain
hsd_id_Theobroma_cacao_317	XP_007012396.1; XP_017983009.1	122; 121	Pfam	PF06596; PF06596	Photosystem II reaction centre X protein (PsbX); Photosystem II reaction centre X protein (PsbX)	IPR009518; IPR009518	Photosystem II PsbX; Photosystem II PsbX
hsd_id_Theobroma_cacao_318	XP_007012397.2; XP_007034727.2	338; 334	Pfam	PF17284, PF01564; PF17284, PF01564	Spermidine synthase tetramerisation domain, Spermine/spermidine synthase domain; Spermidine synthase tetramerisation domain, Spermine/spermidine synthase domain	IPR035246, -; IPR035246, -	Spermidine synthase, tetramerisation domain, -; Spermidine synthase, tetramerisation domain, -
hsd_id_Theobroma_cacao_319	XP_007012400.2; XP_007012688.1	239; 235	Pfam	PF00189, PF07650; PF00189, PF07650	Ribosomal protein S3, C-terminal domain, KH domain; Ribosomal protein S3, C-terminal domain, KH domain	IPR001351, IPR004044; IPR001351, IPR004044	Ribosomal protein S3, C-terminal, K Homology domain, type 2; Ribosomal protein S3, C-terminal, K Homology domain, type 2
hsd_id_Theobroma_cacao_320	XP_007012415.1; XP_017979498.1; XP_017974629.1; XP_007031495.1; XP_007044644.2	202; 199; 208; 194; 210	Pfam	PF00249; PF00249; PF00249; PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930; IPR017930; IPR017930; IPR017930	Myb domain; Myb domain; Myb domain; Myb domain; Myb domain
hsd_id_Theobroma_cacao_321	XP_007012427.2; XP_007049612.2	269; 226	Pfam	PF02325; PF02325	YGGT family; YGGT family	IPR003425; IPR003425	CCB3/YggT; CCB3/YggT
hsd_id_Theobroma_cacao_322	XP_007012434.2; XP_017977285.1; XP_007024563.2; XP_007012724.1; XP_017982495.1; XP_017975244.1	1525; 1527; 1524; 1530; 1514; 1503	Pfam	PF00612, PF00063, PF02736, PF01843; PF01843, PF00612, PF00063, PF02736; PF00063, PF01843, PF00612, PF02736; PF00063, PF02736, PF00612, PF01843; PF01843, PF00063, PF00612, PF02736; PF00612, PF02736, PF01843, PF00063	IQ calmodulin-binding motif, Myosin head (motor domain), Myosin N-terminal SH3-like domain, DIL domain; DIL domain, IQ calmodulin-binding motif, Myosin head (motor domain), Myosin N-terminal SH3-like domain; Myosin head (motor domain), DIL domain, IQ calmodulin-binding motif, Myosin N-terminal SH3-like domain; Myosin head (motor domain), Myosin N-terminal SH3-like domain, IQ calmodulin-binding motif, DIL domain; DIL domain, Myosin head (motor domain), IQ calmodulin-binding motif, Myosin N-terminal SH3-like domain; IQ calmodulin-binding motif, Myosin N-terminal SH3-like domain, DIL domain, Myosin head (motor domain)	IPR000048, IPR001609, IPR004009, IPR002710; IPR002710, IPR000048, IPR001609, IPR004009; IPR001609, IPR002710, IPR000048, IPR004009; IPR001609, IPR004009, IPR000048, IPR002710; IPR002710, IPR001609, IPR000048, IPR004009; IPR000048, IPR004009, IPR002710, IPR001609	IQ motif, EF-hand binding site, Myosin head, motor domain, Myosin, N-terminal, SH3-like, Dilute domain; Dilute domain, IQ motif, EF-hand binding site, Myosin head, motor domain, Myosin, N-terminal, SH3-like; Myosin head, motor domain, Dilute domain, IQ motif, EF-hand binding site, Myosin, N-terminal, SH3-like; Myosin head, motor domain, Myosin, N-terminal, SH3-like, IQ motif, EF-hand binding site, Dilute domain; Dilute domain, Myosin head, motor domain, IQ motif, EF-hand binding site, Myosin, N-terminal, SH3-like; IQ motif, EF-hand binding site, Myosin, N-terminal, SH3-like, Dilute domain, Myosin head, motor domain
hsd_id_Theobroma_cacao_323	XP_007012456.1; XP_017978048.1; XP_007012618.1	147; 160; 148	Pfam	PF07911; PF07911; PF07911	Protein of unknown function (DUF1677); Protein of unknown function (DUF1677); Protein of unknown function (DUF1677)	IPR012876; IPR012876; IPR012876	Protein of unknown function DUF1677, plant; Protein of unknown function DUF1677, plant; Protein of unknown function DUF1677, plant
hsd_id_Theobroma_cacao_324	XP_007012479.1; XP_007035461.2; XP_007030153.1	152; 136; 137	Pfam	PF00550; PF00550; PF00550	Phosphopantetheine attachment site; Phosphopantetheine attachment site; Phosphopantetheine attachment site	IPR009081; IPR009081; IPR009081	Phosphopantetheine binding ACP domain; Phosphopantetheine binding ACP domain; Phosphopantetheine binding ACP domain
hsd_id_Theobroma_cacao_325	XP_007012497.2; XP_017985234.1; XP_017983377.1; XP_007030700.2; XP_007048775.2; XP_007013263.2; XP_007048158.2; XP_007016969.2	490; 484; 509; 479; 502; 530; 478; 494	Pfam	PF00332, PF07983; PF07983, PF00332; PF00332, PF07983; PF07983, PF00332; PF00332, PF07983; PF00332, PF07983; PF07983, PF00332; PF00332, PF07983	Glycosyl hydrolases family 17, X8 domain; X8 domain, Glycosyl hydrolases family 17; Glycosyl hydrolases family 17, X8 domain; X8 domain, Glycosyl hydrolases family 17; Glycosyl hydrolases family 17, X8 domain; Glycosyl hydrolases family 17, X8 domain; X8 domain, Glycosyl hydrolases family 17; Glycosyl hydrolases family 17, X8 domain	IPR000490, IPR012946; IPR012946, IPR000490; IPR000490, IPR012946; IPR012946, IPR000490; IPR000490, IPR012946; IPR000490, IPR012946; IPR012946, IPR000490; IPR000490, IPR012946	Glycoside hydrolase family 17, X8 domain; X8 domain, Glycoside hydrolase family 17; Glycoside hydrolase family 17, X8 domain; X8 domain, Glycoside hydrolase family 17; Glycoside hydrolase family 17, X8 domain; Glycoside hydrolase family 17, X8 domain; X8 domain, Glycoside hydrolase family 17; Glycoside hydrolase family 17, X8 domain
hsd_id_Theobroma_cacao_326	XP_007012504.2; XP_017974122.1; XP_017983421.1; XP_017979081.1; XP_007052106.2; XP_007038413.2; XP_007031046.2; XP_007025998.2; XP_007038414.2; XP_007045218.2; XP_017973918.1; XP_017982501.1; XP_007050982.2	541; 560; 573; 582; 517; 516; 560; 543; 524; 520; 485; 535; 562	Pfam	PF04043, PF01095; PF01095, PF04043; PF04043, PF01095; PF04043, PF01095; PF04043, PF01095; PF01095, PF04043; PF04043, PF01095; PF01095, PF04043; PF04043, PF01095; PF04043, PF01095; PF01095, PF04043; PF01095, PF04043; PF01095, PF04043	Plant invertase/pectin methylesterase inhibitor, Pectinesterase; Pectinesterase, Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor, Pectinesterase; Plant invertase/pectin methylesterase inhibitor, Pectinesterase; Plant invertase/pectin methylesterase inhibitor, Pectinesterase; Pectinesterase, Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor, Pectinesterase; Pectinesterase, Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor, Pectinesterase; Plant invertase/pectin methylesterase inhibitor, Pectinesterase; Pectinesterase, Plant invertase/pectin methylesterase inhibitor; Pectinesterase, Plant invertase/pectin methylesterase inhibitor; Pectinesterase, Plant invertase/pectin methylesterase inhibitor	IPR006501, IPR000070; IPR000070, IPR006501; IPR006501, IPR000070; IPR006501, IPR000070; IPR006501, IPR000070; IPR000070, IPR006501; IPR006501, IPR000070; IPR000070, IPR006501; IPR006501, IPR000070; IPR006501, IPR000070; IPR000070, IPR006501; IPR000070, IPR006501; IPR000070, IPR006501	Pectinesterase inhibitor domain, Pectinesterase, catalytic; Pectinesterase, catalytic, Pectinesterase inhibitor domain; Pectinesterase inhibitor domain, Pectinesterase, catalytic; Pectinesterase inhibitor domain, Pectinesterase, catalytic; Pectinesterase inhibitor domain, Pectinesterase, catalytic; Pectinesterase, catalytic, Pectinesterase inhibitor domain; Pectinesterase inhibitor domain, Pectinesterase, catalytic; Pectinesterase, catalytic, Pectinesterase inhibitor domain; Pectinesterase inhibitor domain, Pectinesterase, catalytic; Pectinesterase inhibitor domain, Pectinesterase, catalytic; Pectinesterase, catalytic, Pectinesterase inhibitor domain; Pectinesterase, catalytic, Pectinesterase inhibitor domain; Pectinesterase, catalytic, Pectinesterase inhibitor domain
hsd_id_Theobroma_cacao_327	XP_007012525.2; XP_007034153.2; XP_017974176.1; XP_017971624.1; XP_017983598.1; XP_017982981.1; XP_017971808.1	541; 578; 579; 556; 560; 613; 540	Pfam	PF00010; PF00010; PF00010; PF00010; PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_328	XP_007012536.2; XP_017978454.1; XP_007024744.2; XP_007042990.2; XP_017971525.1; XP_017978145.1; XP_017978487.1; XP_007042986.2; XP_017970010.1; XP_007042987.2	388; 363; 374; 365; 365; 363; 366; 370; 357; 358	Pfam	PF00657; PF00657; PF00657; PF00657; PF00657; PF00657; PF00657; PF00657; PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_329	XP_007012546.1; XP_017983511.1; XP_017980395.1; XP_007035651.2; XP_017974128.1; XP_007037102.2	852; 796; 809; 804; 843; 896	Pfam	PF00534, PF00862; PF00862, PF00534; PF00534, PF00862; PF00862, PF00534; PF00862, PF00534; PF00862, PF00534	Glycosyl transferases group 1, Sucrose synthase; Sucrose synthase, Glycosyl transferases group 1; Glycosyl transferases group 1, Sucrose synthase; Sucrose synthase, Glycosyl transferases group 1; Sucrose synthase, Glycosyl transferases group 1; Sucrose synthase, Glycosyl transferases group 1	IPR001296, IPR000368; IPR000368, IPR001296; IPR001296, IPR000368; IPR000368, IPR001296; IPR000368, IPR001296; IPR000368, IPR001296	Glycosyl transferase, family 1, Sucrose synthase; Sucrose synthase, Glycosyl transferase, family 1; Glycosyl transferase, family 1, Sucrose synthase; Sucrose synthase, Glycosyl transferase, family 1; Sucrose synthase, Glycosyl transferase, family 1; Sucrose synthase, Glycosyl transferase, family 1
hsd_id_Theobroma_cacao_330	XP_007012549.1; XP_007024731.2	119; 123	Pfam	PF02519; PF02519	Auxin responsive protein; Auxin responsive protein	IPR003676; IPR003676	Small auxin-up RNA; Small auxin-up RNA
hsd_id_Theobroma_cacao_331	XP_007012558.2; XP_017982603.1	514; 522	Pfam	PF00743; PF00743	Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like	IPR020946; IPR020946	Flavin monooxygenase-like; Flavin monooxygenase-like
hsd_id_Theobroma_cacao_332	XP_007012567.2; XP_007025113.2; XP_007040574.2	575; 548; 494	Pfam	PF02801, PF00109; PF00109, PF02801; PF02801, PF00109	Beta-ketoacyl synthase, C-terminal domain, Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, N-terminal domain, Beta-ketoacyl synthase, C-terminal domain; Beta-ketoacyl synthase, C-terminal domain, Beta-ketoacyl synthase, N-terminal domain	IPR014031, IPR014030; IPR014030, IPR014031; IPR014031, IPR014030	Beta-ketoacyl synthase, C-terminal, Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, N-terminal, Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, C-terminal, Beta-ketoacyl synthase, N-terminal
hsd_id_Theobroma_cacao_333	XP_007012578.2; XP_007014531.2	1146; 1115	Pfam	PF02362, PF02309, PF06507; PF02362, PF02309, PF06507	B3 DNA binding domain, AUX/IAA family, Auxin response factor; B3 DNA binding domain, AUX/IAA family, Auxin response factor	IPR003340, IPR033389, IPR010525; IPR003340, IPR033389, IPR010525	B3 DNA binding domain, AUX/IAA domain, Auxin response factor domain; B3 DNA binding domain, AUX/IAA domain, Auxin response factor domain
hsd_id_Theobroma_cacao_334	XP_007012585.2; XP_007017175.1; XP_007019844.2; XP_007022239.2; XP_007050316.2; XP_007050315.2; XP_017974790.1; XP_007020218.1; XP_007035091.1	149; 148; 153; 143; 151; 139; 151; 140; 137	Pfam	PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847	AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain	IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471	AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain
hsd_id_Theobroma_cacao_335	XP_007012590.2; XP_017978903.1	416; 422	Pfam	PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_336	XP_007012604.1; XP_017979087.1	128; 128	Pfam	PF01423; PF01423	LSM domain; LSM domain	IPR001163; IPR001163	LSM domain, eukaryotic/archaea-type; LSM domain, eukaryotic/archaea-type
hsd_id_Theobroma_cacao_337	XP_007012610.2; XP_017979273.1	758; 752	Pfam	PF13768; PF13768	von Willebrand factor type A domain; von Willebrand factor type A domain	IPR002035; IPR002035	von Willebrand factor, type A; von Willebrand factor, type A
hsd_id_Theobroma_cacao_338	XP_007012620.2; XP_017979406.1	638; 659	Pfam	PF01699; PF01699	Sodium/calcium exchanger protein; Sodium/calcium exchanger protein	IPR004837; IPR004837	Sodium/calcium exchanger membrane region; Sodium/calcium exchanger membrane region
hsd_id_Theobroma_cacao_339	XP_007012625.2; XP_007047459.2; XP_007018543.2; XP_017979275.1; XP_007038510.2; XP_007024750.2; XP_007041871.2	759; 760; 768; 767; 778; 772; 774	Pfam	PF02225, PF05922, PF00082, PF17766; PF02225, PF00082, PF17766, PF05922; PF00082, PF05922, PF02225, PF17766; PF17766, PF02225, PF05922, PF00082; PF05922, PF02225, PF17766, PF00082; PF00082, PF02225, PF05922, PF17766; PF00082, PF05922, PF17766, PF02225	PA domain, Peptidase inhibitor I9, Subtilase family, Fibronectin type-III domain; PA domain, Subtilase family, Fibronectin type-III domain, Peptidase inhibitor I9; Subtilase family, Peptidase inhibitor I9, PA domain, Fibronectin type-III domain; Fibronectin type-III domain, PA domain, Peptidase inhibitor I9, Subtilase family; Peptidase inhibitor I9, PA domain, Fibronectin type-III domain, Subtilase family; Subtilase family, PA domain, Peptidase inhibitor I9, Fibronectin type-III domain; Subtilase family, Peptidase inhibitor I9, Fibronectin type-III domain, PA domain	IPR003137, IPR010259, IPR000209, IPR041469; IPR003137, IPR000209, IPR041469, IPR010259; IPR000209, IPR010259, IPR003137, IPR041469; IPR041469, IPR003137, IPR010259, IPR000209; IPR010259, IPR003137, IPR041469, IPR000209; IPR000209, IPR003137, IPR010259, IPR041469; IPR000209, IPR010259, IPR041469, IPR003137	PA domain, Peptidase S8 propeptide/proteinase inhibitor I9, Peptidase S8/S53 domain, Subtilisin-like protease, fibronectin type-III domain; PA domain, Peptidase S8/S53 domain, Subtilisin-like protease, fibronectin type-III domain, Peptidase S8 propeptide/proteinase inhibitor I9; Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9, PA domain, Subtilisin-like protease, fibronectin type-III domain; Subtilisin-like protease, fibronectin type-III domain, PA domain, Peptidase S8 propeptide/proteinase inhibitor I9, Peptidase S8/S53 domain; Peptidase S8 propeptide/proteinase inhibitor I9, PA domain, Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain; Peptidase S8/S53 domain, PA domain, Peptidase S8 propeptide/proteinase inhibitor I9, Subtilisin-like protease, fibronectin type-III domain; Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9, Subtilisin-like protease, fibronectin type-III domain, PA domain
hsd_id_Theobroma_cacao_340	XP_007012628.2; XP_017979247.1	512; 511	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_341	XP_007012662.2; XP_017979481.1; XP_007020161.2; XP_007018069.2; XP_007041179.2; XP_007023452.2; XP_017969996.1	396; 458; 383; 372; 365; 432; 370	Pfam	PF00724; PF00724; PF00724; PF00724; PF00724; PF00724; PF00724	NADH:flavin oxidoreductase / NADH oxidase family; NADH:flavin oxidoreductase / NADH oxidase family; NADH:flavin oxidoreductase / NADH oxidase family; NADH:flavin oxidoreductase / NADH oxidase family; NADH:flavin oxidoreductase / NADH oxidase family; NADH:flavin oxidoreductase / NADH oxidase family; NADH:flavin oxidoreductase / NADH oxidase family	IPR001155; IPR001155; IPR001155; IPR001155; IPR001155; IPR001155; IPR001155	NADH:flavin oxidoreductase/NADH oxidase, N-terminal; NADH:flavin oxidoreductase/NADH oxidase, N-terminal; NADH:flavin oxidoreductase/NADH oxidase, N-terminal; NADH:flavin oxidoreductase/NADH oxidase, N-terminal; NADH:flavin oxidoreductase/NADH oxidase, N-terminal; NADH:flavin oxidoreductase/NADH oxidase, N-terminal; NADH:flavin oxidoreductase/NADH oxidase, N-terminal
hsd_id_Theobroma_cacao_342	XP_007012697.1; XP_017979256.1; XP_017973333.1	370; 369; 361	Pfam	PF08381, PF13713; PF08381, PF13713; PF13713, PF08381	Transcription factor regulating root and shoot growth via Pin3, Transcription factor BRX N-terminal domain; Transcription factor regulating root and shoot growth via Pin3, Transcription factor BRX N-terminal domain; Transcription factor BRX N-terminal domain, Transcription factor regulating root and shoot growth via Pin3	IPR013591, IPR027988; IPR013591, IPR027988; IPR027988, IPR013591	Brevis radix (BRX) domain, Transcription factor  BREVIS RADIX, N-terminal domain; Brevis radix (BRX) domain, Transcription factor  BREVIS RADIX, N-terminal domain; Transcription factor  BREVIS RADIX, N-terminal domain, Brevis radix (BRX) domain
hsd_id_Theobroma_cacao_343	XP_007012727.2; XP_017978984.1	533; 520	Pfam	PF00291; PF00291	Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme	IPR001926; IPR001926	Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme
hsd_id_Theobroma_cacao_344	XP_007012733.2; XP_017978069.1	141; 102	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_345	XP_007012734.2; XP_007038670.2	219; 200	Pfam	PF13869; PF13869	Nucleotide hydrolase; Nucleotide hydrolase	IPR016706; IPR016706	Cleavage/polyadenylation specificity factor subunit 5; Cleavage/polyadenylation specificity factor subunit 5
hsd_id_Theobroma_cacao_346	XP_007012738.1; XP_007012994.2	361; 354	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_347	XP_007012782.2; XP_017982026.1; XP_007051058.2	124; 121; 107	Pfam	PF12023; PF12023; PF12023	Domain of unknown function (DUF3511); Domain of unknown function (DUF3511); Domain of unknown function (DUF3511)	IPR021899; IPR021899; IPR021899	Protein of unknown function DUF3511; Protein of unknown function DUF3511; Protein of unknown function DUF3511
hsd_id_Theobroma_cacao_348	XP_007012783.2; XP_007024533.1; XP_017969305.1; XP_017977397.1; XP_017975461.1; XP_007013094.1; XP_017982801.1	470; 477; 458; 465; 460; 429; 427	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_349	XP_007012794.2; XP_007024517.2	389; 388	Pfam	PF01975; PF01975	Survival protein SurE; Survival protein SurE	IPR002828; IPR002828	Survival protein SurE-like phosphatase/nucleotidase; Survival protein SurE-like phosphatase/nucleotidase
hsd_id_Theobroma_cacao_350	XP_007012838.2; XP_017977981.1	502; 507	Pfam	PF00400, PF12265; PF12265, PF00400	WD domain, G-beta repeat, Histone-binding protein RBBP4 or subunit C of CAF1 complex; Histone-binding protein RBBP4 or subunit C of CAF1 complex, WD domain, G-beta repeat	IPR001680, IPR022052; IPR022052, IPR001680	WD40 repeat, Histone-binding protein RBBP4, N-terminal; Histone-binding protein RBBP4, N-terminal, WD40 repeat
hsd_id_Theobroma_cacao_351	XP_007012858.2; XP_017980097.1	231; 234	Pfam	PF00085; PF00085	Thioredoxin; Thioredoxin	IPR013766; IPR013766	Thioredoxin domain; Thioredoxin domain
hsd_id_Theobroma_cacao_352	XP_007012865.1; XP_007039476.2; XP_007039477.2	269; 269; 319	Pfam	PF00335; PF00335; PF00335	Tetraspanin family; Tetraspanin family; Tetraspanin family	IPR018499; IPR018499; IPR018499	Tetraspanin/Peripherin; Tetraspanin/Peripherin; Tetraspanin/Peripherin
hsd_id_Theobroma_cacao_353	XP_007012867.1; XP_007026207.2; XP_007049183.1; XP_007019201.2	306; 319; 316; 304	Pfam	PF03171, PF14226; PF14226, PF03171; PF03171, PF14226; PF03171, PF14226	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR044861, IPR026992; IPR026992, IPR044861; IPR044861, IPR026992; IPR044861, IPR026992	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_354	XP_007012879.2; XP_017984523.1	678; 697	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_355	XP_007012891.1; XP_007024447.2; XP_007024470.1; XP_017978462.1; XP_017982531.1	278; 274; 279; 280; 269	Pfam	PF06888; PF06888; PF06888; PF06888; PF06888	Putative Phosphatase; Putative Phosphatase; Putative Phosphatase; Putative Phosphatase; Putative Phosphatase	IPR016965; IPR016965; IPR016965; IPR016965; IPR016965	Phosphatase PHOSPHO-type; Phosphatase PHOSPHO-type; Phosphatase PHOSPHO-type; Phosphatase PHOSPHO-type; Phosphatase PHOSPHO-type
hsd_id_Theobroma_cacao_356	XP_007012907.1; XP_017982696.1; XP_007024441.2	122; 124; 119	Pfam	PF04718; PF04718; PF04718	Mitochondrial ATP synthase g subunit; Mitochondrial ATP synthase g subunit; Mitochondrial ATP synthase g subunit	IPR006808; IPR006808; IPR006808	ATP synthase, F0 complex, subunit G, mitochondrial; ATP synthase, F0 complex, subunit G, mitochondrial; ATP synthase, F0 complex, subunit G, mitochondrial
hsd_id_Theobroma_cacao_357	XP_007012915.2; XP_017972002.1; XP_007047308.1; XP_007045532.2; XP_017974179.1; XP_007044046.2; XP_017970257.1	238; 247; 247; 236; 247; 237; 261	Pfam	PF01596; PF01596; PF01596; PF01596; PF01596; PF01596; PF01596	O-methyltransferase; O-methyltransferase; O-methyltransferase; O-methyltransferase; O-methyltransferase; O-methyltransferase; O-methyltransferase	IPR002935; IPR002935; IPR002935; IPR002935; IPR002935; IPR002935; IPR002935	Class I-like SAM-dependent O-methyltransferase; Class I-like SAM-dependent O-methyltransferase; Class I-like SAM-dependent O-methyltransferase; Class I-like SAM-dependent O-methyltransferase; Class I-like SAM-dependent O-methyltransferase; Class I-like SAM-dependent O-methyltransferase; Class I-like SAM-dependent O-methyltransferase
hsd_id_Theobroma_cacao_358	XP_007012919.2; XP_017979454.1	150; 175	Pfam	PF01778; PF01778	Ribosomal L28e protein family; Ribosomal L28e protein family	IPR029004; IPR029004	Ribosomal L28e/Mak16; Ribosomal L28e/Mak16
hsd_id_Theobroma_cacao_359	XP_007012922.2; XP_007012923.2; XP_017982657.1	1002; 1002; 1020	Pfam	PF05193, PF00675; PF05193, PF00675; PF00675, PF05193	Peptidase M16 inactive domain, Insulinase (Peptidase family M16); Peptidase M16 inactive domain, Insulinase (Peptidase family M16); Insulinase (Peptidase family M16), Peptidase M16 inactive domain	IPR007863, IPR011765; IPR007863, IPR011765; IPR011765, IPR007863	Peptidase M16, C-terminal, Peptidase M16, N-terminal; Peptidase M16, C-terminal, Peptidase M16, N-terminal; Peptidase M16, N-terminal, Peptidase M16, C-terminal
hsd_id_Theobroma_cacao_360	XP_007012925.1; XP_007052563.1	120; 121	Pfam	PF01198; PF01198	Ribosomal protein L31e; Ribosomal protein L31e	IPR000054; IPR000054	Ribosomal protein L31e; Ribosomal protein L31e
hsd_id_Theobroma_cacao_361	XP_007012933.1; XP_007024390.1	62; 62	Pfam	PF04758; PF04758	Ribosomal protein S30; Ribosomal protein S30	IPR006846; IPR006846	Ribosomal protein S30; Ribosomal protein S30
hsd_id_Theobroma_cacao_362	XP_007012939.2; XP_017979333.1; XP_007019095.1; XP_017970521.1; XP_007039231.1; XP_007027877.2; XP_017977319.1	445; 448; 481; 449; 435; 432; 433	Pfam	PF07687, PF01546; PF01546, PF07687; PF01546, PF07687; PF01546, PF07687; PF07687, PF01546; PF01546, PF07687; PF07687, PF01546	Peptidase dimerisation domain, Peptidase family M20/M25/M40; Peptidase family M20/M25/M40, Peptidase dimerisation domain; Peptidase family M20/M25/M40, Peptidase dimerisation domain; Peptidase family M20/M25/M40, Peptidase dimerisation domain; Peptidase dimerisation domain, Peptidase family M20/M25/M40; Peptidase family M20/M25/M40, Peptidase dimerisation domain; Peptidase dimerisation domain, Peptidase family M20/M25/M40	IPR011650, IPR002933; IPR002933, IPR011650; IPR002933, IPR011650; IPR002933, IPR011650; IPR011650, IPR002933; IPR002933, IPR011650; IPR011650, IPR002933	Peptidase M20, dimerisation domain, Peptidase M20; Peptidase M20, Peptidase M20, dimerisation domain; Peptidase M20, Peptidase M20, dimerisation domain; Peptidase M20, Peptidase M20, dimerisation domain; Peptidase M20, dimerisation domain, Peptidase M20; Peptidase M20, Peptidase M20, dimerisation domain; Peptidase M20, dimerisation domain, Peptidase M20
hsd_id_Theobroma_cacao_363	XP_007012974.2; XP_007046313.2; XP_017974320.1; XP_007025530.2; XP_017970130.1	459; 434; 404; 313; 289	Pfam	PF02365; PF02365; PF02365; PF02365; PF02365	No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein	IPR003441; IPR003441; IPR003441; IPR003441; IPR003441	NAC domain; NAC domain; NAC domain; NAC domain; NAC domain
hsd_id_Theobroma_cacao_364	XP_007012976.2; XP_007039756.1; XP_007052285.2	286; 330; 316	Pfam	PF00782; PF00782; PF00782	Dual specificity phosphatase, catalytic domain; Dual specificity phosphatase, catalytic domain; Dual specificity phosphatase, catalytic domain	IPR000340; IPR000340; IPR000340	Dual specificity phosphatase, catalytic domain; Dual specificity phosphatase, catalytic domain; Dual specificity phosphatase, catalytic domain
hsd_id_Theobroma_cacao_365	XP_007012978.2; XP_007038298.2; XP_007024338.2; XP_007045549.1	258; 266; 259; 260	Pfam	PF03767; PF03767; PF03767; PF03767	HAD superfamily, subfamily IIIB (Acid phosphatase); HAD superfamily, subfamily IIIB (Acid phosphatase); HAD superfamily, subfamily IIIB (Acid phosphatase); HAD superfamily, subfamily IIIB (Acid phosphatase)	IPR005519; IPR005519; IPR005519; IPR005519	Acid phosphatase, class B-like; Acid phosphatase, class B-like; Acid phosphatase, class B-like; Acid phosphatase, class B-like
hsd_id_Theobroma_cacao_366	XP_007012983.1; XP_007018388.2; XP_007041415.2	416; 446; 464	Pfam	PF06219; PF06219; PF06219	Protein of unknown function (DUF1005); Protein of unknown function (DUF1005); Protein of unknown function (DUF1005)	IPR010410; IPR010410; IPR010410	Protein of unknown function DUF1005; Protein of unknown function DUF1005; Protein of unknown function DUF1005
hsd_id_Theobroma_cacao_367	XP_007012984.2; XP_007038301.2	242; 282	Pfam	PF04511; PF04511	Der1-like family; Der1-like family	IPR007599; IPR007599	Derlin; Derlin
hsd_id_Theobroma_cacao_368	XP_007012998.2; XP_007024332.2	175; 204	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_369	XP_007013021.1; XP_017978899.1; XP_007017793.2; XP_007015149.2	498; 498; 493; 506	Pfam	PF03727, PF00349; PF00349, PF03727; PF03727, PF00349; PF03727, PF00349	Hexokinase, Hexokinase; Hexokinase, Hexokinase; Hexokinase, Hexokinase; Hexokinase, Hexokinase	IPR022673, IPR022672; IPR022672, IPR022673; IPR022673, IPR022672; IPR022673, IPR022672	Hexokinase, C-terminal, Hexokinase, N-terminal; Hexokinase, N-terminal, Hexokinase, C-terminal; Hexokinase, C-terminal, Hexokinase, N-terminal; Hexokinase, C-terminal, Hexokinase, N-terminal
hsd_id_Theobroma_cacao_370	XP_007013030.1; XP_017971901.1; XP_017970000.1	340; 307; 306	Pfam	PF03446, PF14833; PF03446, PF14833; PF14833, PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase, NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; NAD binding domain of 6-phosphogluconate dehydrogenase, NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase, NAD binding domain of 6-phosphogluconate dehydrogenase	IPR006115, IPR029154; IPR006115, IPR029154; IPR029154, IPR006115	6-phosphogluconate dehydrogenase, NADP-binding, 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain; 6-phosphogluconate dehydrogenase, NADP-binding, 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain; 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain, 6-phosphogluconate dehydrogenase, NADP-binding
hsd_id_Theobroma_cacao_371	XP_007013043.2; XP_017985224.1; XP_007044881.2; XP_007021040.2	1239; 1255; 1258; 1252	Pfam	PF00005, PF00664; PF00005, PF00664; PF00005, PF00664; PF00664, PF00005	ABC transporter, ABC transporter transmembrane region; ABC transporter, ABC transporter transmembrane region; ABC transporter, ABC transporter transmembrane region; ABC transporter transmembrane region, ABC transporter	IPR003439, IPR011527; IPR003439, IPR011527; IPR003439, IPR011527; IPR011527, IPR003439	ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter type 1, transmembrane domain, ABC transporter-like, ATP-binding domain
hsd_id_Theobroma_cacao_372	XP_007013047.2; XP_007024303.2; XP_007038996.2; XP_007040507.2	393; 366; 409; 329	Pfam	PF00481; PF00481; PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932; IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_373	XP_007013055.1; XP_007024283.2	218; 210	Pfam	PF05553; PF05553	Cotton fibre expressed protein; Cotton fibre expressed protein	IPR008480; IPR008480	Protein of unknown function DUF761, plant; Protein of unknown function DUF761, plant
hsd_id_Theobroma_cacao_374	XP_007013066.2; XP_017983088.1	980; 997	Pfam	PF05664; PF05664	Unc-13 homolog; Unc-13 homolog	-; -	-; -
hsd_id_Theobroma_cacao_375	XP_007013072.2; XP_007052227.2	545; 503	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_376	XP_007013076.1; XP_017982731.1; XP_007034709.1; XP_017971258.1; XP_017970364.1; XP_017973171.1; XP_017973175.1; XP_007038317.2; XP_017972405.1; XP_007025811.2; XP_017974603.1; XP_007043260.2; XP_007034706.1; XP_017981745.1; XP_007016173.2	515; 510; 529; 517; 514; 563; 510; 507; 517; 521; 494; 452; 497; 500; 512	Pfam	PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083	Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter	IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828	Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like
hsd_id_Theobroma_cacao_377	XP_007013104.1; XP_007014514.2	206; 208	Pfam	PF01191, PF03871; PF03871, PF01191	RNA polymerase Rpb5, C-terminal domain, RNA polymerase Rpb5, N-terminal domain; RNA polymerase Rpb5, N-terminal domain, RNA polymerase Rpb5, C-terminal domain	IPR000783, IPR005571; IPR005571, IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal, RNA polymerase, Rpb5, N-terminal; RNA polymerase, Rpb5, N-terminal, RNA polymerase, subunit H/Rpb5 C-terminal
hsd_id_Theobroma_cacao_378	XP_007013107.2; XP_007024229.1; XP_007047687.1; XP_017981530.1; XP_017969720.1; XP_007034956.2; XP_007030567.2; XP_007024033.1; XP_017982172.1; XP_007030568.1; XP_007034953.2; XP_017973598.1; XP_007024034.1	313; 339; 376; 368; 242; 254; 249; 202; 216; 192; 192; 198; 191	Pfam	PF02309; PF02309; PF02309; PF02309; PF02309; PF02309; PF02309; PF02309; PF02309; PF02309; PF02309; PF02309; PF02309	AUX/IAA family; AUX/IAA family; AUX/IAA family; AUX/IAA family; AUX/IAA family; AUX/IAA family; AUX/IAA family; AUX/IAA family; AUX/IAA family; AUX/IAA family; AUX/IAA family; AUX/IAA family; AUX/IAA family	IPR033389; IPR033389; IPR033389; IPR033389; IPR033389; IPR033389; IPR033389; IPR033389; IPR033389; IPR033389; IPR033389; IPR033389; IPR033389	AUX/IAA domain; AUX/IAA domain; AUX/IAA domain; AUX/IAA domain; AUX/IAA domain; AUX/IAA domain; AUX/IAA domain; AUX/IAA domain; AUX/IAA domain; AUX/IAA domain; AUX/IAA domain; AUX/IAA domain; AUX/IAA domain
hsd_id_Theobroma_cacao_379	XP_007013110.2; XP_007024222.2	356; 317	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_380	XP_007013115.2; XP_007024216.2; XP_017977780.1	162; 190; 224	Pfam	PF08534; PF08534; PF08534	Redoxin; Redoxin; Redoxin	IPR013740; IPR013740; IPR013740	Redoxin; Redoxin; Redoxin
hsd_id_Theobroma_cacao_381	XP_007013118.2; XP_017977395.1	140; 136	Pfam	PF01521; PF01521	Iron-sulphur cluster biosynthesis; Iron-sulphur cluster biosynthesis	IPR000361; IPR000361	FeS cluster biogenesis; FeS cluster biogenesis
hsd_id_Theobroma_cacao_382	XP_007013121.1; XP_017979396.1	489; 508	Pfam	PF00083; PF00083	Sugar (and other) transporter; Sugar (and other) transporter	IPR005828; IPR005828	Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like
hsd_id_Theobroma_cacao_383	XP_007013139.2; XP_017978795.1; XP_007041712.2; XP_017984042.1; XP_017981404.1; XP_007051804.2; XP_017977890.1	521; 541; 573; 632; 553; 477; 694	Pfam	PF03759; PF03759; PF03759; PF03759; PF03759; PF03759; PF03759	PRONE (Plant-specific Rop nucleotide exchanger); PRONE (Plant-specific Rop nucleotide exchanger); PRONE (Plant-specific Rop nucleotide exchanger); PRONE (Plant-specific Rop nucleotide exchanger); PRONE (Plant-specific Rop nucleotide exchanger); PRONE (Plant-specific Rop nucleotide exchanger); PRONE (Plant-specific Rop nucleotide exchanger)	IPR005512; IPR005512; IPR005512; IPR005512; IPR005512; IPR005512; IPR005512	PRONE domain; PRONE domain; PRONE domain; PRONE domain; PRONE domain; PRONE domain; PRONE domain
hsd_id_Theobroma_cacao_384	XP_007013145.2; XP_007017513.1; XP_007046962.2; XP_007019557.2; XP_007048197.2	265; 262; 262; 256; 257	Pfam	PF04367; PF04367; PF04367; PF04367; PF04367	Protein of unknown function (DUF502); Protein of unknown function (DUF502); Protein of unknown function (DUF502); Protein of unknown function (DUF502); Protein of unknown function (DUF502)	IPR007462; IPR007462; IPR007462; IPR007462; IPR007462	Protein of unknown function DUF502; Protein of unknown function DUF502; Protein of unknown function DUF502; Protein of unknown function DUF502; Protein of unknown function DUF502
hsd_id_Theobroma_cacao_385	XP_007013174.2; XP_007013177.2; XP_007013362.2; XP_017971737.1; XP_007042751.2; XP_017978055.1; XP_007025694.1; XP_007043554.2	532; 508; 494; 538; 532; 506; 523; 528	Pfam	PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083; PF00083	Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter	IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828	Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like
hsd_id_Theobroma_cacao_386	XP_007013179.2; XP_007017502.1	313; 343	Pfam	PF04844; PF04844	Transcriptional repressor, ovate; Transcriptional repressor, ovate	IPR006458; IPR006458	Ovate  protein family, C-terminal; Ovate  protein family, C-terminal
hsd_id_Theobroma_cacao_387	XP_007013186.2; XP_007024159.2; XP_007035603.1	730; 714; 806	Pfam	PF00225; PF00225; PF00225	Kinesin motor domain; Kinesin motor domain; Kinesin motor domain	IPR001752; IPR001752; IPR001752	Kinesin motor domain; Kinesin motor domain; Kinesin motor domain
hsd_id_Theobroma_cacao_388	XP_007013205.2; XP_007030718.1; XP_017983082.1; XP_017983437.1; XP_007024284.2	665; 705; 712; 707; 727	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_389	XP_007013216.2; XP_017969864.1; XP_007021790.1	144; 142; 142	Pfam	PF01381, PF08523; PF01381, PF08523; PF01381, PF08523	Helix-turn-helix, Multiprotein bridging factor 1; Helix-turn-helix, Multiprotein bridging factor 1; Helix-turn-helix, Multiprotein bridging factor 1	IPR001387, IPR013729; IPR001387, IPR013729; IPR001387, IPR013729	Cro/C1-type helix-turn-helix domain, Multiprotein bridging factor 1, N-terminal; Cro/C1-type helix-turn-helix domain, Multiprotein bridging factor 1, N-terminal; Cro/C1-type helix-turn-helix domain, Multiprotein bridging factor 1, N-terminal
hsd_id_Theobroma_cacao_390	XP_007013244.2; XP_007043020.2; XP_007016544.1	133; 164; 221	Pfam	PF00403; PF00403; PF00403	Heavy-metal-associated domain; Heavy-metal-associated domain; Heavy-metal-associated domain	IPR006121; IPR006121; IPR006121	Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA
hsd_id_Theobroma_cacao_391	XP_007013246.2; XP_017982449.1	720; 738	Pfam	PF07227, PF00041; PF07227, PF00041	PHD - plant homeodomain finger protein, Fibronectin type III domain; PHD - plant homeodomain finger protein, Fibronectin type III domain	IPR032881, IPR003961; IPR032881, IPR003961	Oberon, PHD finger domain, Fibronectin type III; Oberon, PHD finger domain, Fibronectin type III
hsd_id_Theobroma_cacao_392	XP_007013265.2; XP_007013266.2; XP_017984849.1	345; 340; 338	Pfam	PF11416, PF05739; PF11416, PF05739; PF11416, PF05739	Syntaxin-5 N-terminal, Sly1p-binding domain, SNARE domain; Syntaxin-5 N-terminal, Sly1p-binding domain, SNARE domain; Syntaxin-5 N-terminal, Sly1p-binding domain, SNARE domain	IPR021538, IPR000727; IPR021538, IPR000727; IPR021538, IPR000727	Syntaxin-5, N-terminal, Sly1p-binding domain, Target SNARE coiled-coil homology domain; Syntaxin-5, N-terminal, Sly1p-binding domain, Target SNARE coiled-coil homology domain; Syntaxin-5, N-terminal, Sly1p-binding domain, Target SNARE coiled-coil homology domain
hsd_id_Theobroma_cacao_393	XP_007013268.2; XP_017974908.1	708; 744	Pfam	PF06075; PF06075	Plant protein of unknown function (DUF936); Plant protein of unknown function (DUF936)	IPR010341; IPR010341	Protein of unknown function DUF936, plant; Protein of unknown function DUF936, plant
hsd_id_Theobroma_cacao_394	XP_007013270.1; XP_017983073.1	319; 319	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_395	XP_007013290.2; XP_007024020.2	209; 223	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_396	XP_007013295.2; XP_007024019.1; XP_017982176.1	355; 371; 342	Pfam	PF03171, PF14226; PF14226, PF03171; PF03171, PF14226	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR044861, IPR026992; IPR026992, IPR044861; IPR044861, IPR026992	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_397	XP_007013296.2; XP_007013778.1; XP_017969331.1; XP_007034391.2	856; 919; 828; 777	Pfam	PF08513, PF00400; PF00400, PF08513; PF00400, PF08513; PF08513, PF00400	LisH, WD domain, G-beta repeat; WD domain, G-beta repeat, LisH; WD domain, G-beta repeat, LisH; LisH, WD domain, G-beta repeat	IPR006594, IPR001680; IPR001680, IPR006594; IPR001680, IPR006594; IPR006594, IPR001680	LIS1 homology motif, WD40 repeat; WD40 repeat, LIS1 homology motif; WD40 repeat, LIS1 homology motif; LIS1 homology motif, WD40 repeat
hsd_id_Theobroma_cacao_398	XP_007013315.2; XP_017975440.1; XP_017971822.1	542; 605; 615	Pfam	PF12041, PF03514; PF03514, PF12041; PF03514, PF12041	Transcriptional regulator DELLA protein N terminal, GRAS domain family; GRAS domain family, Transcriptional regulator DELLA protein N terminal; GRAS domain family, Transcriptional regulator DELLA protein N terminal	IPR021914, IPR005202; IPR005202, IPR021914; IPR005202, IPR021914	Transcriptional factor DELLA, N-terminal, Transcription factor GRAS; Transcription factor GRAS, Transcriptional factor DELLA, N-terminal; Transcription factor GRAS, Transcriptional factor DELLA, N-terminal
hsd_id_Theobroma_cacao_399	XP_007013326.2; XP_007013801.2; XP_007034926.1; XP_017974605.1; XP_007034925.2; XP_007034923.2; XP_017971963.1; XP_007017550.1; XP_007051450.2; XP_007044356.2; XP_017983496.1; XP_007038507.2	516; 503; 524; 517; 511; 510; 507; 515; 530; 496; 535; 499	Pfam	PF08541, PF08392; PF08541, PF08392; PF08541, PF08392; PF08541, PF08392; PF08392, PF08541; PF08392, PF08541; PF08541, PF08392; PF08541, PF08392; PF08541, PF08392; PF08392, PF08541; PF08392, PF08541; PF08541, PF08392	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal, FAE1/Type III polyketide synthase-like protein; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal, FAE1/Type III polyketide synthase-like protein; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal, FAE1/Type III polyketide synthase-like protein	IPR013747, IPR013601; IPR013747, IPR013601; IPR013747, IPR013601; IPR013747, IPR013601; IPR013601, IPR013747; IPR013601, IPR013747; IPR013747, IPR013601; IPR013747, IPR013601; IPR013747, IPR013601; IPR013601, IPR013747; IPR013601, IPR013747; IPR013747, IPR013601	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal, FAE1/Type III polyketide synthase-like protein; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal, FAE1/Type III polyketide synthase-like protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal, FAE1/Type III polyketide synthase-like protein; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal; FAE1/Type III polyketide synthase-like protein, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal, FAE1/Type III polyketide synthase-like protein
hsd_id_Theobroma_cacao_400	XP_007013328.1; XP_007023964.1; XP_017984873.1; XP_017979861.1; XP_007030756.1; XP_007021101.1; XP_007050747.1; XP_007025913.2; XP_007030982.2; XP_007016498.1; XP_007027098.1	135; 134; 138; 138; 140; 134; 139; 135; 142; 149; 153	Pfam	PF00125, PF16211; PF16211, PF00125; PF00125, PF16211; PF00125, PF16211; PF00125, PF16211; PF00125, PF16211; PF16211, PF00125; PF16211, PF00125; PF00125, PF16211; PF16211, PF00125; PF00125, PF16211	Core histone H2A/H2B/H3/H4, C-terminus of histone H2A; C-terminus of histone H2A, Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4, C-terminus of histone H2A; Core histone H2A/H2B/H3/H4, C-terminus of histone H2A; Core histone H2A/H2B/H3/H4, C-terminus of histone H2A; Core histone H2A/H2B/H3/H4, C-terminus of histone H2A; C-terminus of histone H2A, Core histone H2A/H2B/H3/H4; C-terminus of histone H2A, Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4, C-terminus of histone H2A; C-terminus of histone H2A, Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4, C-terminus of histone H2A	IPR007125, IPR032454; IPR032454, IPR007125; IPR007125, IPR032454; IPR007125, IPR032454; IPR007125, IPR032454; IPR007125, IPR032454; IPR032454, IPR007125; IPR032454, IPR007125; IPR007125, IPR032454; IPR032454, IPR007125; IPR007125, IPR032454	Histone H2A/H2B/H3, Histone H2A, C-terminal domain; Histone H2A, C-terminal domain, Histone H2A/H2B/H3; Histone H2A/H2B/H3, Histone H2A, C-terminal domain; Histone H2A/H2B/H3, Histone H2A, C-terminal domain; Histone H2A/H2B/H3, Histone H2A, C-terminal domain; Histone H2A/H2B/H3, Histone H2A, C-terminal domain; Histone H2A, C-terminal domain, Histone H2A/H2B/H3; Histone H2A, C-terminal domain, Histone H2A/H2B/H3; Histone H2A/H2B/H3, Histone H2A, C-terminal domain; Histone H2A, C-terminal domain, Histone H2A/H2B/H3; Histone H2A/H2B/H3, Histone H2A, C-terminal domain
hsd_id_Theobroma_cacao_401	XP_007013329.2; XP_017979255.1	349; 351	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_402	XP_007013332.1; XP_007013803.1	141; 138	Pfam	PF03330; PF03330	Lytic transglycolase; Lytic transglycolase	IPR009009; IPR009009	RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain
hsd_id_Theobroma_cacao_403	XP_007013334.2; XP_017978023.1; XP_007013808.2; XP_007051221.2; XP_017973464.1; XP_017975548.1	671; 697; 666; 716; 720; 714	Pfam	PF00955; PF00955; PF00955; PF00955; PF00955; PF00955	HCO3- transporter family; HCO3- transporter family; HCO3- transporter family; HCO3- transporter family; HCO3- transporter family; HCO3- transporter family	IPR011531; IPR011531; IPR011531; IPR011531; IPR011531; IPR011531	Bicarbonate transporter, C-terminal; Bicarbonate transporter, C-terminal; Bicarbonate transporter, C-terminal; Bicarbonate transporter, C-terminal; Bicarbonate transporter, C-terminal; Bicarbonate transporter, C-terminal
hsd_id_Theobroma_cacao_404	XP_007013335.2; XP_007013809.2	885; 908	Pfam	PF11834, PF00520, PF12796, PF00027; PF12796, PF00520, PF11834, PF00027	KHA, dimerisation domain of potassium ion channel, Ion transport protein, Ankyrin repeats (3 copies), Cyclic nucleotide-binding domain; Ankyrin repeats (3 copies), Ion transport protein, KHA, dimerisation domain of potassium ion channel, Cyclic nucleotide-binding domain	IPR021789, IPR005821, IPR020683, IPR000595; IPR020683, IPR005821, IPR021789, IPR000595	KHA domain, Ion transport domain, Ankyrin repeat-containing domain, Cyclic nucleotide-binding domain; Ankyrin repeat-containing domain, Ion transport domain, KHA domain, Cyclic nucleotide-binding domain
hsd_id_Theobroma_cacao_405	XP_007013351.1; XP_017983331.1; XP_007023937.2	257; 249; 256	Pfam	PF02230; PF02230; PF02230	Phospholipase/Carboxylesterase; Phospholipase/Carboxylesterase; Phospholipase/Carboxylesterase	IPR003140; IPR003140; IPR003140	Phospholipase/carboxylesterase/thioesterase; Phospholipase/carboxylesterase/thioesterase; Phospholipase/carboxylesterase/thioesterase
hsd_id_Theobroma_cacao_406	XP_007013353.2; XP_017973643.1; XP_007017472.1; XP_017983935.1; XP_017970198.1; XP_017978122.1	218; 222; 242; 230; 244; 223	Pfam	PF05903; PF05903; PF05903; PF05903; PF05903; PF05903	PPPDE putative peptidase domain; PPPDE putative peptidase domain; PPPDE putative peptidase domain; PPPDE putative peptidase domain; PPPDE putative peptidase domain; PPPDE putative peptidase domain	IPR008580; IPR008580; IPR008580; IPR008580; IPR008580; IPR008580	PPPDE peptidase domain; PPPDE peptidase domain; PPPDE peptidase domain; PPPDE peptidase domain; PPPDE peptidase domain; PPPDE peptidase domain
hsd_id_Theobroma_cacao_407	XP_007013368.1; XP_007013365.2; XP_017983499.1	103; 103; 114	Pfam	PF03386; PF03386; PF03386	Early nodulin 93 ENOD93 protein; Early nodulin 93 ENOD93 protein; Early nodulin 93 ENOD93 protein	IPR005050; IPR005050; IPR005050	Early nodulin 93 ENOD93 protein; Early nodulin 93 ENOD93 protein; Early nodulin 93 ENOD93 protein
hsd_id_Theobroma_cacao_408	XP_007013376.2; XP_017979121.1	354; 332	Pfam	PF01177; PF01177	Asp/Glu/Hydantoin racemase; Asp/Glu/Hydantoin racemase	IPR015942; IPR015942	Asp/Glu/hydantoin racemase; Asp/Glu/hydantoin racemase
hsd_id_Theobroma_cacao_409	XP_007013388.2; XP_017972250.1; XP_007045236.1; XP_007021423.2; XP_007038375.2	192; 291; 128; 145; 163	Pfam	PF01221; PF01221; PF01221; PF01221; PF01221	Dynein light chain type 1; Dynein light chain type 1; Dynein light chain type 1; Dynein light chain type 1; Dynein light chain type 1	IPR001372; IPR001372; IPR001372; IPR001372; IPR001372	Dynein light chain, type 1/2; Dynein light chain, type 1/2; Dynein light chain, type 1/2; Dynein light chain, type 1/2; Dynein light chain, type 1/2
hsd_id_Theobroma_cacao_410	XP_007013389.1; XP_007023869.1; XP_007041249.1; XP_017984307.1; XP_017975261.1	168; 170; 201; 190; 179	Pfam	PF00903; PF00903; PF00903; PF00903; PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	IPR004360; IPR004360; IPR004360; IPR004360; IPR004360	Glyoxalase/fosfomycin resistance/dioxygenase domain; Glyoxalase/fosfomycin resistance/dioxygenase domain; Glyoxalase/fosfomycin resistance/dioxygenase domain; Glyoxalase/fosfomycin resistance/dioxygenase domain; Glyoxalase/fosfomycin resistance/dioxygenase domain
hsd_id_Theobroma_cacao_411	XP_007013400.1; XP_007014726.1	428; 438	Pfam	PF00646, PF01344; PF01344, PF00646	F-box domain, Kelch motif; Kelch motif, F-box domain	IPR001810, IPR006652; IPR006652, IPR001810	F-box domain, Kelch repeat type 1; Kelch repeat type 1, F-box domain
hsd_id_Theobroma_cacao_412	XP_007013410.2; XP_007029089.2; XP_007014728.1	628; 617; 622	Pfam	PF00270, PF00271; PF00270, PF00271; PF00271, PF00270	DEAD/DEAH box helicase, Helicase conserved C-terminal domain; DEAD/DEAH box helicase, Helicase conserved C-terminal domain; Helicase conserved C-terminal domain, DEAD/DEAH box helicase	IPR011545, IPR001650; IPR011545, IPR001650; IPR001650, IPR011545	DEAD/DEAH box helicase domain, Helicase, C-terminal; DEAD/DEAH box helicase domain, Helicase, C-terminal; Helicase, C-terminal, DEAD/DEAH box helicase domain
hsd_id_Theobroma_cacao_413	XP_007013411.1; XP_007013844.2; XP_007030533.2; XP_017975535.1	130; 130; 125; 177	Pfam	PF01918; PF01918; PF01918; PF01918	Alba; Alba; Alba; Alba	IPR002775; IPR002775; IPR002775; IPR002775	DNA/RNA-binding protein Alba-like; DNA/RNA-binding protein Alba-like; DNA/RNA-binding protein Alba-like; DNA/RNA-binding protein Alba-like
hsd_id_Theobroma_cacao_414	XP_007013412.2; XP_007013845.1	406; 395	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_415	XP_007013419.1; XP_017985384.1	169; 180	Pfam	PF00717; PF00717	Peptidase S24-like; Peptidase S24-like	IPR015927; IPR015927	Peptidase S24/S26A/S26B/S26C; Peptidase S24/S26A/S26B/S26C
hsd_id_Theobroma_cacao_416	XP_007013425.2; XP_017983179.1; XP_007013427.2; XP_007039888.2; XP_017969635.1	591; 600; 583; 583; 595	Pfam	PF00854; PF00854; PF00854; PF00854; PF00854	POT family; POT family; POT family; POT family; POT family	IPR000109; IPR000109; IPR000109; IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_417	XP_007013428.1; XP_017983183.1	360; 349	Pfam	PF03151; PF03151	Triose-phosphate Transporter family; Triose-phosphate Transporter family	IPR004853; IPR004853	Sugar phosphate transporter domain; Sugar phosphate transporter domain
hsd_id_Theobroma_cacao_418	XP_007013429.2; XP_017977297.1; XP_017980201.1; XP_007043504.1; XP_007029951.2; XP_017971729.1; XP_007034494.2	425; 415; 422; 450; 400; 396; 436	Pfam	PF02485; PF02485; PF02485; PF02485; PF02485; PF02485; PF02485	Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme	IPR003406; IPR003406; IPR003406; IPR003406; IPR003406; IPR003406; IPR003406	Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14
hsd_id_Theobroma_cacao_419	XP_007013452.1; XP_007034316.2	463; 452	Pfam	PF00566; PF00566	Rab-GTPase-TBC domain; Rab-GTPase-TBC domain	IPR000195; IPR000195	Rab-GTPase-TBC domain; Rab-GTPase-TBC domain
hsd_id_Theobroma_cacao_420	XP_007013463.1; XP_017981935.1; XP_017979195.1	177; 207; 173	Pfam	PF13259; PF13259; PF13259	Protein of unknown function (DUF4050); Protein of unknown function (DUF4050); Protein of unknown function (DUF4050)	IPR025124; IPR025124; IPR025124	Domain of unknown function DUF4050; Domain of unknown function DUF4050; Domain of unknown function DUF4050
hsd_id_Theobroma_cacao_421	XP_007013474.2; XP_007039460.1; XP_017979224.1	293; 291; 315	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_422	XP_007013485.1; XP_017978083.1; XP_017973138.1; XP_007015813.2; XP_007025069.2	390; 400; 409; 381; 402	Pfam	PF00332; PF00332; PF00332; PF00332; PF00332	Glycosyl hydrolases family 17; Glycosyl hydrolases family 17; Glycosyl hydrolases family 17; Glycosyl hydrolases family 17; Glycosyl hydrolases family 17	IPR000490; IPR000490; IPR000490; IPR000490; IPR000490	Glycoside hydrolase family 17; Glycoside hydrolase family 17; Glycoside hydrolase family 17; Glycoside hydrolase family 17; Glycoside hydrolase family 17
hsd_id_Theobroma_cacao_423	XP_007013487.2; XP_007013488.2	336; 261	Pfam	PF02298; PF02298	Plastocyanin-like domain; Plastocyanin-like domain	IPR003245; IPR003245	Phytocyanin domain; Phytocyanin domain
hsd_id_Theobroma_cacao_424	XP_007013503.1; XP_017983517.1; XP_017970095.1	633; 652; 582	Pfam	PF07651; PF07651; PF07651	ANTH domain; ANTH domain; ANTH domain	IPR011417; IPR011417; IPR011417	AP180 N-terminal homology (ANTH) domain; AP180 N-terminal homology (ANTH) domain; AP180 N-terminal homology (ANTH) domain
hsd_id_Theobroma_cacao_425	XP_007013514.2; XP_007044815.1; XP_007031609.2	368; 391; 387	Pfam	PF04724; PF04724; PF04724	Glycosyltransferase family 17; Glycosyltransferase family 17; Glycosyltransferase family 17	IPR006813; IPR006813; IPR006813	Glycosyl transferase, family 17; Glycosyl transferase, family 17; Glycosyl transferase, family 17
hsd_id_Theobroma_cacao_426	XP_007013527.1; XP_007023257.2; XP_007035464.2	277; 271; 261	Pfam	PF02845; PF02845; PF02845	CUE domain; CUE domain; CUE domain	IPR003892; IPR003892; IPR003892	Ubiquitin system component CUE; Ubiquitin system component CUE; Ubiquitin system component CUE
hsd_id_Theobroma_cacao_427	XP_007013537.2; XP_007023276.2	673; 764	Pfam	PF05699, PF14372; PF05699, PF14372	hAT family C-terminal dimerisation region, Domain of unknown function (DUF4413); hAT family C-terminal dimerisation region, Domain of unknown function (DUF4413)	IPR008906, IPR025525; IPR008906, IPR025525	HAT, C-terminal dimerisation domain, hAT-like transposase, RNase-H fold; HAT, C-terminal dimerisation domain, hAT-like transposase, RNase-H fold
hsd_id_Theobroma_cacao_428	XP_007013577.2; XP_017969527.1	773; 771	Pfam	PF00654, PF00571; PF00654, PF00571	Voltage gated chloride channel, CBS domain; Voltage gated chloride channel, CBS domain	IPR001807, IPR000644; IPR001807, IPR000644	Chloride channel, voltage gated, CBS domain; Chloride channel, voltage gated, CBS domain
hsd_id_Theobroma_cacao_429	XP_007013600.2; XP_007023297.2; XP_017977384.1	770; 768; 760	Pfam	PF03030; PF03030; PF03030	Inorganic H+ pyrophosphatase; Inorganic H+ pyrophosphatase; Inorganic H+ pyrophosphatase	IPR004131; IPR004131; IPR004131	Pyrophosphate-energised proton pump; Pyrophosphate-energised proton pump; Pyrophosphate-energised proton pump
hsd_id_Theobroma_cacao_430	XP_007013606.1; XP_017982227.1; XP_017982097.1; XP_017978512.1	353; 357; 353; 353	Pfam	PF14226, PF03171; PF03171, PF14226; PF14226, PF03171; PF03171, PF14226	non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR026992, IPR044861; IPR044861, IPR026992; IPR026992, IPR044861; IPR044861, IPR026992	Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_431	XP_007013615.1; XP_017982282.1; XP_017982564.1	125; 139; 219	Pfam	PF05617; PF05617; PF05617	Prolamin-like; Prolamin-like; Prolamin-like	IPR008502; IPR008502; IPR008502	Prolamin-like domain; Prolamin-like domain; Prolamin-like domain
hsd_id_Theobroma_cacao_432	XP_007013619.2; XP_017978522.1	201; 245	Pfam	PF01928; PF01928	CYTH domain; CYTH domain	IPR023577; IPR023577	CYTH domain; CYTH domain
hsd_id_Theobroma_cacao_433	XP_007013636.2; XP_007025217.2; XP_007025218.2; XP_007022024.1; XP_017978064.1; XP_017980385.1; XP_017980389.1; XP_017978456.1; XP_017972816.1; XP_017976073.1; XP_007029342.2	356; 368; 357; 351; 366; 354; 329; 363; 351; 362; 362	Pfam	PF03171, PF14226; PF03171, PF14226; PF03171, PF14226; PF14226, PF03171; PF03171, PF14226; PF14226, PF03171; PF03171, PF14226; PF03171, PF14226; PF03171, PF14226; PF14226, PF03171; PF03171, PF14226	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR044861, IPR026992; IPR044861, IPR026992; IPR044861, IPR026992; IPR026992, IPR044861; IPR044861, IPR026992; IPR026992, IPR044861; IPR044861, IPR026992; IPR044861, IPR026992; IPR044861, IPR026992; IPR026992, IPR044861; IPR044861, IPR026992	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_434	XP_007013638.1; XP_007023328.2	573; 564	Pfam	PF06813; PF06813	Nodulin-like; Nodulin-like	IPR010658; IPR010658	Nodulin-like; Nodulin-like
hsd_id_Theobroma_cacao_435	XP_007013645.2; XP_017981585.1	340; 359	Pfam	PF08241; PF08241	Methyltransferase domain; Methyltransferase domain	IPR013216; IPR013216	Methyltransferase type 11; Methyltransferase type 11
hsd_id_Theobroma_cacao_436	XP_007013646.2; XP_017970981.1; XP_007041640.2; XP_017970982.1	526; 521; 521; 521	Pfam	PF00743; PF00743; PF00743; PF00743	Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like	IPR020946; IPR020946; IPR020946; IPR020946	Flavin monooxygenase-like; Flavin monooxygenase-like; Flavin monooxygenase-like; Flavin monooxygenase-like
hsd_id_Theobroma_cacao_437	XP_007013667.2; XP_007038387.2; XP_017972186.1	497; 522; 538	Pfam	PF07690; PF07690; PF07690	Major Facilitator Superfamily; Major Facilitator Superfamily; Major Facilitator Superfamily	IPR011701; IPR011701; IPR011701	Major facilitator superfamily; Major facilitator superfamily; Major facilitator superfamily
hsd_id_Theobroma_cacao_438	XP_007013670.1; XP_007013786.1; XP_007018092.1; XP_017969601.1; XP_007051229.2; XP_007035909.1	380; 381; 382; 380; 397; 365	Pfam	PF00481; PF00481; PF00481; PF00481; PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932; IPR001932; IPR001932; IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_439	XP_007013682.2; XP_017973146.1	540; 526	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_440	XP_007013691.2; XP_007041053.2; XP_007022630.2; XP_017969630.1; XP_017974297.1; XP_017983135.1	1411; 1315; 1240; 1252; 1160; 1138	Pfam	PF07714, PF00564; PF00564, PF07714; PF00564, PF07714; PF07714, PF00564; PF07714, PF00564; PF00564, PF07714	Protein tyrosine and serine/threonine kinase, PB1 domain; PB1 domain, Protein tyrosine and serine/threonine kinase; PB1 domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, PB1 domain; Protein tyrosine and serine/threonine kinase, PB1 domain; PB1 domain, Protein tyrosine and serine/threonine kinase	IPR001245, IPR000270; IPR000270, IPR001245; IPR000270, IPR001245; IPR001245, IPR000270; IPR001245, IPR000270; IPR000270, IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain, PB1 domain; PB1 domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; PB1 domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, PB1 domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, PB1 domain; PB1 domain, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_441	XP_007013708.2; XP_007049474.1	654; 659	Pfam	PF02990; PF02990	Endomembrane protein 70; Endomembrane protein 70	IPR004240; IPR004240	Nonaspanin (TM9SF); Nonaspanin (TM9SF)
hsd_id_Theobroma_cacao_442	XP_007013725.2; XP_007023980.2	464; 462	Pfam	PF16983; PF16983	Molybdate transporter of MFS superfamily; Molybdate transporter of MFS superfamily	IPR031563; IPR031563	Molybdate transporter 1/2; Molybdate transporter 1/2
hsd_id_Theobroma_cacao_443	XP_007013748.2; XP_017978079.1; XP_007019157.2; XP_007019153.2; XP_007019154.2	501; 489; 493; 499; 393	Pfam	PF00134, PF02984; PF00134, PF02984; PF02984, PF00134; PF02984, PF00134; PF00134, PF02984	Cyclin, N-terminal domain, Cyclin, C-terminal domain; Cyclin, N-terminal domain, Cyclin, C-terminal domain; Cyclin, C-terminal domain, Cyclin, N-terminal domain; Cyclin, C-terminal domain, Cyclin, N-terminal domain; Cyclin, N-terminal domain, Cyclin, C-terminal domain	IPR006671, IPR004367; IPR006671, IPR004367; IPR004367, IPR006671; IPR004367, IPR006671; IPR006671, IPR004367	Cyclin, N-terminal, Cyclin, C-terminal domain; Cyclin, N-terminal, Cyclin, C-terminal domain; Cyclin, C-terminal domain, Cyclin, N-terminal; Cyclin, C-terminal domain, Cyclin, N-terminal; Cyclin, N-terminal, Cyclin, C-terminal domain
hsd_id_Theobroma_cacao_444	XP_007013787.2; XP_017983273.1; XP_007013791.2; XP_017978981.1; XP_007023998.2; XP_017979262.1; XP_017982129.1; XP_017984115.1; XP_007027659.2; XP_017983763.1; XP_017983198.1; XP_017979368.1; XP_017978902.1; XP_017979457.1; XP_017974890.1; XP_017976798.1; XP_017975808.1; XP_017974929.1; XP_017979524.1; XP_007016113.2; XP_017974889.1; XP_017983274.1; XP_017976799.1	1447; 1449; 1450; 1463; 1446; 1474; 1385; 1483; 1460; 1452; 1420; 1452; 1517; 1470; 1413; 1453; 1448; 1447; 1448; 1437; 1480; 1402; 1385	Pfam	PF08370, PF00005, PF01061, PF14510, PF19055; PF08370, PF01061, PF14510, PF00005, PF19055; PF08370, PF00005, PF01061, PF14510, PF19055; PF00005, PF01061, PF14510, PF19055, PF08370; PF08370, PF19055, PF00005, PF14510, PF01061; PF01061, PF00005, PF08370, PF14510, PF19055; PF01061, PF00005, PF14510, PF08370, PF19055; PF08370, PF00005, PF19055, PF14510, PF01061; PF19055, PF08370, PF00005, PF14510, PF01061; PF19055, PF14510, PF01061, PF00005, PF08370; PF00005, PF19055, PF08370, PF14510, PF01061; PF19055, PF01061, PF00005, PF08370, PF14510; PF01061, PF00005, PF14510, PF08370, PF19055; PF00005, PF14510, PF08370, PF01061, PF19055; PF01061, PF00005, PF19055, PF08370, PF14510; PF01061, PF19055, PF00005, PF14510, PF08370; PF01061, PF00005, PF08370, PF14510, PF19055; PF00005, PF01061, PF19055, PF14510, PF08370; PF08370, PF00005, PF19055, PF14510, PF01061; PF19055, PF00005, PF14510, PF08370, PF01061; PF19055, PF14510, PF01061, PF08370, PF00005; PF00005, PF08370, PF01061, PF19055, PF14510; PF19055, PF14510, PF01061, PF08370, PF00005	Plant PDR ABC transporter associated, ABC transporter, ABC-2 type transporter, ABC-transporter N-terminal, ABC-2 type transporter; Plant PDR ABC transporter associated, ABC-2 type transporter, ABC-transporter N-terminal, ABC transporter, ABC-2 type transporter; Plant PDR ABC transporter associated, ABC transporter, ABC-2 type transporter, ABC-transporter N-terminal, ABC-2 type transporter; ABC transporter, ABC-2 type transporter, ABC-transporter N-terminal, ABC-2 type transporter, Plant PDR ABC transporter associated; Plant PDR ABC transporter associated, ABC-2 type transporter, ABC transporter, ABC-transporter N-terminal, ABC-2 type transporter; ABC-2 type transporter, ABC transporter, Plant PDR ABC transporter associated, ABC-transporter N-terminal, ABC-2 type transporter; ABC-2 type transporter, ABC transporter, ABC-transporter N-terminal, Plant PDR ABC transporter associated, ABC-2 type transporter; Plant PDR ABC transporter associated, ABC transporter, ABC-2 type transporter, ABC-transporter N-terminal, ABC-2 type transporter; ABC-2 type transporter, Plant PDR ABC transporter associated, ABC transporter, ABC-transporter N-terminal, ABC-2 type transporter; ABC-2 type transporter, ABC-transporter N-terminal, ABC-2 type transporter, ABC transporter, Plant PDR ABC transporter associated; ABC transporter, ABC-2 type transporter, Plant PDR ABC transporter associated, ABC-transporter N-terminal, ABC-2 type transporter; ABC-2 type transporter, ABC-2 type transporter, ABC transporter, Plant PDR ABC transporter associated, ABC-transporter N-terminal; ABC-2 type transporter, ABC transporter, ABC-transporter N-terminal, Plant PDR ABC transporter associated, ABC-2 type transporter; ABC transporter, ABC-transporter N-terminal, Plant PDR ABC transporter associated, ABC-2 type transporter, ABC-2 type transporter; ABC-2 type transporter, ABC transporter, ABC-2 type transporter, Plant PDR ABC transporter associated, ABC-transporter N-terminal; ABC-2 type transporter, ABC-2 type transporter, ABC transporter, ABC-transporter N-terminal, Plant PDR ABC transporter associated; ABC-2 type transporter, ABC transporter, Plant PDR ABC transporter associated, ABC-transporter N-terminal, ABC-2 type transporter; ABC transporter, ABC-2 type transporter, ABC-2 type transporter, ABC-transporter N-terminal, Plant PDR ABC transporter associated; Plant PDR ABC transporter associated, ABC transporter, ABC-2 type transporter, ABC-transporter N-terminal, ABC-2 type transporter; ABC-2 type transporter, ABC transporter, ABC-transporter N-terminal, Plant PDR ABC transporter associated, ABC-2 type transporter; ABC-2 type transporter, ABC-transporter N-terminal, ABC-2 type transporter, Plant PDR ABC transporter associated, ABC transporter; ABC transporter, Plant PDR ABC transporter associated, ABC-2 type transporter, ABC-2 type transporter, ABC-transporter N-terminal; ABC-2 type transporter, ABC-transporter N-terminal, ABC-2 type transporter, Plant PDR ABC transporter associated, ABC transporter	IPR013581, IPR003439, IPR013525, IPR029481, IPR043926; IPR013581, IPR013525, IPR029481, IPR003439, IPR043926; IPR013581, IPR003439, IPR013525, IPR029481, IPR043926; IPR003439, IPR013525, IPR029481, IPR043926, IPR013581; IPR013581, IPR043926, IPR003439, IPR029481, IPR013525; IPR013525, IPR003439, IPR013581, IPR029481, IPR043926; IPR013525, IPR003439, IPR029481, IPR013581, IPR043926; IPR013581, IPR003439, IPR043926, IPR029481, IPR013525; IPR043926, IPR013581, IPR003439, IPR029481, IPR013525; IPR043926, IPR029481, IPR013525, IPR003439, IPR013581; IPR003439, IPR043926, IPR013581, IPR029481, IPR013525; IPR043926, IPR013525, IPR003439, IPR013581, IPR029481; IPR013525, IPR003439, IPR029481, IPR013581, IPR043926; IPR003439, IPR029481, IPR013581, IPR013525, IPR043926; IPR013525, IPR003439, IPR043926, IPR013581, IPR029481; IPR013525, IPR043926, IPR003439, IPR029481, IPR013581; IPR013525, IPR003439, IPR013581, IPR029481, IPR043926; IPR003439, IPR013525, IPR043926, IPR029481, IPR013581; IPR013581, IPR003439, IPR043926, IPR029481, IPR013525; IPR043926, IPR003439, IPR029481, IPR013581, IPR013525; IPR043926, IPR029481, IPR013525, IPR013581, IPR003439; IPR003439, IPR013581, IPR013525, IPR043926, IPR029481; IPR043926, IPR029481, IPR013525, IPR013581, IPR003439	Plant PDR ABC transporter associated, ABC transporter-like, ATP-binding domain, ABC-2 type transporter, ABC-transporter, N-terminal domain, ABC transporter family G domain; Plant PDR ABC transporter associated, ABC-2 type transporter, ABC-transporter, N-terminal domain, ABC transporter-like, ATP-binding domain, ABC transporter family G domain; Plant PDR ABC transporter associated, ABC transporter-like, ATP-binding domain, ABC-2 type transporter, ABC-transporter, N-terminal domain, ABC transporter family G domain; ABC transporter-like, ATP-binding domain, ABC-2 type transporter, ABC-transporter, N-terminal domain, ABC transporter family G domain, Plant PDR ABC transporter associated; Plant PDR ABC transporter associated, ABC transporter family G domain, ABC transporter-like, ATP-binding domain, ABC-transporter, N-terminal domain, ABC-2 type transporter; ABC-2 type transporter, ABC transporter-like, ATP-binding domain, Plant PDR ABC transporter associated, ABC-transporter, N-terminal domain, ABC transporter family G domain; ABC-2 type transporter, ABC transporter-like, ATP-binding domain, ABC-transporter, N-terminal domain, Plant PDR ABC transporter associated, ABC transporter family G domain; Plant PDR ABC transporter associated, ABC transporter-like, ATP-binding domain, ABC transporter family G domain, ABC-transporter, N-terminal domain, ABC-2 type transporter; ABC transporter family G domain, Plant PDR ABC transporter associated, ABC transporter-like, ATP-binding domain, ABC-transporter, N-terminal domain, ABC-2 type transporter; ABC transporter family G domain, ABC-transporter, N-terminal domain, ABC-2 type transporter, ABC transporter-like, ATP-binding domain, Plant PDR ABC transporter associated; ABC transporter-like, ATP-binding domain, ABC transporter family G domain, Plant PDR ABC transporter associated, ABC-transporter, N-terminal domain, ABC-2 type transporter; ABC transporter family G domain, ABC-2 type transporter, ABC transporter-like, ATP-binding domain, Plant PDR ABC transporter associated, ABC-transporter, N-terminal domain; ABC-2 type transporter, ABC transporter-like, ATP-binding domain, ABC-transporter, N-terminal domain, Plant PDR ABC transporter associated, ABC transporter family G domain; ABC transporter-like, ATP-binding domain, ABC-transporter, N-terminal domain, Plant PDR ABC transporter associated, ABC-2 type transporter, ABC transporter family G domain; ABC-2 type transporter, ABC transporter-like, ATP-binding domain, ABC transporter family G domain, Plant PDR ABC transporter associated, ABC-transporter, N-terminal domain; ABC-2 type transporter, ABC transporter family G domain, ABC transporter-like, ATP-binding domain, ABC-transporter, N-terminal domain, Plant PDR ABC transporter associated; ABC-2 type transporter, ABC transporter-like, ATP-binding domain, Plant PDR ABC transporter associated, ABC-transporter, N-terminal domain, ABC transporter family G domain; ABC transporter-like, ATP-binding domain, ABC-2 type transporter, ABC transporter family G domain, ABC-transporter, N-terminal domain, Plant PDR ABC transporter associated; Plant PDR ABC transporter associated, ABC transporter-like, ATP-binding domain, ABC transporter family G domain, ABC-transporter, N-terminal domain, ABC-2 type transporter; ABC transporter family G domain, ABC transporter-like, ATP-binding domain, ABC-transporter, N-terminal domain, Plant PDR ABC transporter associated, ABC-2 type transporter; ABC transporter family G domain, ABC-transporter, N-terminal domain, ABC-2 type transporter, Plant PDR ABC transporter associated, ABC transporter-like, ATP-binding domain; ABC transporter-like, ATP-binding domain, Plant PDR ABC transporter associated, ABC-2 type transporter, ABC transporter family G domain, ABC-transporter, N-terminal domain; ABC transporter family G domain, ABC-transporter, N-terminal domain, ABC-2 type transporter, Plant PDR ABC transporter associated, ABC transporter-like, ATP-binding domain
hsd_id_Theobroma_cacao_445	XP_007013804.2; XP_017975597.1; XP_017981932.1; XP_017969806.1; XP_007047752.2	713; 722; 738; 711; 714	Pfam	PF13292, PF02779, PF02780; PF02779, PF13292, PF02780; PF02780, PF13292, PF02779; PF02779, PF13292, PF02780; PF02779, PF13292, PF02780	1-deoxy-D-xylulose-5-phosphate synthase, Transketolase, pyrimidine binding domain, Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain, 1-deoxy-D-xylulose-5-phosphate synthase, Transketolase, C-terminal domain; Transketolase, C-terminal domain, 1-deoxy-D-xylulose-5-phosphate synthase, Transketolase, pyrimidine binding domain; Transketolase, pyrimidine binding domain, 1-deoxy-D-xylulose-5-phosphate synthase, Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain, 1-deoxy-D-xylulose-5-phosphate synthase, Transketolase, C-terminal domain	IPR005477, IPR005475, IPR033248; IPR005475, IPR005477, IPR033248; IPR033248, IPR005477, IPR005475; IPR005475, IPR005477, IPR033248; IPR005475, IPR005477, IPR033248	Deoxyxylulose-5-phosphate synthase, Transketolase-like, pyrimidine-binding domain, Transketolase, C-terminal domain; Transketolase-like, pyrimidine-binding domain, Deoxyxylulose-5-phosphate synthase, Transketolase, C-terminal domain; Transketolase, C-terminal domain, Deoxyxylulose-5-phosphate synthase, Transketolase-like, pyrimidine-binding domain; Transketolase-like, pyrimidine-binding domain, Deoxyxylulose-5-phosphate synthase, Transketolase, C-terminal domain; Transketolase-like, pyrimidine-binding domain, Deoxyxylulose-5-phosphate synthase, Transketolase, C-terminal domain
hsd_id_Theobroma_cacao_446	XP_007013814.1; XP_007023946.1; XP_007028767.2; XP_007052493.2	375; 372; 368; 385	Pfam	PF04862; PF04862; PF04862; PF04862	Protein of unknown function (DUF642); Protein of unknown function (DUF642); Protein of unknown function (DUF642); Protein of unknown function (DUF642)	IPR006946; IPR006946; IPR006946; IPR006946	Domain of unknown function DUF642; Domain of unknown function DUF642; Domain of unknown function DUF642; Domain of unknown function DUF642
hsd_id_Theobroma_cacao_447	XP_007013833.1; XP_017978108.1	152; 145	Pfam	PF00641; PF00641	Zn-finger in Ran binding protein and others; Zn-finger in Ran binding protein and others	IPR001876; IPR001876	Zinc finger, RanBP2-type; Zinc finger, RanBP2-type
hsd_id_Theobroma_cacao_448	XP_007013837.2; XP_007023890.1	212; 190	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_449	XP_007013842.1; XP_017981277.1; XP_007018605.2; XP_017982127.1; XP_017977238.1	1085; 1091; 1085; 1096; 1099	Pfam	PF14569, PF03552; PF03552, PF14569; PF03552, PF14569; PF03552, PF14569; PF03552, PF14569	Zinc-binding RING-finger, Cellulose synthase; Cellulose synthase, Zinc-binding RING-finger; Cellulose synthase, Zinc-binding RING-finger; Cellulose synthase, Zinc-binding RING-finger; Cellulose synthase, Zinc-binding RING-finger	IPR027934, IPR005150; IPR005150, IPR027934; IPR005150, IPR027934; IPR005150, IPR027934; IPR005150, IPR027934	Cellulose synthase, RING-type zinc finger, Cellulose synthase; Cellulose synthase, Cellulose synthase, RING-type zinc finger; Cellulose synthase, Cellulose synthase, RING-type zinc finger; Cellulose synthase, Cellulose synthase, RING-type zinc finger; Cellulose synthase, Cellulose synthase, RING-type zinc finger
hsd_id_Theobroma_cacao_450	XP_007013884.1; XP_017984910.1; XP_017983419.1; XP_017975563.1; XP_017984186.1; XP_007043281.2; XP_017981287.1; XP_007017341.2; XP_017982924.1; XP_007052442.2; XP_007043286.2; XP_017975417.1; XP_017978730.1; XP_017970367.1	476; 456; 465; 466; 480; 487; 492; 501; 483; 497; 476; 471; 483; 476	Pfam	PF00450; PF00450; PF00450; PF00450; PF00450; PF00450; PF00450; PF00450; PF00450; PF00450; PF00450; PF00450; PF00450; PF00450	Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase	IPR001563; IPR001563; IPR001563; IPR001563; IPR001563; IPR001563; IPR001563; IPR001563; IPR001563; IPR001563; IPR001563; IPR001563; IPR001563; IPR001563	Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase
hsd_id_Theobroma_cacao_451	XP_007013889.2; XP_007023516.2	550; 526	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_452	XP_007013905.1; XP_017970914.1	259; 266	Pfam	PF00117; PF00117	Glutamine amidotransferase class-I; Glutamine amidotransferase class-I	IPR017926; IPR017926	Glutamine amidotransferase; Glutamine amidotransferase
hsd_id_Theobroma_cacao_453	XP_007013943.2; XP_007046369.1	273; 263	Pfam	PF13023; PF13023	HD domain; HD domain	IPR006674; IPR006674	HD domain; HD domain
hsd_id_Theobroma_cacao_454	XP_007013955.2; XP_007052175.2; XP_007015493.2	271; 276; 285	Pfam	PF00335; PF00335; PF00335	Tetraspanin family; Tetraspanin family; Tetraspanin family	IPR018499; IPR018499; IPR018499	Tetraspanin/Peripherin; Tetraspanin/Peripherin; Tetraspanin/Peripherin
hsd_id_Theobroma_cacao_455	XP_007013956.1; XP_017983320.1	379; 379	Pfam	PF00892; PF00892	EamA-like transporter family; EamA-like transporter family	IPR000620; IPR000620	EamA domain; EamA domain
hsd_id_Theobroma_cacao_456	XP_007013992.2; XP_007013994.2; XP_017983954.1; XP_017982247.1; XP_007013995.2	130; 129; 131; 138; 126	Pfam	PF03330; PF03330; PF03330; PF03330; PF03330	Lytic transglycolase; Lytic transglycolase; Lytic transglycolase; Lytic transglycolase; Lytic transglycolase	IPR009009; IPR009009; IPR009009; IPR009009; IPR009009	RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain
hsd_id_Theobroma_cacao_457	XP_007014001.2; XP_017982602.1	318; 237	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_458	XP_007014030.2; XP_007030168.2	649; 559	Pfam	PF13015, PF12999; PF13015, PF12999	Glucosidase II beta subunit-like protein, Glucosidase II beta subunit-like; Glucosidase II beta subunit-like protein, Glucosidase II beta subunit-like	IPR036607, IPR028146; IPR036607, IPR028146	Glucosidase 2 subunit beta-like, Glucosidase II beta subunit, N-terminal; Glucosidase 2 subunit beta-like, Glucosidase II beta subunit, N-terminal
hsd_id_Theobroma_cacao_459	XP_007014033.2; XP_017976724.1; XP_007043166.2	506; 500; 510	Pfam	PF00224, PF02887; PF02887, PF00224; PF02887, PF00224	Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain; Pyruvate kinase, alpha/beta domain, Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain, Pyruvate kinase, barrel domain	IPR015793, IPR015795; IPR015795, IPR015793; IPR015795, IPR015793	Pyruvate kinase, barrel, Pyruvate kinase, C-terminal; Pyruvate kinase, C-terminal, Pyruvate kinase, barrel; Pyruvate kinase, C-terminal, Pyruvate kinase, barrel
hsd_id_Theobroma_cacao_460	XP_007014038.2; XP_017976056.1	367; 348	Pfam	PF13639, PF14369; PF13639, PF14369	Ring finger domain, zinc-ribbon; Ring finger domain, zinc-ribbon	IPR001841, IPR039525; IPR001841, IPR039525	Zinc finger, RING-type, E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon; Zinc finger, RING-type, E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon
hsd_id_Theobroma_cacao_461	XP_007014051.2; XP_017978459.1; XP_007030312.2; XP_017972065.1; XP_007036315.1	421; 425; 444; 465; 469	Pfam	PF14365, PF03080; PF03080, PF14365; PF14365, PF03080; PF14365, PF03080; PF14365, PF03080	Neprosin activation peptide, Neprosin; Neprosin, Neprosin activation peptide; Neprosin activation peptide, Neprosin; Neprosin activation peptide, Neprosin; Neprosin activation peptide, Neprosin	IPR025521, IPR004314; IPR004314, IPR025521; IPR025521, IPR004314; IPR025521, IPR004314; IPR025521, IPR004314	Neprosin activation peptide, Neprosin; Neprosin, Neprosin activation peptide; Neprosin activation peptide, Neprosin; Neprosin activation peptide, Neprosin; Neprosin activation peptide, Neprosin
hsd_id_Theobroma_cacao_462	XP_007014100.2; XP_017972599.1; XP_007023225.2	382; 364; 371	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_463	XP_007014116.2; XP_007043758.1; XP_007038171.2	187; 211; 216	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_464	XP_007014134.2; XP_017980901.1; XP_017974073.1	448; 412; 361	Pfam	PF05057; PF05057; PF05057	Putative serine esterase (DUF676); Putative serine esterase (DUF676); Putative serine esterase (DUF676)	IPR007751; IPR007751; IPR007751	Domain of unknown function DUF676, lipase-like; Domain of unknown function DUF676, lipase-like; Domain of unknown function DUF676, lipase-like
hsd_id_Theobroma_cacao_465	XP_007014136.1; XP_007014137.1; XP_007041421.2; XP_007027162.2; XP_007041422.1; XP_017970203.1; XP_007041425.2; XP_017970641.1; XP_007051550.2; XP_017970186.1	195; 166; 159; 236; 156; 162; 159; 161; 214; 164	Pfam	PF00188; PF00188; PF00188; PF00188; PF00188; PF00188; PF00188; PF00188; PF00188; PF00188	Cysteine-rich secretory protein family; Cysteine-rich secretory protein family; Cysteine-rich secretory protein family; Cysteine-rich secretory protein family; Cysteine-rich secretory protein family; Cysteine-rich secretory protein family; Cysteine-rich secretory protein family; Cysteine-rich secretory protein family; Cysteine-rich secretory protein family; Cysteine-rich secretory protein family	IPR014044; IPR014044; IPR014044; IPR014044; IPR014044; IPR014044; IPR014044; IPR014044; IPR014044; IPR014044	CAP domain; CAP domain; CAP domain; CAP domain; CAP domain; CAP domain; CAP domain; CAP domain; CAP domain; CAP domain
hsd_id_Theobroma_cacao_466	XP_007014160.2; XP_007025782.2; XP_017983795.1	642; 635; 605	Pfam	PF07887; PF07887; PF07887	Calmodulin binding protein-like; Calmodulin binding protein-like; Calmodulin binding protein-like	IPR012416; IPR012416; IPR012416	CALMODULIN-BINDING PROTEIN60; CALMODULIN-BINDING PROTEIN60; CALMODULIN-BINDING PROTEIN60
hsd_id_Theobroma_cacao_467	XP_007014165.2; XP_017983916.1; XP_007035759.2; XP_007014173.1; XP_007014183.2; XP_007014179.2; XP_007014176.2; XP_007015526.1; XP_007034180.2; XP_007025220.2; XP_017970836.1; XP_017970584.1; XP_017969889.1; XP_017975136.1; XP_007043386.1; XP_017978189.1; XP_017982119.1; XP_007047639.2; XP_007049742.2; XP_017982954.1; XP_007041418.1; XP_007035457.2	290; 290; 290; 294; 296; 282; 293; 285; 291; 291; 294; 293; 293; 293; 294; 277; 272; 289; 286; 287; 295; 281	Pfam	PF00722, PF06955; PF06955, PF00722; PF00722, PF06955; PF06955, PF00722; PF06955, PF00722; PF00722, PF06955; PF06955, PF00722; PF00722, PF06955; PF00722, PF06955; PF06955, PF00722; PF00722, PF06955; PF00722, PF06955; PF00722, PF06955; PF06955, PF00722; PF06955, PF00722; PF00722, PF06955; PF06955, PF00722; PF06955, PF00722; PF00722, PF06955; PF00722, PF06955; PF00722, PF06955; PF06955, PF00722	Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16	IPR000757, IPR010713; IPR010713, IPR000757; IPR000757, IPR010713; IPR010713, IPR000757; IPR010713, IPR000757; IPR000757, IPR010713; IPR010713, IPR000757; IPR000757, IPR010713; IPR000757, IPR010713; IPR010713, IPR000757; IPR000757, IPR010713; IPR000757, IPR010713; IPR000757, IPR010713; IPR010713, IPR000757; IPR010713, IPR000757; IPR000757, IPR010713; IPR010713, IPR000757; IPR010713, IPR000757; IPR000757, IPR010713; IPR000757, IPR010713; IPR000757, IPR010713; IPR010713, IPR000757	Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16
hsd_id_Theobroma_cacao_468	XP_007014186.2; XP_017975279.1; XP_007031152.2	286; 317; 316	Pfam	PF03059; PF03059; PF03059	Nicotianamine synthase protein; Nicotianamine synthase protein; Nicotianamine synthase protein	IPR004298; IPR004298; IPR004298	Nicotianamine synthase; Nicotianamine synthase; Nicotianamine synthase
hsd_id_Theobroma_cacao_469	XP_007014251.2; XP_017982598.1; XP_007024618.2; XP_017969779.1; XP_017985151.1; XP_017983593.1; XP_007047337.2; XP_017977578.1	547; 544; 579; 520; 495; 495; 510; 503	Pfam	PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847	AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain	IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471	AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain
hsd_id_Theobroma_cacao_470	XP_007014268.2; XP_007018234.2	710; 693	Pfam	PF00175, PF00258, PF00667; PF00175, PF00258, PF00667	Oxidoreductase NAD-binding domain, Flavodoxin, FAD binding domain; Oxidoreductase NAD-binding domain, Flavodoxin, FAD binding domain	IPR001433, IPR008254, IPR003097; IPR001433, IPR008254, IPR003097	Oxidoreductase FAD/NAD(P)-binding, Flavodoxin/nitric oxide synthase, Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding; Oxidoreductase FAD/NAD(P)-binding, Flavodoxin/nitric oxide synthase, Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding
hsd_id_Theobroma_cacao_471	XP_007014293.2; XP_007041290.2	255; 232	Pfam	PF01106; PF01106	NifU-like domain; NifU-like domain	IPR001075; IPR001075	NIF system FeS cluster assembly, NifU, C-terminal; NIF system FeS cluster assembly, NifU, C-terminal
hsd_id_Theobroma_cacao_472	XP_007014307.2; XP_007024812.2; XP_017978798.1; XP_007040423.1; XP_007031597.2	314; 314; 317; 304; 351	Pfam	PF01263; PF01263; PF01263; PF01263; PF01263	Aldose 1-epimerase; Aldose 1-epimerase; Aldose 1-epimerase; Aldose 1-epimerase; Aldose 1-epimerase	IPR008183; IPR008183; IPR008183; IPR008183; IPR008183	Aldose 1-/Glucose-6-phosphate 1-epimerase; Aldose 1-/Glucose-6-phosphate 1-epimerase; Aldose 1-/Glucose-6-phosphate 1-epimerase; Aldose 1-/Glucose-6-phosphate 1-epimerase; Aldose 1-/Glucose-6-phosphate 1-epimerase
hsd_id_Theobroma_cacao_473	XP_007014320.1; XP_017983893.1; XP_017978805.1; XP_007025249.2; XP_007019797.1; XP_007019795.2; XP_017975979.1; XP_007019704.2	360; 383; 361; 380; 368; 375; 365; 364	Pfam	PF00657; PF00657; PF00657; PF00657; PF00657; PF00657; PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_474	XP_007014413.2; XP_017971596.1; XP_017983642.1	572; 565; 542	Pfam	PF07651; PF07651; PF07651	ANTH domain; ANTH domain; ANTH domain	IPR011417; IPR011417; IPR011417	AP180 N-terminal homology (ANTH) domain; AP180 N-terminal homology (ANTH) domain; AP180 N-terminal homology (ANTH) domain
hsd_id_Theobroma_cacao_475	XP_007014427.1; XP_007026561.1; XP_007026560.1	115; 115; 112	Pfam	PF01187; PF01187; PF01187	Macrophage migration inhibitory factor (MIF); Macrophage migration inhibitory factor (MIF); Macrophage migration inhibitory factor (MIF)	IPR001398; IPR001398; IPR001398	Macrophage migration inhibitory factor; Macrophage migration inhibitory factor; Macrophage migration inhibitory factor
hsd_id_Theobroma_cacao_476	XP_007014495.2; XP_007023810.2	1082; 1081	Pfam	PF00690, PF00702, PF00122, PF12515, PF00689; PF12515, PF00122, PF00702, PF00690, PF00689	Cation transporter/ATPase, N-terminus, haloacid dehalogenase-like hydrolase, E1-E2 ATPase, Ca2+-ATPase N terminal autoinhibitory domain, Cation transporting ATPase, C-terminus; Ca2+-ATPase N terminal autoinhibitory domain, E1-E2 ATPase, haloacid dehalogenase-like hydrolase, Cation transporter/ATPase, N-terminus, Cation transporting ATPase, C-terminus	IPR004014, -, -, IPR024750, IPR006068; IPR024750, -, -, IPR004014, IPR006068	Cation-transporting P-type ATPase, N-terminal, -, -, Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain, Cation-transporting P-type ATPase, C-terminal; Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain, -, -, Cation-transporting P-type ATPase, N-terminal, Cation-transporting P-type ATPase, C-terminal
hsd_id_Theobroma_cacao_477	XP_007014498.1; XP_007046782.1; XP_017972467.1; XP_007031532.1; XP_017973607.1; XP_007050085.1	131; 130; 171; 107; 131; 175	Pfam	PF00462; PF00462; PF00462; PF00462; PF00462; PF00462	Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin	IPR002109; IPR002109; IPR002109; IPR002109; IPR002109; IPR002109	Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin
hsd_id_Theobroma_cacao_478	XP_007014506.1; XP_017979682.1; XP_017982410.1; XP_007015781.2; XP_007014507.2; XP_017977933.1	210; 260; 208; 208; 205; 214	Pfam	PF00190; PF00190; PF00190; PF00190; PF00190; PF00190	Cupin; Cupin; Cupin; Cupin; Cupin; Cupin	IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045	Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1
hsd_id_Theobroma_cacao_479	XP_007014526.2; XP_017983703.1; XP_007023329.1	208; 206; 216	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_480	XP_007014556.1; XP_007018848.2; XP_007035634.1; XP_007039622.2; XP_007052405.1; XP_017982844.1; XP_007048013.2; XP_017978168.1	222; 177; 145; 164; 85; 242; 161; 172	Pfam	PF04570; PF04570; PF04570; PF04570; PF04570; PF04570; PF04570; PF04570	zinc-finger of the FCS-type, C2-C2; zinc-finger of the FCS-type, C2-C2; zinc-finger of the FCS-type, C2-C2; zinc-finger of the FCS-type, C2-C2; zinc-finger of the FCS-type, C2-C2; zinc-finger of the FCS-type, C2-C2; zinc-finger of the FCS-type, C2-C2; zinc-finger of the FCS-type, C2-C2	IPR007650; IPR007650; IPR007650; IPR007650; IPR007650; IPR007650; IPR007650; IPR007650	Zf-FLZ domain; Zf-FLZ domain; Zf-FLZ domain; Zf-FLZ domain; Zf-FLZ domain; Zf-FLZ domain; Zf-FLZ domain; Zf-FLZ domain
hsd_id_Theobroma_cacao_481	XP_007014566.2; XP_017976272.1; XP_007015928.2	446; 471; 488	Pfam	PF03140; PF03140; PF03140	Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function	IPR004158; IPR004158; IPR004158	Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant
hsd_id_Theobroma_cacao_482	XP_007014602.2; XP_017972049.1; XP_007021545.2; XP_007018763.1	300; 283; 286; 281	Pfam	PF00481; PF00481; PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932; IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_483	XP_007014661.1; XP_017983988.1; XP_007041705.2; XP_017969500.1; XP_017972091.1; XP_007017955.2; XP_007026109.2; XP_017975555.1; XP_017980952.1; XP_017974168.1; XP_007038406.2; XP_007039921.2; XP_017984295.1; XP_017984293.1	552; 553; 547; 549; 540; 541; 542; 537; 549; 594; 591; 591; 528; 593	Pfam	PF07731, PF00394, PF07732; PF00394, PF07732, PF07731; PF07731, PF00394, PF07732; PF07731, PF07732, PF00394; PF00394, PF07732, PF07731; PF07731, PF00394, PF07732; PF00394, PF07731, PF07732; PF00394, PF07731, PF07732; PF07731, PF00394, PF07732; PF07732, PF07731, PF00394; PF00394, PF07731, PF07732; PF00394, PF07731, PF07732; PF07732, PF07731, PF00394; PF07732, PF00394, PF07731	Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase	IPR011706, IPR001117, IPR011707; IPR001117, IPR011707, IPR011706; IPR011706, IPR001117, IPR011707; IPR011706, IPR011707, IPR001117; IPR001117, IPR011707, IPR011706; IPR011706, IPR001117, IPR011707; IPR001117, IPR011706, IPR011707; IPR001117, IPR011706, IPR011707; IPR011706, IPR001117, IPR011707; IPR011707, IPR011706, IPR001117; IPR001117, IPR011706, IPR011707; IPR001117, IPR011706, IPR011707; IPR011707, IPR011706, IPR001117; IPR011707, IPR001117, IPR011706	Multicopper oxidase, C-terminal, Multicopper oxidase, type 1, Multicopper oxidase, N-termianl; Multicopper oxidase, type 1, Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal; Multicopper oxidase, C-terminal, Multicopper oxidase, type 1, Multicopper oxidase, N-termianl; Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl, Multicopper oxidase, type 1; Multicopper oxidase, type 1, Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal; Multicopper oxidase, C-terminal, Multicopper oxidase, type 1, Multicopper oxidase, N-termianl; Multicopper oxidase, type 1, Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl; Multicopper oxidase, type 1, Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl; Multicopper oxidase, C-terminal, Multicopper oxidase, type 1, Multicopper oxidase, N-termianl; Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal, Multicopper oxidase, type 1; Multicopper oxidase, type 1, Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl; Multicopper oxidase, type 1, Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl; Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal, Multicopper oxidase, type 1; Multicopper oxidase, N-termianl, Multicopper oxidase, type 1, Multicopper oxidase, C-terminal
hsd_id_Theobroma_cacao_484	XP_007014666.1; XP_017977367.1; XP_007042689.1; XP_007032501.2; XP_017985460.1; XP_007018369.1; XP_017982405.1	449; 449; 450; 450; 451; 451; 358	Pfam	PF03953, PF00091; PF03953, PF00091; PF00091, PF03953; PF00091, PF03953; PF00091, PF03953; PF00091, PF03953; PF00091, PF03953	Tubulin C-terminal domain, Tubulin/FtsZ family, GTPase domain; Tubulin C-terminal domain, Tubulin/FtsZ family, GTPase domain; Tubulin/FtsZ family, GTPase domain, Tubulin C-terminal domain; Tubulin/FtsZ family, GTPase domain, Tubulin C-terminal domain; Tubulin/FtsZ family, GTPase domain, Tubulin C-terminal domain; Tubulin/FtsZ family, GTPase domain, Tubulin C-terminal domain; Tubulin/FtsZ family, GTPase domain, Tubulin C-terminal domain	IPR018316, IPR003008; IPR018316, IPR003008; IPR003008, IPR018316; IPR003008, IPR018316; IPR003008, IPR018316; IPR003008, IPR018316; IPR003008, IPR018316	Tubulin/FtsZ, 2-layer sandwich domain, Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain, Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, GTPase domain, Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ, GTPase domain, Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ, GTPase domain, Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ, GTPase domain, Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ, GTPase domain, Tubulin/FtsZ, 2-layer sandwich domain
hsd_id_Theobroma_cacao_485	XP_007014672.1; XP_017982000.1; XP_007052515.1; XP_007027342.1; XP_007027931.1; XP_007041671.2; XP_007017774.1; XP_007016779.2; XP_007017980.1	205; 216; 239; 218; 215; 228; 240; 222; 219	Pfam	PF03641; PF03641; PF03641; PF03641; PF03641; PF03641; PF03641; PF03641; PF03641	Possible lysine decarboxylase; Possible lysine decarboxylase; Possible lysine decarboxylase; Possible lysine decarboxylase; Possible lysine decarboxylase; Possible lysine decarboxylase; Possible lysine decarboxylase; Possible lysine decarboxylase; Possible lysine decarboxylase	IPR031100; IPR031100; IPR031100; IPR031100; IPR031100; IPR031100; IPR031100; IPR031100; IPR031100	LOG family; LOG family; LOG family; LOG family; LOG family; LOG family; LOG family; LOG family; LOG family
hsd_id_Theobroma_cacao_486	XP_007014687.1; XP_017981783.1; XP_017969465.1; XP_017984258.1; XP_017973704.1; XP_007038940.1; XP_007020324.1; XP_017983112.1; XP_017971038.1; XP_017981127.1; XP_007021721.1	176; 157; 148; 148; 148; 148; 148; 148; 148; 154; 204	Pfam	PF00179; PF00179; PF00179; PF00179; PF00179; PF00179; PF00179; PF00179; PF00179; PF00179; PF00179	Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme	IPR000608; IPR000608; IPR000608; IPR000608; IPR000608; IPR000608; IPR000608; IPR000608; IPR000608; IPR000608; IPR000608	Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2
hsd_id_Theobroma_cacao_487	XP_007014695.2; XP_017983457.1	363; 356	Pfam	PF03171, PF14226; PF14226, PF03171	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily	IPR044861, IPR026992; IPR026992, IPR044861	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain
hsd_id_Theobroma_cacao_488	XP_007014714.1; XP_007045651.2	399; 386	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_489	XP_007014733.2; XP_007048944.1; XP_017975624.1	386; 394; 441	Pfam	PF00494; PF00494; PF00494	Squalene/phytoene synthase; Squalene/phytoene synthase; Squalene/phytoene synthase	IPR002060; IPR002060; IPR002060	Squalene/phytoene synthase; Squalene/phytoene synthase; Squalene/phytoene synthase
hsd_id_Theobroma_cacao_490	XP_007014734.1; XP_007052623.2; XP_007029080.1	187; 195; 205	Pfam	PF14368; PF14368; PF14368	Probable lipid transfer; Probable lipid transfer; Probable lipid transfer	IPR016140; IPR016140; IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
hsd_id_Theobroma_cacao_491	XP_007014768.2; XP_007041239.2	922; 843	Pfam	PF00145, PF01426, PF00385; PF00385, PF00145, PF01426	C-5 cytosine-specific DNA methylase, BAH domain, Chromo (CHRromatin Organisation MOdifier) domain; Chromo (CHRromatin Organisation MOdifier) domain, C-5 cytosine-specific DNA methylase, BAH domain	IPR001525, IPR001025, IPR023780; IPR023780, IPR001525, IPR001025	C-5 cytosine methyltransferase, Bromo adjacent homology (BAH) domain, Chromo domain; Chromo domain, C-5 cytosine methyltransferase, Bromo adjacent homology (BAH) domain
hsd_id_Theobroma_cacao_492	XP_007014805.2; XP_007037861.2	1905; 1900	Pfam	PF02364, PF14288; PF14288, PF02364	1,3-beta-glucan synthase component, 1,3-beta-glucan synthase subunit FKS1, domain-1; 1,3-beta-glucan synthase subunit FKS1, domain-1, 1,3-beta-glucan synthase component	IPR003440, IPR026899; IPR026899, IPR003440	Glycosyl transferase, family 48, 1,3-beta-glucan synthase subunit FKS1-like, domain-1; 1,3-beta-glucan synthase subunit FKS1-like, domain-1, Glycosyl transferase, family 48
hsd_id_Theobroma_cacao_493	XP_007014814.1; XP_007014882.2; XP_017973288.1; XP_017970962.1; XP_007045907.2; XP_017979543.1; XP_017973492.1; XP_017972673.1; XP_007036679.1; XP_017977361.1; XP_017974740.1; XP_007029221.2; XP_017974101.1; XP_017972590.1; XP_007033096.2; XP_007026020.2; XP_007026017.2; XP_017978283.1; XP_007015406.2; XP_007026016.2; XP_017980516.1; XP_017978275.1	511; 517; 508; 498; 506; 509; 535; 533; 513; 487; 511; 494; 477; 518; 514; 529; 529; 511; 512; 516; 550; 511	Pfam	PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232; PF00232	Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1; Glycosyl hydrolase family 1	IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360; IPR001360	Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1; Glycoside hydrolase family 1
hsd_id_Theobroma_cacao_494	XP_007014816.2; XP_017982984.1; XP_017978978.1; XP_007048880.2; XP_017980266.1; XP_007048881.2	1948; 1957; 1917; 1929; 1989; 1891	Pfam	PF14288, PF02364, PF04652; PF02364, PF14288, PF04652; PF14288, PF02364, PF04652; PF04652, PF02364, PF14288; PF14288, PF02364, PF04652; PF14288, PF04652, PF02364	1,3-beta-glucan synthase subunit FKS1, domain-1, 1,3-beta-glucan synthase component, Vta1 like; 1,3-beta-glucan synthase component, 1,3-beta-glucan synthase subunit FKS1, domain-1, Vta1 like; 1,3-beta-glucan synthase subunit FKS1, domain-1, 1,3-beta-glucan synthase component, Vta1 like; Vta1 like, 1,3-beta-glucan synthase component, 1,3-beta-glucan synthase subunit FKS1, domain-1; 1,3-beta-glucan synthase subunit FKS1, domain-1, 1,3-beta-glucan synthase component, Vta1 like; 1,3-beta-glucan synthase subunit FKS1, domain-1, Vta1 like, 1,3-beta-glucan synthase component	IPR026899, IPR003440, IPR039431; IPR003440, IPR026899, IPR039431; IPR026899, IPR003440, IPR039431; IPR039431, IPR003440, IPR026899; IPR026899, IPR003440, IPR039431; IPR026899, IPR039431, IPR003440	1,3-beta-glucan synthase subunit FKS1-like, domain-1, Glycosyl transferase, family 48, Vta1/callose synthase, N-terminal; Glycosyl transferase, family 48, 1,3-beta-glucan synthase subunit FKS1-like, domain-1, Vta1/callose synthase, N-terminal; 1,3-beta-glucan synthase subunit FKS1-like, domain-1, Glycosyl transferase, family 48, Vta1/callose synthase, N-terminal; Vta1/callose synthase, N-terminal, Glycosyl transferase, family 48, 1,3-beta-glucan synthase subunit FKS1-like, domain-1; 1,3-beta-glucan synthase subunit FKS1-like, domain-1, Glycosyl transferase, family 48, Vta1/callose synthase, N-terminal; 1,3-beta-glucan synthase subunit FKS1-like, domain-1, Vta1/callose synthase, N-terminal, Glycosyl transferase, family 48
hsd_id_Theobroma_cacao_495	XP_007014826.2; XP_007028985.2	377; 383	Pfam	PF11960, PF00487; PF11960, PF00487	Domain of unknown function (DUF3474), Fatty acid desaturase; Domain of unknown function (DUF3474), Fatty acid desaturase	IPR021863, IPR005804; IPR021863, IPR005804	Fatty acid desaturase, N-terminal, Fatty acid desaturase domain; Fatty acid desaturase, N-terminal, Fatty acid desaturase domain
hsd_id_Theobroma_cacao_496	XP_007014829.1; XP_007046928.2; XP_017976332.1; XP_017982034.1; XP_007012845.2; XP_017983847.1; XP_017974157.1; XP_007052192.2; XP_007024273.2; XP_007034503.1; XP_007030701.1; XP_007046767.2; XP_007042041.1; XP_007051045.1; XP_017985092.1; XP_007048465.2; XP_007012149.2	255; 248; 172; 311; 302; 342; 147; 272; 319; 243; 302; 389; 322; 119; 341; 222; 363	Pfam	PF00320; PF00320; PF00320; PF00320; PF00320; PF00320; PF00320; PF00320; PF00320; PF00320; PF00320; PF00320; PF00320; PF00320; PF00320; PF00320; PF00320	GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger; GATA zinc finger	IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679; IPR000679	Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type; Zinc finger, GATA-type
hsd_id_Theobroma_cacao_497	XP_007014835.2; XP_007030917.2	361; 339	Pfam	PF02362, PF00847; PF00847, PF02362	B3 DNA binding domain, AP2 domain; AP2 domain, B3 DNA binding domain	IPR003340, IPR001471; IPR001471, IPR003340	B3 DNA binding domain, AP2/ERF domain; AP2/ERF domain, B3 DNA binding domain
hsd_id_Theobroma_cacao_498	XP_007014837.1; XP_017977451.1	392; 392	Pfam	PF13561; PF13561	Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase	-; -	-; -
hsd_id_Theobroma_cacao_499	XP_007014842.1; XP_007028977.1	391; 346	Pfam	PF08743; PF08743	Nse4 C-terminal; Nse4 C-terminal	IPR014854; IPR014854	Non-structural maintenance of chromosome element 4, C-terminal; Non-structural maintenance of chromosome element 4, C-terminal
hsd_id_Theobroma_cacao_500	XP_007014847.1; XP_007052608.2; XP_017976905.1	453; 436; 392	Pfam	PF03735; PF03735; PF03735	ENT domain; ENT domain; ENT domain	IPR005491; IPR005491; IPR005491	ENT domain; ENT domain; ENT domain
hsd_id_Theobroma_cacao_501	XP_007014877.1; XP_007028955.2	137; 137	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_502	XP_007014901.2; XP_017976599.1; XP_017976598.1; XP_017974339.1; XP_017981970.1	771; 776; 796; 768; 777	Pfam	PF00168, PF08372; PF08372, PF00168; PF00168, PF08372; PF08372, PF00168; PF00168, PF08372	C2 domain, Plant phosphoribosyltransferase C-terminal; Plant phosphoribosyltransferase C-terminal, C2 domain; C2 domain, Plant phosphoribosyltransferase C-terminal; Plant phosphoribosyltransferase C-terminal, C2 domain; C2 domain, Plant phosphoribosyltransferase C-terminal	IPR000008, IPR013583; IPR013583, IPR000008; IPR000008, IPR013583; IPR013583, IPR000008; IPR000008, IPR013583	C2 domain, Phosphoribosyltransferase C-terminal; Phosphoribosyltransferase C-terminal, C2 domain; C2 domain, Phosphoribosyltransferase C-terminal; Phosphoribosyltransferase C-terminal, C2 domain; C2 domain, Phosphoribosyltransferase C-terminal
hsd_id_Theobroma_cacao_503	XP_007014942.2; XP_007014937.1; XP_017981975.1; XP_007047838.1; XP_017980785.1; XP_007047866.1; XP_007018714.1; XP_017984478.1	136; 136; 136; 136; 136; 136; 136; 136	Pfam	PF00125; PF00125; PF00125; PF00125; PF00125; PF00125; PF00125; PF00125	Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4; Core histone H2A/H2B/H3/H4	IPR007125; IPR007125; IPR007125; IPR007125; IPR007125; IPR007125; IPR007125; IPR007125	Histone H2A/H2B/H3; Histone H2A/H2B/H3; Histone H2A/H2B/H3; Histone H2A/H2B/H3; Histone H2A/H2B/H3; Histone H2A/H2B/H3; Histone H2A/H2B/H3; Histone H2A/H2B/H3
hsd_id_Theobroma_cacao_504	XP_007014975.1; XP_007028889.2; XP_007052555.1	171; 172; 167	Pfam	PF01754, PF01428; PF01428, PF01754; PF01428, PF01754	A20-like zinc finger, AN1-like Zinc finger; AN1-like Zinc finger, A20-like zinc finger; AN1-like Zinc finger, A20-like zinc finger	IPR002653, IPR000058; IPR000058, IPR002653; IPR000058, IPR002653	Zinc finger, A20-type, Zinc finger, AN1-type; Zinc finger, AN1-type, Zinc finger, A20-type; Zinc finger, AN1-type, Zinc finger, A20-type
hsd_id_Theobroma_cacao_505	XP_007014991.2; XP_007040200.2; XP_017971573.1	991; 988; 1006	Pfam	PF00403, PF00122, PF00702; PF00122, PF00702, PF00403; PF00403, PF00122, PF00702	Heavy-metal-associated domain, E1-E2 ATPase, haloacid dehalogenase-like hydrolase; E1-E2 ATPase, haloacid dehalogenase-like hydrolase, Heavy-metal-associated domain; Heavy-metal-associated domain, E1-E2 ATPase, haloacid dehalogenase-like hydrolase	IPR006121, -, -; -, -, IPR006121; IPR006121, -, -	Heavy metal-associated domain, HMA, -, -; -, -, Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA, -, -
hsd_id_Theobroma_cacao_506	XP_007015031.2; XP_017977549.1	379; 387	Pfam	PF16076, PF01553; PF01553, PF16076	Acyltransferase C-terminus, Acyltransferase; Acyltransferase, Acyltransferase C-terminus	IPR032098, IPR002123; IPR002123, IPR032098	Acyltransferase, C-terminal domain, Phospholipid/glycerol acyltransferase; Phospholipid/glycerol acyltransferase, Acyltransferase, C-terminal domain
hsd_id_Theobroma_cacao_507	XP_007015034.2; XP_007020874.2; XP_007017329.2; XP_007026047.1; XP_007042377.2	423; 417; 435; 421; 436	Pfam	PF00076; PF00076; PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_508	XP_007015050.2; XP_007028476.1	250; 233	Pfam	PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_509	XP_007015052.2; XP_007052531.2; XP_017977215.1	708; 734; 727	Pfam	PF00642, PF12796; PF00642, PF12796; PF00642, PF12796	Zinc finger C-x8-C-x5-C-x3-H type (and similar), Ankyrin repeats (3 copies); Zinc finger C-x8-C-x5-C-x3-H type (and similar), Ankyrin repeats (3 copies); Zinc finger C-x8-C-x5-C-x3-H type (and similar), Ankyrin repeats (3 copies)	IPR000571, IPR020683; IPR000571, IPR020683; IPR000571, IPR020683	Zinc finger, CCCH-type, Ankyrin repeat-containing domain; Zinc finger, CCCH-type, Ankyrin repeat-containing domain; Zinc finger, CCCH-type, Ankyrin repeat-containing domain
hsd_id_Theobroma_cacao_510	XP_007015061.2; XP_007028687.1	260; 264	Pfam	PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_511	XP_007015062.1; XP_007028816.1	131; 124	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_512	XP_007015077.1; XP_007015080.2	268; 269	Pfam	PF00333, PF03719; PF00333, PF03719	Ribosomal protein S5, N-terminal domain, Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, N-terminal domain, Ribosomal protein S5, C-terminal domain	IPR013810, IPR005324; IPR013810, IPR005324	Ribosomal protein S5, N-terminal, Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal, Ribosomal protein S5, C-terminal
hsd_id_Theobroma_cacao_513	XP_007015091.2; XP_007029632.2; XP_007029628.1; XP_017974404.1; XP_007023416.2	325; 324; 324; 325; 336	Pfam	PF01370; PF01370; PF01370; PF01370; PF01370	NAD dependent epimerase/dehydratase family; NAD dependent epimerase/dehydratase family; NAD dependent epimerase/dehydratase family; NAD dependent epimerase/dehydratase family; NAD dependent epimerase/dehydratase family	IPR001509; IPR001509; IPR001509; IPR001509; IPR001509	NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase
hsd_id_Theobroma_cacao_514	XP_007015095.2; XP_007050417.2; XP_007034959.2	508; 516; 500	Pfam	PF01764; PF01764; PF01764	Lipase (class 3); Lipase (class 3); Lipase (class 3)	IPR002921; IPR002921; IPR002921	Fungal lipase-like domain; Fungal lipase-like domain; Fungal lipase-like domain
hsd_id_Theobroma_cacao_515	XP_007015099.1; XP_007052470.2	392; 387	Pfam	PF11891; PF11891	Protein RETICULATA-related; Protein RETICULATA-related	IPR021825; IPR021825	Protein RETICULATA-related; Protein RETICULATA-related
hsd_id_Theobroma_cacao_516	XP_007015119.2; XP_007015141.2; XP_017975436.1; XP_007028622.2; XP_017976333.1; XP_017972641.1	339; 345; 396; 347; 344; 341	Pfam	PF00332; PF00332; PF00332; PF00332; PF00332; PF00332	Glycosyl hydrolases family 17; Glycosyl hydrolases family 17; Glycosyl hydrolases family 17; Glycosyl hydrolases family 17; Glycosyl hydrolases family 17; Glycosyl hydrolases family 17	IPR000490; IPR000490; IPR000490; IPR000490; IPR000490; IPR000490	Glycoside hydrolase family 17; Glycoside hydrolase family 17; Glycoside hydrolase family 17; Glycoside hydrolase family 17; Glycoside hydrolase family 17; Glycoside hydrolase family 17
hsd_id_Theobroma_cacao_517	XP_007015120.2; XP_007028688.1	312; 312	Pfam	PF00382, PF08271; PF00382, PF08271	Transcription factor TFIIB repeat, TFIIB zinc-binding; Transcription factor TFIIB repeat, TFIIB zinc-binding	IPR013150, IPR013137; IPR013150, IPR013137	Transcription factor TFIIB, cyclin-like domain, Zinc finger, TFIIB-type; Transcription factor TFIIB, cyclin-like domain, Zinc finger, TFIIB-type
hsd_id_Theobroma_cacao_518	XP_007015153.2; XP_017984686.1	178; 191	Pfam	PF00179; PF00179	Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme	IPR000608; IPR000608	Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2
hsd_id_Theobroma_cacao_519	XP_007015182.2; XP_017982378.1	305; 229	Pfam	PF03181; PF03181	BURP domain; BURP domain	IPR004873; IPR004873	BURP domain; BURP domain
hsd_id_Theobroma_cacao_520	XP_007015187.2; XP_017984095.1	470; 483	Pfam	PF03514; PF03514	GRAS domain family; GRAS domain family	IPR005202; IPR005202	Transcription factor GRAS; Transcription factor GRAS
hsd_id_Theobroma_cacao_521	XP_007015210.2; XP_017972157.1; XP_017972165.1; XP_017979616.1; XP_017969721.1; XP_007042140.2; XP_007017600.2; XP_007017597.2; XP_017977898.1	378; 366; 403; 363; 363; 369; 373; 373; 364	Pfam	PF03492; PF03492; PF03492; PF03492; PF03492; PF03492; PF03492; PF03492; PF03492	SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase	IPR005299; IPR005299; IPR005299; IPR005299; IPR005299; IPR005299; IPR005299; IPR005299; IPR005299	SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase
hsd_id_Theobroma_cacao_522	XP_007015218.2; XP_007028543.2	166; 167	Pfam	PF14853, PF14852; PF14853, PF14852	Fis1 C-terminal tetratricopeptide repeat, Fis1 N-terminal tetratricopeptide repeat; Fis1 C-terminal tetratricopeptide repeat, Fis1 N-terminal tetratricopeptide repeat	IPR028061, IPR028058; IPR028061, IPR028058	Fis1, C-terminal tetratricopeptide repeat, Fis1, N-terminal tetratricopeptide repeat; Fis1, C-terminal tetratricopeptide repeat, Fis1, N-terminal tetratricopeptide repeat
hsd_id_Theobroma_cacao_523	XP_007015223.2; XP_017984838.1; XP_007018794.2; XP_017983443.1	313; 314; 316; 316	Pfam	PF00191; PF00191; PF00191; PF00191	Annexin; Annexin; Annexin; Annexin	IPR018502; IPR018502; IPR018502; IPR018502	Annexin repeat; Annexin repeat; Annexin repeat; Annexin repeat
hsd_id_Theobroma_cacao_524	XP_007015227.1; XP_017977557.1	433; 394	Pfam	PF00682; PF00682	HMGL-like; HMGL-like	IPR000891; IPR000891	Pyruvate carboxyltransferase; Pyruvate carboxyltransferase
hsd_id_Theobroma_cacao_525	XP_007015245.2; XP_017977542.1	398; 395	Pfam	PF00646; PF00646	F-box domain; F-box domain	IPR001810; IPR001810	F-box domain; F-box domain
hsd_id_Theobroma_cacao_526	XP_007015253.1; XP_007040387.2; XP_007020820.2; XP_017977403.1; XP_017982809.1; XP_007028795.1; XP_007034055.2	535; 531; 536; 527; 532; 533; 537	Pfam	PF13499, PF00069; PF13499, PF00069; PF13499, PF00069; PF00069, PF13499; PF13499, PF00069; PF00069, PF13499; PF00069, PF13499	EF-hand domain pair, Protein kinase domain; EF-hand domain pair, Protein kinase domain; EF-hand domain pair, Protein kinase domain; Protein kinase domain, EF-hand domain pair; EF-hand domain pair, Protein kinase domain; Protein kinase domain, EF-hand domain pair; Protein kinase domain, EF-hand domain pair	IPR002048, IPR000719; IPR002048, IPR000719; IPR002048, IPR000719; IPR000719, IPR002048; IPR002048, IPR000719; IPR000719, IPR002048; IPR000719, IPR002048	EF-hand domain, Protein kinase domain; EF-hand domain, Protein kinase domain; EF-hand domain, Protein kinase domain; Protein kinase domain, EF-hand domain; EF-hand domain, Protein kinase domain; Protein kinase domain, EF-hand domain; Protein kinase domain, EF-hand domain
hsd_id_Theobroma_cacao_527	XP_007015255.2; XP_007037548.1	508; 507	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_528	XP_007015340.2; XP_007028252.2; XP_017970207.1; XP_007018030.2; XP_007046526.2	416; 471; 431; 435; 438	Pfam	PF02984, PF00134; PF02984, PF00134; PF02984, PF00134; PF00134, PF02984; PF00134, PF02984	Cyclin, C-terminal domain, Cyclin, N-terminal domain; Cyclin, C-terminal domain, Cyclin, N-terminal domain; Cyclin, C-terminal domain, Cyclin, N-terminal domain; Cyclin, N-terminal domain, Cyclin, C-terminal domain; Cyclin, N-terminal domain, Cyclin, C-terminal domain	IPR004367, IPR006671; IPR004367, IPR006671; IPR004367, IPR006671; IPR006671, IPR004367; IPR006671, IPR004367	Cyclin, C-terminal domain, Cyclin, N-terminal; Cyclin, C-terminal domain, Cyclin, N-terminal; Cyclin, C-terminal domain, Cyclin, N-terminal; Cyclin, N-terminal, Cyclin, C-terminal domain; Cyclin, N-terminal, Cyclin, C-terminal domain
hsd_id_Theobroma_cacao_529	XP_007015342.2; XP_007035641.2; XP_017977010.1; XP_007050977.1	320; 392; 317; 316	Pfam	PF00561; PF00561; PF00561; PF00561	alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR000073; IPR000073; IPR000073; IPR000073	Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1
hsd_id_Theobroma_cacao_530	XP_007015344.1; XP_017984059.1	239; 213	Pfam	PF09753; PF09753	Membrane fusion protein Use1; Membrane fusion protein Use1	IPR019150; IPR019150	Vesicle transport protein, Use1; Vesicle transport protein, Use1
hsd_id_Theobroma_cacao_531	XP_007015354.2; XP_007028248.2	494; 492	Pfam	PF16711, PF16709, PF16712, PF17684; PF17684, PF16711, PF16709, PF16712	Actin-binding domain of plant-specific actin-binding protein, Ig domain of plant-specific actin-binding protein, Coiled-coil regions of plant-specific actin-binding protein, PH domain of plant-specific actin-binding protein; PH domain of plant-specific actin-binding protein, Actin-binding domain of plant-specific actin-binding protein, Ig domain of plant-specific actin-binding protein, Coiled-coil regions of plant-specific actin-binding protein	IPR032012, -, IPR032009, IPR041144; IPR041144, IPR032012, -, IPR032009	Stomatal closure-related actin-binding protein, actin-binding domain, -, Stomatal closure-related actin-binding protein, coiled-coil domain, Stomatal closure-related actin-binding protein, PH domain; Stomatal closure-related actin-binding protein, PH domain, Stomatal closure-related actin-binding protein, actin-binding domain, -, Stomatal closure-related actin-binding protein, coiled-coil domain
hsd_id_Theobroma_cacao_532	XP_007015367.1; XP_007015369.2; XP_007028241.2; XP_007017809.1; XP_007038700.1; XP_007026823.2; XP_007040195.1; XP_007016239.1; XP_007036799.1; XP_007022910.1; XP_007040224.1	447; 449; 446; 451; 448; 444; 445; 444; 445; 446; 444	Pfam	PF03953, PF00091; PF00091, PF03953; PF03953, PF00091; PF00091, PF03953; PF00091, PF03953; PF03953, PF00091; PF00091, PF03953; PF00091, PF03953; PF03953, PF00091; PF03953, PF00091; PF00091, PF03953	Tubulin C-terminal domain, Tubulin/FtsZ family, GTPase domain; Tubulin/FtsZ family, GTPase domain, Tubulin C-terminal domain; Tubulin C-terminal domain, Tubulin/FtsZ family, GTPase domain; Tubulin/FtsZ family, GTPase domain, Tubulin C-terminal domain; Tubulin/FtsZ family, GTPase domain, Tubulin C-terminal domain; Tubulin C-terminal domain, Tubulin/FtsZ family, GTPase domain; Tubulin/FtsZ family, GTPase domain, Tubulin C-terminal domain; Tubulin/FtsZ family, GTPase domain, Tubulin C-terminal domain; Tubulin C-terminal domain, Tubulin/FtsZ family, GTPase domain; Tubulin C-terminal domain, Tubulin/FtsZ family, GTPase domain; Tubulin/FtsZ family, GTPase domain, Tubulin C-terminal domain	IPR018316, IPR003008; IPR003008, IPR018316; IPR018316, IPR003008; IPR003008, IPR018316; IPR003008, IPR018316; IPR018316, IPR003008; IPR003008, IPR018316; IPR003008, IPR018316; IPR018316, IPR003008; IPR018316, IPR003008; IPR003008, IPR018316	Tubulin/FtsZ, 2-layer sandwich domain, Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, GTPase domain, Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ, 2-layer sandwich domain, Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, GTPase domain, Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ, GTPase domain, Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ, 2-layer sandwich domain, Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, GTPase domain, Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ, GTPase domain, Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ, 2-layer sandwich domain, Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain, Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, GTPase domain, Tubulin/FtsZ, 2-layer sandwich domain
hsd_id_Theobroma_cacao_533	XP_007015380.2; XP_007045151.2	97; 97	Pfam	PF00166; PF00166	Chaperonin 10 Kd subunit; Chaperonin 10 Kd subunit	IPR020818; IPR020818	GroES chaperonin family; GroES chaperonin family
hsd_id_Theobroma_cacao_534	XP_007015382.1; XP_007015404.2	249; 249	Pfam	PF10584, PF00227; PF00227, PF10584	Proteasome subunit A N-terminal signature, Proteasome subunit; Proteasome subunit, Proteasome subunit A N-terminal signature	IPR000426, IPR001353; IPR001353, IPR000426	Proteasome alpha-subunit, N-terminal domain, Proteasome, subunit alpha/beta; Proteasome, subunit alpha/beta, Proteasome alpha-subunit, N-terminal domain
hsd_id_Theobroma_cacao_535	XP_007015414.2; XP_007037956.2	221; 231	Pfam	PF00736; PF00736	EF-1 guanine nucleotide exchange domain; EF-1 guanine nucleotide exchange domain	IPR014038; IPR014038	Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domain; Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domain
hsd_id_Theobroma_cacao_536	XP_007015416.2; XP_017984637.1	406; 360	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_537	XP_007015418.2; XP_007015420.2	360; 342	Pfam	PF06830; PF06830	Root cap; Root cap	IPR009646; IPR009646	Root cap; Root cap
hsd_id_Theobroma_cacao_538	XP_007015421.2; XP_007025758.2; XP_017983039.1; XP_017985209.1; XP_017978939.1; XP_007046794.2; XP_017972339.1; XP_007022965.2	845; 843; 839; 847; 843; 854; 831; 823	Pfam	PF01301, PF17834, PF02140; PF01301, PF02140, PF17834; PF01301, PF02140, PF17834; PF02140, PF01301, PF17834; PF01301, PF17834, PF02140; PF01301, PF17834, PF02140; PF17834, PF02140, PF01301; PF01301, PF17834, PF02140	Glycosyl hydrolases family 35, Beta-sandwich domain in beta galactosidase, Galactose binding lectin domain; Glycosyl hydrolases family 35, Galactose binding lectin domain, Beta-sandwich domain in beta galactosidase; Glycosyl hydrolases family 35, Galactose binding lectin domain, Beta-sandwich domain in beta galactosidase; Galactose binding lectin domain, Glycosyl hydrolases family 35, Beta-sandwich domain in beta galactosidase; Glycosyl hydrolases family 35, Beta-sandwich domain in beta galactosidase, Galactose binding lectin domain; Glycosyl hydrolases family 35, Beta-sandwich domain in beta galactosidase, Galactose binding lectin domain; Beta-sandwich domain in beta galactosidase, Galactose binding lectin domain, Glycosyl hydrolases family 35; Glycosyl hydrolases family 35, Beta-sandwich domain in beta galactosidase, Galactose binding lectin domain	IPR031330, IPR041392, IPR000922; IPR031330, IPR000922, IPR041392; IPR031330, IPR000922, IPR041392; IPR000922, IPR031330, IPR041392; IPR031330, IPR041392, IPR000922; IPR031330, IPR041392, IPR000922; IPR041392, IPR000922, IPR031330; IPR031330, IPR041392, IPR000922	Glycoside hydrolase 35, catalytic domain, Beta-galactosidase, beta-sandwich domain, D-galactoside/L-rhamnose binding SUEL lectin domain; Glycoside hydrolase 35, catalytic domain, D-galactoside/L-rhamnose binding SUEL lectin domain, Beta-galactosidase, beta-sandwich domain; Glycoside hydrolase 35, catalytic domain, D-galactoside/L-rhamnose binding SUEL lectin domain, Beta-galactosidase, beta-sandwich domain; D-galactoside/L-rhamnose binding SUEL lectin domain, Glycoside hydrolase 35, catalytic domain, Beta-galactosidase, beta-sandwich domain; Glycoside hydrolase 35, catalytic domain, Beta-galactosidase, beta-sandwich domain, D-galactoside/L-rhamnose binding SUEL lectin domain; Glycoside hydrolase 35, catalytic domain, Beta-galactosidase, beta-sandwich domain, D-galactoside/L-rhamnose binding SUEL lectin domain; Beta-galactosidase, beta-sandwich domain, D-galactoside/L-rhamnose binding SUEL lectin domain, Glycoside hydrolase 35, catalytic domain; Glycoside hydrolase 35, catalytic domain, Beta-galactosidase, beta-sandwich domain, D-galactoside/L-rhamnose binding SUEL lectin domain
hsd_id_Theobroma_cacao_539	XP_007015428.2; XP_007027300.2	249; 247	Pfam	PF02469; PF02469	Fasciclin domain; Fasciclin domain	IPR000782; IPR000782	FAS1 domain; FAS1 domain
hsd_id_Theobroma_cacao_540	XP_007015434.2; XP_017980629.1; XP_007033775.2; XP_007032565.2	107; 81; 81; 81	Pfam	PF03911; PF03911; PF03911; PF03911	Sec61beta family; Sec61beta family; Sec61beta family; Sec61beta family	IPR016482; IPR016482; IPR016482; IPR016482	Protein transport protein SecG/Sec61-beta/Sbh; Protein transport protein SecG/Sec61-beta/Sbh; Protein transport protein SecG/Sec61-beta/Sbh; Protein transport protein SecG/Sec61-beta/Sbh
hsd_id_Theobroma_cacao_541	XP_007015441.2; XP_017973154.1; XP_017975077.1; XP_017971698.1; XP_017982694.1; XP_007024963.1; XP_007050773.2; XP_017981253.1; XP_007040576.2; XP_017969437.1; XP_017978970.1	800; 856; 838; 816; 917; 902; 755; 951; 698; 705; 671	Pfam	PF02309, PF06507, PF02362; PF06507, PF02309, PF02362; PF06507, PF02362, PF02309; PF02362, PF06507, PF02309; PF02309, PF02362, PF06507; PF02362, PF06507, PF02309; PF02362, PF02309, PF06507; PF02362, PF06507, PF02309; PF06507, PF02309, PF02362; PF06507, PF02309, PF02362; PF06507, PF02362, PF02309	AUX/IAA family, Auxin response factor, B3 DNA binding domain; Auxin response factor, AUX/IAA family, B3 DNA binding domain; Auxin response factor, B3 DNA binding domain, AUX/IAA family; B3 DNA binding domain, Auxin response factor, AUX/IAA family; AUX/IAA family, B3 DNA binding domain, Auxin response factor; B3 DNA binding domain, Auxin response factor, AUX/IAA family; B3 DNA binding domain, AUX/IAA family, Auxin response factor; B3 DNA binding domain, Auxin response factor, AUX/IAA family; Auxin response factor, AUX/IAA family, B3 DNA binding domain; Auxin response factor, AUX/IAA family, B3 DNA binding domain; Auxin response factor, B3 DNA binding domain, AUX/IAA family	IPR033389, IPR010525, IPR003340; IPR010525, IPR033389, IPR003340; IPR010525, IPR003340, IPR033389; IPR003340, IPR010525, IPR033389; IPR033389, IPR003340, IPR010525; IPR003340, IPR010525, IPR033389; IPR003340, IPR033389, IPR010525; IPR003340, IPR010525, IPR033389; IPR010525, IPR033389, IPR003340; IPR010525, IPR033389, IPR003340; IPR010525, IPR003340, IPR033389	AUX/IAA domain, Auxin response factor domain, B3 DNA binding domain; Auxin response factor domain, AUX/IAA domain, B3 DNA binding domain; Auxin response factor domain, B3 DNA binding domain, AUX/IAA domain; B3 DNA binding domain, Auxin response factor domain, AUX/IAA domain; AUX/IAA domain, B3 DNA binding domain, Auxin response factor domain; B3 DNA binding domain, Auxin response factor domain, AUX/IAA domain; B3 DNA binding domain, AUX/IAA domain, Auxin response factor domain; B3 DNA binding domain, Auxin response factor domain, AUX/IAA domain; Auxin response factor domain, AUX/IAA domain, B3 DNA binding domain; Auxin response factor domain, AUX/IAA domain, B3 DNA binding domain; Auxin response factor domain, B3 DNA binding domain, AUX/IAA domain
hsd_id_Theobroma_cacao_542	XP_007015482.2; XP_017982918.1	547; 575	Pfam	PF13456, PF01485; PF01485, PF13456	Reverse transcriptase-like, IBR domain, a half RING-finger domain; IBR domain, a half RING-finger domain, Reverse transcriptase-like	IPR002156, IPR002867; IPR002867, IPR002156	Ribonuclease H domain, IBR domain; IBR domain, Ribonuclease H domain
hsd_id_Theobroma_cacao_543	XP_007015496.2; XP_007027253.2	624; 619	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_544	XP_007015536.1; XP_007029995.1; XP_017983235.1; XP_017984993.1; XP_007034571.1	407; 423; 406; 402; 410	Pfam	PF00651; PF00651; PF00651; PF00651; PF00651	BTB/POZ domain; BTB/POZ domain; BTB/POZ domain; BTB/POZ domain; BTB/POZ domain	IPR000210; IPR000210; IPR000210; IPR000210; IPR000210	BTB/POZ domain; BTB/POZ domain; BTB/POZ domain; BTB/POZ domain; BTB/POZ domain
hsd_id_Theobroma_cacao_545	XP_007015561.2; XP_007030023.2	821; 765	Pfam	PF01717, PF08267; PF08267, PF01717	Cobalamin-independent synthase, Catalytic domain, Cobalamin-independent synthase, N-terminal domain; Cobalamin-independent synthase, N-terminal domain, Cobalamin-independent synthase, Catalytic domain	IPR002629, IPR013215; IPR013215, IPR002629	Cobalamin-independent methionine synthase MetE, C-terminal/archaeal, Cobalamin-independent methionine synthase MetE, N-terminal; Cobalamin-independent methionine synthase MetE, N-terminal, Cobalamin-independent methionine synthase MetE, C-terminal/archaeal
hsd_id_Theobroma_cacao_546	XP_007015571.2; XP_007015576.2; XP_017982888.1; XP_017982895.1	1367; 1368; 1368; 1365	Pfam	PF02738, PF00111, PF00941, PF01799, PF03450, PF01315; PF02738, PF01799, PF03450, PF00941, PF01315, PF00111; PF00941, PF03450, PF01799, PF02738, PF01315, PF00111; PF00941, PF00111, PF02738, PF01799, PF01315, PF03450	Molybdopterin-binding domain of aldehyde dehydrogenase, 2Fe-2S iron-sulfur cluster binding domain, FAD binding domain in molybdopterin dehydrogenase, [2Fe-2S] binding domain, CO dehydrogenase flavoprotein C-terminal domain, Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Molybdopterin-binding domain of aldehyde dehydrogenase, [2Fe-2S] binding domain, CO dehydrogenase flavoprotein C-terminal domain, FAD binding domain in molybdopterin dehydrogenase, Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain, 2Fe-2S iron-sulfur cluster binding domain; FAD binding domain in molybdopterin dehydrogenase, CO dehydrogenase flavoprotein C-terminal domain, [2Fe-2S] binding domain, Molybdopterin-binding domain of aldehyde dehydrogenase, Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain, 2Fe-2S iron-sulfur cluster binding domain; FAD binding domain in molybdopterin dehydrogenase, 2Fe-2S iron-sulfur cluster binding domain, Molybdopterin-binding domain of aldehyde dehydrogenase, [2Fe-2S] binding domain, Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain, CO dehydrogenase flavoprotein C-terminal domain	IPR008274, IPR001041, IPR002346, IPR002888, IPR005107, IPR000674; IPR008274, IPR002888, IPR005107, IPR002346, IPR000674, IPR001041; IPR002346, IPR005107, IPR002888, IPR008274, IPR000674, IPR001041; IPR002346, IPR001041, IPR008274, IPR002888, IPR000674, IPR005107	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding, 2Fe-2S ferredoxin-type iron-sulfur binding domain, Molybdopterin dehydrogenase, FAD-binding, [2Fe-2S]-binding, CO dehydrogenase flavoprotein, C-terminal, Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding, [2Fe-2S]-binding, CO dehydrogenase flavoprotein, C-terminal, Molybdopterin dehydrogenase, FAD-binding, Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead, 2Fe-2S ferredoxin-type iron-sulfur binding domain; Molybdopterin dehydrogenase, FAD-binding, CO dehydrogenase flavoprotein, C-terminal, [2Fe-2S]-binding, Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding, Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead, 2Fe-2S ferredoxin-type iron-sulfur binding domain; Molybdopterin dehydrogenase, FAD-binding, 2Fe-2S ferredoxin-type iron-sulfur binding domain, Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding, [2Fe-2S]-binding, Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead, CO dehydrogenase flavoprotein, C-terminal
hsd_id_Theobroma_cacao_547	XP_007015604.2; XP_007028022.2	892; 943	Pfam	PF00443; PF00443	Ubiquitin carboxyl-terminal hydrolase; Ubiquitin carboxyl-terminal hydrolase	IPR001394; IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase; Peptidase C19, ubiquitin carboxyl-terminal hydrolase
hsd_id_Theobroma_cacao_548	XP_007015607.1; XP_017981942.1; XP_007052113.2; XP_007039924.1; XP_017979558.1; XP_017970074.1	182; 217; 212; 211; 181; 222	Pfam	PF04690; PF04690; PF04690; PF04690; PF04690; PF04690	YABBY protein; YABBY protein; YABBY protein; YABBY protein; YABBY protein; YABBY protein	IPR006780; IPR006780; IPR006780; IPR006780; IPR006780; IPR006780	YABBY protein; YABBY protein; YABBY protein; YABBY protein; YABBY protein; YABBY protein
hsd_id_Theobroma_cacao_549	XP_007015610.2; XP_017982527.1; XP_017982308.1	310; 310; 310	Pfam	PF12776; PF12776; PF12776	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR024752; IPR024752; IPR024752	Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain
hsd_id_Theobroma_cacao_550	XP_007015623.2; XP_007023695.1; XP_017982919.1; XP_017973094.1; XP_017973215.1; XP_007040843.2	579; 559; 574; 606; 631; 552	Pfam	PF03055; PF03055; PF03055; PF03055; PF03055; PF03055	Retinal pigment epithelial membrane protein; Retinal pigment epithelial membrane protein; Retinal pigment epithelial membrane protein; Retinal pigment epithelial membrane protein; Retinal pigment epithelial membrane protein; Retinal pigment epithelial membrane protein	IPR004294; IPR004294; IPR004294; IPR004294; IPR004294; IPR004294	Carotenoid oxygenase; Carotenoid oxygenase; Carotenoid oxygenase; Carotenoid oxygenase; Carotenoid oxygenase; Carotenoid oxygenase
hsd_id_Theobroma_cacao_551	XP_007015630.2; XP_007029163.2; XP_007031033.2	331; 326; 324	Pfam	PF07859; PF07859; PF07859	alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR013094; IPR013094; IPR013094	Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3
hsd_id_Theobroma_cacao_552	XP_007015648.1; XP_007028015.1; XP_017971465.1	247; 243; 335	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_553	XP_007015679.2; XP_017982923.1; XP_017982400.1; XP_017982402.1; XP_017982403.1; XP_007027980.2; XP_017982404.1	462; 484; 460; 457; 464; 491; 451	Pfam	PF11744; PF11744; PF11744; PF11744; PF11744; PF11744; PF11744	Aluminium activated malate transporter; Aluminium activated malate transporter; Aluminium activated malate transporter; Aluminium activated malate transporter; Aluminium activated malate transporter; Aluminium activated malate transporter; Aluminium activated malate transporter	IPR020966; IPR020966; IPR020966; IPR020966; IPR020966; IPR020966; IPR020966	Aluminum-activated malate transporter; Aluminum-activated malate transporter; Aluminum-activated malate transporter; Aluminum-activated malate transporter; Aluminum-activated malate transporter; Aluminum-activated malate transporter; Aluminum-activated malate transporter
hsd_id_Theobroma_cacao_554	XP_007015701.2; XP_017982941.1	443; 441	Pfam	PF05291; PF05291	Bystin; Bystin	IPR007955; IPR007955	Bystin; Bystin
hsd_id_Theobroma_cacao_555	XP_007015731.2; XP_017976134.1	108; 108	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_556	XP_007015739.1; XP_007018504.2; XP_017983062.1	645; 591; 609	Pfam	PF00390, PF03949; PF00390, PF03949; PF03949, PF00390	Malic enzyme, N-terminal domain, Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain, Malic enzyme, NAD binding domain; Malic enzyme, NAD binding domain, Malic enzyme, N-terminal domain	IPR012301, IPR012302; IPR012301, IPR012302; IPR012302, IPR012301	Malic enzyme, N-terminal domain, Malic enzyme, NAD-binding; Malic enzyme, N-terminal domain, Malic enzyme, NAD-binding; Malic enzyme, NAD-binding, Malic enzyme, N-terminal domain
hsd_id_Theobroma_cacao_557	XP_007015764.2; XP_007027844.2; XP_007032593.2; XP_017971720.1	207; 200; 187; 220	Pfam	PF04535; PF04535; PF04535; PF04535	Domain of unknown function (DUF588); Domain of unknown function (DUF588); Domain of unknown function (DUF588); Domain of unknown function (DUF588)	IPR006702; IPR006702; IPR006702; IPR006702	Casparian strip membrane protein domain; Casparian strip membrane protein domain; Casparian strip membrane protein domain; Casparian strip membrane protein domain
hsd_id_Theobroma_cacao_558	XP_007015765.1; XP_007027840.2	420; 420	Pfam	PF06258; PF06258	Mitochondrial fission ELM1; Mitochondrial fission ELM1	IPR009367; IPR009367	Mitochondrial fission protein ELM1-like; Mitochondrial fission protein ELM1-like
hsd_id_Theobroma_cacao_559	XP_007015766.2; XP_007028557.2	496; 505	Pfam	PF05834; PF05834	Lycopene cyclase protein; Lycopene cyclase protein	-; -	-; -
hsd_id_Theobroma_cacao_560	XP_007015768.1; XP_017983145.1; XP_017983591.1	220; 220; 222	Pfam	PF13774, PF00957; PF00957, PF13774; PF00957, PF13774	Regulated-SNARE-like domain, Synaptobrevin; Synaptobrevin, Regulated-SNARE-like domain; Synaptobrevin, Regulated-SNARE-like domain	IPR010908, IPR001388; IPR001388, IPR010908; IPR001388, IPR010908	Longin domain, Synaptobrevin; Synaptobrevin, Longin domain; Synaptobrevin, Longin domain
hsd_id_Theobroma_cacao_561	XP_007015771.2; XP_007027830.2; XP_007027833.2	242; 260; 255	Pfam	PF02365; PF02365; PF02365	No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein	IPR003441; IPR003441; IPR003441	NAC domain; NAC domain; NAC domain
hsd_id_Theobroma_cacao_562	XP_007015778.1; XP_007027813.1	150; 150	Pfam	PF00411; PF00411	Ribosomal protein S11; Ribosomal protein S11	IPR001971; IPR001971	Ribosomal protein S11; Ribosomal protein S11
hsd_id_Theobroma_cacao_563	XP_007015782.2; XP_007029941.2	332; 325	Pfam	PF00141; PF00141	Peroxidase; Peroxidase	IPR002016; IPR002016	Haem peroxidase; Haem peroxidase
hsd_id_Theobroma_cacao_564	XP_007015794.1; XP_007042145.1	108; 108	Pfam	PF03297; PF03297	S25 ribosomal protein; S25 ribosomal protein	IPR004977; IPR004977	Ribosomal protein S25; Ribosomal protein S25
hsd_id_Theobroma_cacao_565	XP_007015802.1; XP_007027764.2; XP_017985056.1	480; 469; 479	Pfam	PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_566	XP_007015820.1; XP_007027739.2	216; 216	Pfam	PF00687; PF00687	Ribosomal protein L1p/L10e family; Ribosomal protein L1p/L10e family	IPR028364; IPR028364	Ribosomal protein L1/ribosomal biogenesis protein; Ribosomal protein L1/ribosomal biogenesis protein
hsd_id_Theobroma_cacao_567	XP_007015822.2; XP_017977266.1; XP_017980594.1	484; 483; 413	Pfam	PF00091, PF12327; PF12327, PF00091; PF12327, PF00091	Tubulin/FtsZ family, GTPase domain, FtsZ family, C-terminal domain; FtsZ family, C-terminal domain, Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain, Tubulin/FtsZ family, GTPase domain	IPR003008, IPR024757; IPR024757, IPR003008; IPR024757, IPR003008	Tubulin/FtsZ, GTPase domain, Cell division protein FtsZ, C-terminal; Cell division protein FtsZ, C-terminal, Tubulin/FtsZ, GTPase domain; Cell division protein FtsZ, C-terminal, Tubulin/FtsZ, GTPase domain
hsd_id_Theobroma_cacao_568	XP_007015849.1; XP_007027716.1; XP_017973069.1; XP_007028083.1; XP_017972435.1; XP_017978764.1; XP_017978351.1	174; 172; 173; 174; 172; 175; 149	Pfam	PF01161; PF01161; PF01161; PF01161; PF01161; PF01161; PF01161	Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein	IPR008914; IPR008914; IPR008914; IPR008914; IPR008914; IPR008914; IPR008914	Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein; Phosphatidylethanolamine-binding protein
hsd_id_Theobroma_cacao_569	XP_007015853.2; XP_017977936.1; XP_007040022.1	163; 165; 173	Pfam	PF01754, PF01428; PF01428, PF01754; PF01754, PF01428	A20-like zinc finger, AN1-like Zinc finger; AN1-like Zinc finger, A20-like zinc finger; A20-like zinc finger, AN1-like Zinc finger	IPR002653, IPR000058; IPR000058, IPR002653; IPR002653, IPR000058	Zinc finger, A20-type, Zinc finger, AN1-type; Zinc finger, AN1-type, Zinc finger, A20-type; Zinc finger, A20-type, Zinc finger, AN1-type
hsd_id_Theobroma_cacao_570	XP_007015863.2; XP_017982529.1; XP_017980231.1; XP_017980227.1; XP_017980749.1	491; 493; 497; 552; 492	Pfam	PF03015, PF07993; PF03015, PF07993; PF07993, PF03015; PF03015, PF07993; PF03015, PF07993	Male sterility protein, Male sterility protein; Male sterility protein, Male sterility protein; Male sterility protein, Male sterility protein; Male sterility protein, Male sterility protein; Male sterility protein, Male sterility protein	IPR033640, IPR013120; IPR033640, IPR013120; IPR013120, IPR033640; IPR033640, IPR013120; IPR033640, IPR013120	Fatty acyl-CoA reductase, C-terminal, Fatty acyl-coenzyme A reductase, NAD-binding domain; Fatty acyl-CoA reductase, C-terminal, Fatty acyl-coenzyme A reductase, NAD-binding domain; Fatty acyl-coenzyme A reductase, NAD-binding domain, Fatty acyl-CoA reductase, C-terminal; Fatty acyl-CoA reductase, C-terminal, Fatty acyl-coenzyme A reductase, NAD-binding domain; Fatty acyl-CoA reductase, C-terminal, Fatty acyl-coenzyme A reductase, NAD-binding domain
hsd_id_Theobroma_cacao_571	XP_007015883.1; XP_007027672.1; XP_007015884.1; XP_017975432.1	113; 113; 112; 112	Pfam	PF00428; PF00428; PF00428; PF00428	60s Acidic ribosomal protein; 60s Acidic ribosomal protein; 60s Acidic ribosomal protein; 60s Acidic ribosomal protein	-; -; -; -	-; -; -; -
hsd_id_Theobroma_cacao_572	XP_007015901.2; XP_017983621.1	387; 343	Pfam	PF02826, PF00389; PF02826, PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006140, IPR006139; IPR006140, IPR006139	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
hsd_id_Theobroma_cacao_573	XP_007015904.1; XP_007043131.1; XP_017973970.1	429; 499; 470	Pfam	PF00850; PF00850; PF00850	Histone deacetylase domain; Histone deacetylase domain; Histone deacetylase domain	IPR023801; IPR023801; IPR023801	Histone deacetylase domain; Histone deacetylase domain; Histone deacetylase domain
hsd_id_Theobroma_cacao_574	XP_007015917.2; XP_007039701.1	145; 145	Pfam	PF01125; PF01125	G10 protein; G10 protein	IPR001748; IPR001748	G10 protein; G10 protein
hsd_id_Theobroma_cacao_575	XP_007015922.1; XP_007040364.2	215; 214	Pfam	PF04525; PF04525	LURP-one-related; LURP-one-related	IPR007612; IPR007612	LURP-one-related; LURP-one-related
hsd_id_Theobroma_cacao_576	XP_007015936.1; XP_007047771.2	704; 744	Pfam	PF00860; PF00860	Permease family; Permease family	IPR006043; IPR006043	Nucleobase cation symporter 2 family; Nucleobase cation symporter 2 family
hsd_id_Theobroma_cacao_577	XP_007015941.1; XP_017971589.1; XP_017982937.1; XP_017978986.1	429; 371; 391; 396	Pfam	PF00800; PF00800; PF00800; PF00800	Prephenate dehydratase; Prephenate dehydratase; Prephenate dehydratase; Prephenate dehydratase	IPR001086; IPR001086; IPR001086; IPR001086	Prephenate dehydratase; Prephenate dehydratase; Prephenate dehydratase; Prephenate dehydratase
hsd_id_Theobroma_cacao_578	XP_007015951.2; XP_017974079.1	185; 185	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_579	XP_007015980.2; XP_007026889.2	427; 426	Pfam	PF11891; PF11891	Protein RETICULATA-related; Protein RETICULATA-related	IPR021825; IPR021825	Protein RETICULATA-related; Protein RETICULATA-related
hsd_id_Theobroma_cacao_580	XP_007015990.2; XP_017983723.1; XP_007024579.2	691; 671; 685	Pfam	PF02450; PF02450; PF02450	Lecithin:cholesterol acyltransferase; Lecithin:cholesterol acyltransferase; Lecithin:cholesterol acyltransferase	IPR003386; IPR003386; IPR003386	Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase; Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase; Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase
hsd_id_Theobroma_cacao_581	XP_007015991.1; XP_017977276.1; XP_007024353.2	355; 350; 354	Pfam	PF00657; PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_582	XP_007016003.2; XP_017976971.1	541; 553	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_583	XP_007016008.2; XP_017977676.1	504; 487	Pfam	PF14541, PF14543; PF14543, PF14541	Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal	IPR032799, IPR032861; IPR032861, IPR032799	Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal
hsd_id_Theobroma_cacao_584	XP_007016017.2; XP_007016018.2; XP_017982231.1	505; 500; 498	Pfam	PF05577; PF05577; PF05577	Serine carboxypeptidase S28; Serine carboxypeptidase S28; Serine carboxypeptidase S28	IPR008758; IPR008758; IPR008758	Peptidase S28; Peptidase S28; Peptidase S28
hsd_id_Theobroma_cacao_585	XP_007016031.2; XP_007024979.2; XP_007024982.2	417; 418; 394	Pfam	PF00348; PF00348; PF00348	Polyprenyl synthetase; Polyprenyl synthetase; Polyprenyl synthetase	IPR000092; IPR000092; IPR000092	Polyprenyl synthetase; Polyprenyl synthetase; Polyprenyl synthetase
hsd_id_Theobroma_cacao_586	XP_007016035.2; XP_017976275.1; XP_007029676.1; XP_007039479.1; XP_007018634.2; XP_007039909.2; XP_007052119.1	214; 202; 238; 222; 243; 270; 241	Pfam	PF04640; PF04640; PF04640; PF04640; PF04640; PF04640; PF04640	PLATZ transcription factor; PLATZ transcription factor; PLATZ transcription factor; PLATZ transcription factor; PLATZ transcription factor; PLATZ transcription factor; PLATZ transcription factor	IPR006734; IPR006734; IPR006734; IPR006734; IPR006734; IPR006734; IPR006734	PLATZ transcription factor; PLATZ transcription factor; PLATZ transcription factor; PLATZ transcription factor; PLATZ transcription factor; PLATZ transcription factor; PLATZ transcription factor
hsd_id_Theobroma_cacao_587	XP_007016050.2; XP_017982080.1; XP_017982053.1	732; 791; 855	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_588	XP_007016060.2; XP_017969918.1	404; 351	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_589	XP_007016064.2; XP_017977636.1; XP_017977335.1	223; 152; 195	Pfam	PF00080; PF00080; PF00080	Copper/zinc superoxide dismutase (SODC); Copper/zinc superoxide dismutase (SODC); Copper/zinc superoxide dismutase (SODC)	IPR001424; IPR001424; IPR001424	Superoxide dismutase, copper/zinc binding domain; Superoxide dismutase, copper/zinc binding domain; Superoxide dismutase, copper/zinc binding domain
hsd_id_Theobroma_cacao_590	XP_007016070.2; XP_007047958.2	584; 585	Pfam	PF13537, PF00733; PF00733, PF13537	Glutamine amidotransferase domain, Asparagine synthase; Asparagine synthase, Glutamine amidotransferase domain	IPR017932, IPR001962; IPR001962, IPR017932	Glutamine amidotransferase type 2 domain, Asparagine synthase; Asparagine synthase, Glutamine amidotransferase type 2 domain
hsd_id_Theobroma_cacao_591	XP_007016071.2; XP_007025418.2; XP_007021951.2; XP_007050058.2; XP_007022285.2; XP_007021950.1; XP_007021952.2; XP_017980377.1; XP_017970754.1; XP_017974356.1; XP_017974919.1	394; 363; 358; 360; 367; 356; 363; 370; 347; 362; 264	Pfam	PF13839, PF14416; PF13839, PF14416; PF14416, PF13839; PF13839, PF14416; PF14416, PF13839; PF13839, PF14416; PF13839, PF14416; PF13839, PF14416; PF13839, PF14416; PF13839, PF14416; PF14416, PF13839	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p	IPR026057, IPR025846; IPR026057, IPR025846; IPR025846, IPR026057; IPR026057, IPR025846; IPR025846, IPR026057; IPR026057, IPR025846; IPR026057, IPR025846; IPR026057, IPR025846; IPR026057, IPR025846; IPR026057, IPR025846; IPR025846, IPR026057	PC-Esterase, PMR5 N-terminal domain; PC-Esterase, PMR5 N-terminal domain; PMR5 N-terminal domain, PC-Esterase; PC-Esterase, PMR5 N-terminal domain; PMR5 N-terminal domain, PC-Esterase; PC-Esterase, PMR5 N-terminal domain; PC-Esterase, PMR5 N-terminal domain; PC-Esterase, PMR5 N-terminal domain; PC-Esterase, PMR5 N-terminal domain; PC-Esterase, PMR5 N-terminal domain; PMR5 N-terminal domain, PC-Esterase
hsd_id_Theobroma_cacao_592	XP_007016073.2; XP_017982597.1; XP_007016075.2	326; 328; 333	Pfam	PF14226, PF03171; PF03171, PF14226; PF03171, PF14226	non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR026992, IPR044861; IPR044861, IPR026992; IPR044861, IPR026992	Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_593	XP_007016077.1; XP_017980740.1	110; 126	Pfam	PF03660; PF03660	PHF5-like protein; PHF5-like protein	IPR005345; IPR005345	PHF5-like; PHF5-like
hsd_id_Theobroma_cacao_594	XP_007016088.1; XP_007025393.1; XP_007029365.1	145; 143; 148	Pfam	PF00403; PF00403; PF00403	Heavy-metal-associated domain; Heavy-metal-associated domain; Heavy-metal-associated domain	IPR006121; IPR006121; IPR006121	Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA
hsd_id_Theobroma_cacao_595	XP_007016107.2; XP_007026715.2; XP_007049462.2; XP_017980733.1; XP_017980644.1; XP_017980735.1	443; 449; 463; 434; 453; 428	Pfam	PF01699; PF01699; PF01699; PF01699; PF01699; PF01699	Sodium/calcium exchanger protein; Sodium/calcium exchanger protein; Sodium/calcium exchanger protein; Sodium/calcium exchanger protein; Sodium/calcium exchanger protein; Sodium/calcium exchanger protein	IPR004837; IPR004837; IPR004837; IPR004837; IPR004837; IPR004837	Sodium/calcium exchanger membrane region; Sodium/calcium exchanger membrane region; Sodium/calcium exchanger membrane region; Sodium/calcium exchanger membrane region; Sodium/calcium exchanger membrane region; Sodium/calcium exchanger membrane region
hsd_id_Theobroma_cacao_596	XP_007016118.2; XP_007030324.2; XP_007050113.2; XP_017975458.1	462; 510; 517; 488	Pfam	PF00909; PF00909; PF00909; PF00909	Ammonium Transporter Family; Ammonium Transporter Family; Ammonium Transporter Family; Ammonium Transporter Family	IPR024041; IPR024041; IPR024041; IPR024041	Ammonium transporter AmtB-like domain; Ammonium transporter AmtB-like domain; Ammonium transporter AmtB-like domain; Ammonium transporter AmtB-like domain
hsd_id_Theobroma_cacao_597	XP_007016119.1; XP_017982742.1; XP_007037999.2; XP_007029811.2; XP_007029810.2	534; 536; 521; 522; 513	Pfam	PF04185; PF04185; PF04185; PF04185; PF04185	Phosphoesterase family; Phosphoesterase family; Phosphoesterase family; Phosphoesterase family; Phosphoesterase family	IPR007312; IPR007312; IPR007312; IPR007312; IPR007312	Phosphoesterase; Phosphoesterase; Phosphoesterase; Phosphoesterase; Phosphoesterase
hsd_id_Theobroma_cacao_598	XP_007016120.2; XP_017977027.1	901; 980	Pfam	PF00626, PF02209; PF00626, PF02209	Gelsolin repeat, Villin headpiece domain; Gelsolin repeat, Villin headpiece domain	IPR007123, IPR003128; IPR007123, IPR003128	Gelsolin-like domain, Villin headpiece; Gelsolin-like domain, Villin headpiece
hsd_id_Theobroma_cacao_599	XP_007016124.2; XP_017982079.1; XP_017982096.1	475; 475; 475	Pfam	PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_600	XP_007016138.2; XP_017984850.1	321; 320	Pfam	PF17777, PF00428, PF00466; PF17777, PF00466, PF00428	Insertion domain in 60S ribosomal protein L10P, 60s Acidic ribosomal protein, Ribosomal protein L10; Insertion domain in 60S ribosomal protein L10P, Ribosomal protein L10, 60s Acidic ribosomal protein	IPR040637, -, IPR001790; IPR040637, IPR001790, -	60S ribosomal protein L10P, insertion domain, -, Ribosomal protein L10P; 60S ribosomal protein L10P, insertion domain, Ribosomal protein L10P, -
hsd_id_Theobroma_cacao_601	XP_007016147.2; XP_017984169.1	560; 463	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_602	XP_007016155.2; XP_007040281.2; XP_017977637.1	511; 541; 535	Pfam	PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_603	XP_007016189.1; XP_017976199.1	531; 515	Pfam	PF07690; PF07690	Major Facilitator Superfamily; Major Facilitator Superfamily	IPR011701; IPR011701	Major facilitator superfamily; Major facilitator superfamily
hsd_id_Theobroma_cacao_604	XP_007016191.2; XP_007051753.1	450; 437	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_605	XP_007016213.1; XP_007027607.2; XP_007038456.1; XP_007037735.1	475; 445; 445; 488	Pfam	PF00113, PF03952; PF03952, PF00113; PF03952, PF00113; PF00113, PF03952	Enolase, C-terminal TIM barrel domain, Enolase, N-terminal domain; Enolase, N-terminal domain, Enolase, C-terminal TIM barrel domain; Enolase, N-terminal domain, Enolase, C-terminal TIM barrel domain; Enolase, C-terminal TIM barrel domain, Enolase, N-terminal domain	IPR020810, IPR020811; IPR020811, IPR020810; IPR020811, IPR020810; IPR020810, IPR020811	Enolase, C-terminal TIM barrel domain, Enolase, N-terminal; Enolase, N-terminal, Enolase, C-terminal TIM barrel domain; Enolase, N-terminal, Enolase, C-terminal TIM barrel domain; Enolase, C-terminal TIM barrel domain, Enolase, N-terminal
hsd_id_Theobroma_cacao_606	XP_007016218.2; XP_017977181.1	781; 789	Pfam	PF04734, PF17048; PF04734, PF17048	Neutral/alkaline non-lysosomal ceramidase, N-terminal, Neutral/alkaline non-lysosomal ceramidase, C-terminal; Neutral/alkaline non-lysosomal ceramidase, N-terminal, Neutral/alkaline non-lysosomal ceramidase, C-terminal	IPR031329, IPR031331; IPR031329, IPR031331	Neutral/alkaline non-lysosomal ceramidase, N-terminal, Neutral/alkaline non-lysosomal ceramidase, C-terminal; Neutral/alkaline non-lysosomal ceramidase, N-terminal, Neutral/alkaline non-lysosomal ceramidase, C-terminal
hsd_id_Theobroma_cacao_607	XP_007016224.1; XP_017969339.1; XP_007051037.1; XP_007035367.2; XP_007044464.2; XP_007017450.2; XP_007032311.2; XP_017969353.1	344; 348; 367; 352; 376; 353; 357; 354	Pfam	PF01501; PF01501; PF01501; PF01501; PF01501; PF01501; PF01501; PF01501	Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8	IPR002495; IPR002495; IPR002495; IPR002495; IPR002495; IPR002495; IPR002495; IPR002495	Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8
hsd_id_Theobroma_cacao_608	XP_007016228.2; XP_007016230.2	493; 506	Pfam	PF05056; PF05056	Protein of unknown function (DUF674); Protein of unknown function (DUF674)	IPR007750; IPR007750	Protein of unknown function DUF674; Protein of unknown function DUF674
hsd_id_Theobroma_cacao_609	XP_007016253.1; XP_007016258.2; XP_017982012.1; XP_007016580.2; XP_007016262.2; XP_007016254.1; XP_007016442.2; XP_007016261.2; XP_007016441.2; XP_017984168.1; XP_007026852.2; XP_007026853.1; XP_007031690.2; XP_007020057.2; XP_007032121.2; XP_007012371.2; XP_017978191.1; XP_007012373.2; XP_007012372.2	150; 157; 156; 158; 158; 156; 158; 155; 159; 132; 144; 154; 173; 162; 141; 156; 192; 159; 157	Pfam	PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011; PF00011	Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family; Hsp20/alpha crystallin family	IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068; IPR002068	Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain
hsd_id_Theobroma_cacao_610	XP_007016269.1; XP_007016270.2; XP_017976675.1	154; 159; 146	Pfam	PF04145; PF04145; PF04145	Ctr copper transporter family; Ctr copper transporter family; Ctr copper transporter family	IPR007274; IPR007274; IPR007274	Ctr copper transporter; Ctr copper transporter; Ctr copper transporter
hsd_id_Theobroma_cacao_611	XP_007016274.1; XP_007026861.2; XP_007035783.2; XP_017976363.1	164; 165; 161; 123	Pfam	PF00582; PF00582; PF00582; PF00582	Universal stress protein family; Universal stress protein family; Universal stress protein family; Universal stress protein family	IPR006016; IPR006016; IPR006016; IPR006016	UspA; UspA; UspA; UspA
hsd_id_Theobroma_cacao_612	XP_007016282.2; XP_017985161.1	202; 179	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_613	XP_007016285.2; XP_007009156.2	157; 171	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_614	XP_007016336.2; XP_017977124.1	561; 501	Pfam	PF00083; PF00083	Sugar (and other) transporter; Sugar (and other) transporter	IPR005828; IPR005828	Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like
hsd_id_Theobroma_cacao_615	XP_007016365.2; XP_017976714.1	108; 57	Pfam	PF08137; PF08137	DVL family; DVL family	IPR012552; IPR012552	DVL; DVL
hsd_id_Theobroma_cacao_616	XP_007016368.2; XP_017972112.1; XP_017981757.1; XP_017972083.1	498; 465; 471; 499	Pfam	PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_617	XP_007016372.2; XP_017970752.1	311; 344	Pfam	PF03152; PF03152	Ubiquitin fusion degradation protein UFD1; Ubiquitin fusion degradation protein UFD1	IPR004854; IPR004854	Ubiquitin fusion degradation protein Ufd1-like; Ubiquitin fusion degradation protein Ufd1-like
hsd_id_Theobroma_cacao_618	XP_007016387.2; XP_007027003.2	456; 456	Pfam	PF01237; PF01237	Oxysterol-binding protein; Oxysterol-binding protein	IPR000648; IPR000648	Oxysterol-binding protein; Oxysterol-binding protein
hsd_id_Theobroma_cacao_619	XP_007016393.2; XP_017969477.1; XP_007034210.2; XP_017974575.1; XP_007034211.2	692; 595; 533; 567; 516	Pfam	PF03016; PF03016; PF03016; PF03016; PF03016	Exostosin family; Exostosin family; Exostosin family; Exostosin family; Exostosin family	IPR040911; IPR040911; IPR040911; IPR040911; IPR040911	Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain
hsd_id_Theobroma_cacao_620	XP_007016394.1; XP_017976010.1; XP_007038618.2; XP_007040140.2; XP_017979235.1	407; 383; 334; 329; 323	Pfam	PF01694; PF01694; PF01694; PF01694; PF01694	Rhomboid family; Rhomboid family; Rhomboid family; Rhomboid family; Rhomboid family	IPR022764; IPR022764; IPR022764; IPR022764; IPR022764	Peptidase S54, rhomboid domain; Peptidase S54, rhomboid domain; Peptidase S54, rhomboid domain; Peptidase S54, rhomboid domain; Peptidase S54, rhomboid domain
hsd_id_Theobroma_cacao_621	XP_007016406.2; XP_017985155.1; XP_007041930.1	253; 254; 307	Pfam	PF00121; PF00121; PF00121	Triosephosphate isomerase; Triosephosphate isomerase; Triosephosphate isomerase	IPR000652; IPR000652; IPR000652	Triosephosphate isomerase; Triosephosphate isomerase; Triosephosphate isomerase
hsd_id_Theobroma_cacao_622	XP_007016425.2; XP_007039547.2	733; 786	Pfam	PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_623	XP_007016428.2; XP_017984481.1; XP_007035152.2	340; 263; 322	Pfam	PF01417; PF01417; PF01417	ENTH domain; ENTH domain; ENTH domain	IPR013809; IPR013809; IPR013809	ENTH  domain; ENTH  domain; ENTH  domain
hsd_id_Theobroma_cacao_624	XP_007016456.1; XP_017985186.1	311; 318	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_625	XP_007016478.2; XP_017984785.1; XP_017975430.1; XP_007050928.1; XP_007027130.1	346; 343; 436; 440; 448	Pfam	PF16363; PF16363; PF16363; PF16363; PF16363	GDP-mannose 4,6 dehydratase; GDP-mannose 4,6 dehydratase; GDP-mannose 4,6 dehydratase; GDP-mannose 4,6 dehydratase; GDP-mannose 4,6 dehydratase	IPR016040; IPR016040; IPR016040; IPR016040; IPR016040	NAD(P)-binding domain; NAD(P)-binding domain; NAD(P)-binding domain; NAD(P)-binding domain; NAD(P)-binding domain
hsd_id_Theobroma_cacao_626	XP_007016491.2; XP_007027085.2	119; 120	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_627	XP_007016496.1; XP_007027090.2; XP_017985042.1; XP_007040194.1; XP_007051847.1; XP_007050307.1; XP_007035112.1; XP_007041872.2	139; 139; 139; 139; 139; 146; 143; 143	Pfam	PF00241; PF00241; PF00241; PF00241; PF00241; PF00241; PF00241; PF00241	Cofilin/tropomyosin-type actin-binding protein; Cofilin/tropomyosin-type actin-binding protein; Cofilin/tropomyosin-type actin-binding protein; Cofilin/tropomyosin-type actin-binding protein; Cofilin/tropomyosin-type actin-binding protein; Cofilin/tropomyosin-type actin-binding protein; Cofilin/tropomyosin-type actin-binding protein; Cofilin/tropomyosin-type actin-binding protein	IPR002108; IPR002108; IPR002108; IPR002108; IPR002108; IPR002108; IPR002108; IPR002108	Actin-depolymerising factor homology domain; Actin-depolymerising factor homology domain; Actin-depolymerising factor homology domain; Actin-depolymerising factor homology domain; Actin-depolymerising factor homology domain; Actin-depolymerising factor homology domain; Actin-depolymerising factor homology domain; Actin-depolymerising factor homology domain
hsd_id_Theobroma_cacao_628	XP_007016537.2; XP_007042892.2; XP_007047852.2	540; 561; 544	Pfam	PF00926, PF00925; PF00926, PF00925; PF00926, PF00925	3,4-dihydroxy-2-butanone 4-phosphate synthase, GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase, GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase, GTP cyclohydrolase II	IPR000422, IPR032677; IPR000422, IPR032677; IPR000422, IPR032677	3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB, GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB, GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB, GTP cyclohydrolase II
hsd_id_Theobroma_cacao_629	XP_007016552.2; XP_017977382.1	544; 537	Pfam	PF13962, PF12796; PF13962, PF12796	Domain of unknown function, Ankyrin repeats (3 copies); Domain of unknown function, Ankyrin repeats (3 copies)	IPR026961, IPR020683; IPR026961, IPR020683	PGG domain, Ankyrin repeat-containing domain; PGG domain, Ankyrin repeat-containing domain
hsd_id_Theobroma_cacao_630	XP_007016586.1; XP_017982532.1; XP_007016609.2; XP_017982595.1	303; 305; 304; 304	Pfam	PF00704; PF00704; PF00704; PF00704	Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18	IPR001223; IPR001223; IPR001223; IPR001223	Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain
hsd_id_Theobroma_cacao_631	XP_007016597.2; XP_007027113.2	1052; 1053	Pfam	PF00225; PF00225	Kinesin motor domain; Kinesin motor domain	IPR001752; IPR001752	Kinesin motor domain; Kinesin motor domain
hsd_id_Theobroma_cacao_632	XP_007016604.2; XP_007040366.2; XP_007030987.2; XP_017981756.1; XP_017983820.1; XP_007038195.2	911; 932; 889; 949; 936; 910	Pfam	PF08022, PF08414, PF08030, PF01794; PF08414, PF08030, PF08022, PF01794; PF08414, PF08022, PF01794, PF08030; PF01794, PF08414, PF08022, PF08030; PF08414, PF01794, PF08030, PF08022; PF08022, PF08030, PF08414, PF01794	FAD-binding domain, Respiratory burst NADPH oxidase, Ferric reductase NAD binding domain, Ferric reductase like transmembrane component; Respiratory burst NADPH oxidase, Ferric reductase NAD binding domain, FAD-binding domain, Ferric reductase like transmembrane component; Respiratory burst NADPH oxidase, FAD-binding domain, Ferric reductase like transmembrane component, Ferric reductase NAD binding domain; Ferric reductase like transmembrane component, Respiratory burst NADPH oxidase, FAD-binding domain, Ferric reductase NAD binding domain; Respiratory burst NADPH oxidase, Ferric reductase like transmembrane component, Ferric reductase NAD binding domain, FAD-binding domain; FAD-binding domain, Ferric reductase NAD binding domain, Respiratory burst NADPH oxidase, Ferric reductase like transmembrane component	IPR013112, IPR013623, IPR013121, IPR013130; IPR013623, IPR013121, IPR013112, IPR013130; IPR013623, IPR013112, IPR013130, IPR013121; IPR013130, IPR013623, IPR013112, IPR013121; IPR013623, IPR013130, IPR013121, IPR013112; IPR013112, IPR013121, IPR013623, IPR013130	FAD-binding 8, NADPH oxidase Respiratory burst, Ferric reductase, NAD binding domain, Ferric reductase transmembrane component-like domain; NADPH oxidase Respiratory burst, Ferric reductase, NAD binding domain, FAD-binding 8, Ferric reductase transmembrane component-like domain; NADPH oxidase Respiratory burst, FAD-binding 8, Ferric reductase transmembrane component-like domain, Ferric reductase, NAD binding domain; Ferric reductase transmembrane component-like domain, NADPH oxidase Respiratory burst, FAD-binding 8, Ferric reductase, NAD binding domain; NADPH oxidase Respiratory burst, Ferric reductase transmembrane component-like domain, Ferric reductase, NAD binding domain, FAD-binding 8; FAD-binding 8, Ferric reductase, NAD binding domain, NADPH oxidase Respiratory burst, Ferric reductase transmembrane component-like domain
hsd_id_Theobroma_cacao_633	XP_007016612.2; XP_017982435.1	396; 396	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_634	XP_007016624.2; XP_007040329.2	511; 541	Pfam	PF04646; PF04646	Protein of unknown function, DUF604; Protein of unknown function, DUF604	IPR006740; IPR006740	Protein of unknown function DUF604; Protein of unknown function DUF604
hsd_id_Theobroma_cacao_635	XP_007016629.2; XP_017977296.1; XP_007039206.2; XP_017984660.1; XP_017985431.1	765; 785; 696; 815; 706	Pfam	PF06203, PF00072; PF06203, PF00072; PF00072, PF06203; PF06203, PF00072; PF06203, PF00072	CCT motif, Response regulator receiver domain; CCT motif, Response regulator receiver domain; Response regulator receiver domain, CCT motif; CCT motif, Response regulator receiver domain; CCT motif, Response regulator receiver domain	IPR010402, IPR001789; IPR010402, IPR001789; IPR001789, IPR010402; IPR010402, IPR001789; IPR010402, IPR001789	CCT domain, Signal transduction response regulator, receiver domain; CCT domain, Signal transduction response regulator, receiver domain; Signal transduction response regulator, receiver domain, CCT domain; CCT domain, Signal transduction response regulator, receiver domain; CCT domain, Signal transduction response regulator, receiver domain
hsd_id_Theobroma_cacao_636	XP_007016636.1; XP_007040337.2; XP_007051730.2; XP_017975176.1; XP_007016654.2; XP_007017621.1; XP_007046832.2	371; 374; 374; 403; 375; 372; 368	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_637	XP_007016653.2; XP_007027230.1; XP_007041862.1; XP_007046646.2	250; 251; 288; 279	Pfam	PF00141; PF00141; PF00141; PF00141	Peroxidase; Peroxidase; Peroxidase; Peroxidase	IPR002016; IPR002016; IPR002016; IPR002016	Haem peroxidase; Haem peroxidase; Haem peroxidase; Haem peroxidase
hsd_id_Theobroma_cacao_638	XP_007016670.1; XP_007048061.1	112; 112	Pfam	PF01248; PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	IPR004038; IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45; Ribosomal protein L7Ae/L30e/S12e/Gadd45
hsd_id_Theobroma_cacao_639	XP_007016682.2; XP_017982625.1; XP_017972414.1	615; 598; 544	Pfam	PF04873; PF04873; PF04873	Ethylene insensitive 3; Ethylene insensitive 3; Ethylene insensitive 3	IPR006957; IPR006957; IPR006957	Ethylene insensitive 3; Ethylene insensitive 3; Ethylene insensitive 3
hsd_id_Theobroma_cacao_640	XP_007016684.2; XP_007048030.1	575; 579	Pfam	PF00394, PF07732, PF07731; PF00394, PF07732, PF07731	Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase	IPR001117, IPR011707, IPR011706; IPR001117, IPR011707, IPR011706	Multicopper oxidase, type 1, Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal; Multicopper oxidase, type 1, Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal
hsd_id_Theobroma_cacao_641	XP_007016719.2; XP_017977099.1; XP_007048885.1	514; 515; 490	Pfam	PF12906; PF12906; PF12906	RING-variant domain; RING-variant domain; RING-variant domain	IPR011016; IPR011016; IPR011016	Zinc finger, RING-CH-type; Zinc finger, RING-CH-type; Zinc finger, RING-CH-type
hsd_id_Theobroma_cacao_642	XP_007016742.1; XP_017979514.1; XP_007025240.2	179; 209; 143	Pfam	PF04520; PF04520; PF04520	Senescence regulator; Senescence regulator; Senescence regulator	IPR007608; IPR007608; IPR007608	Senescence regulator S40; Senescence regulator S40; Senescence regulator S40
hsd_id_Theobroma_cacao_643	XP_007016753.2; XP_007027335.1	190; 178	Pfam	PF04535; PF04535	Domain of unknown function (DUF588); Domain of unknown function (DUF588)	IPR006702; IPR006702	Casparian strip membrane protein domain; Casparian strip membrane protein domain
hsd_id_Theobroma_cacao_644	XP_007016770.2; XP_007017073.1	340; 353	Pfam	PF03151; PF03151	Triose-phosphate Transporter family; Triose-phosphate Transporter family	IPR004853; IPR004853	Sugar phosphate transporter domain; Sugar phosphate transporter domain
hsd_id_Theobroma_cacao_645	XP_007016793.2; XP_007016796.1; XP_007027463.2; XP_007028635.2; XP_017976455.1; XP_007028639.2	275; 275; 282; 279; 242; 278	Pfam	PF00194; PF00194; PF00194; PF00194; PF00194; PF00194	Eukaryotic-type carbonic anhydrase; Eukaryotic-type carbonic anhydrase; Eukaryotic-type carbonic anhydrase; Eukaryotic-type carbonic anhydrase; Eukaryotic-type carbonic anhydrase; Eukaryotic-type carbonic anhydrase	IPR001148; IPR001148; IPR001148; IPR001148; IPR001148; IPR001148	Alpha carbonic anhydrase domain; Alpha carbonic anhydrase domain; Alpha carbonic anhydrase domain; Alpha carbonic anhydrase domain; Alpha carbonic anhydrase domain; Alpha carbonic anhydrase domain
hsd_id_Theobroma_cacao_646	XP_007016801.2; XP_007051842.2; XP_017973851.1	214; 190; 184	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_647	XP_007016822.2; XP_007041087.2; XP_017983458.1; XP_007024263.2; XP_007045690.2	586; 584; 607; 608; 596	Pfam	PF00118; PF00118; PF00118; PF00118; PF00118	TCP-1/cpn60 chaperonin family; TCP-1/cpn60 chaperonin family; TCP-1/cpn60 chaperonin family; TCP-1/cpn60 chaperonin family; TCP-1/cpn60 chaperonin family	IPR002423; IPR002423; IPR002423; IPR002423; IPR002423	Chaperonin Cpn60/TCP-1 family; Chaperonin Cpn60/TCP-1 family; Chaperonin Cpn60/TCP-1 family; Chaperonin Cpn60/TCP-1 family; Chaperonin Cpn60/TCP-1 family
hsd_id_Theobroma_cacao_648	XP_007016829.1; XP_017976769.1; XP_007016831.2; XP_017969984.1; XP_007044726.2; XP_017975646.1	530; 530; 534; 506; 504; 459	Pfam	PF07690; PF07690; PF07690; PF07690; PF07690; PF07690	Major Facilitator Superfamily; Major Facilitator Superfamily; Major Facilitator Superfamily; Major Facilitator Superfamily; Major Facilitator Superfamily; Major Facilitator Superfamily	IPR011701; IPR011701; IPR011701; IPR011701; IPR011701; IPR011701	Major facilitator superfamily; Major facilitator superfamily; Major facilitator superfamily; Major facilitator superfamily; Major facilitator superfamily; Major facilitator superfamily
hsd_id_Theobroma_cacao_649	XP_007016834.1; XP_017977280.1	804; 805	Pfam	PF02933, PF02359, PF17862, PF00004; PF02933, PF00004, PF02359, PF17862	Cell division protein 48 (CDC48), domain 2, Cell division protein 48 (CDC48), N-terminal domain, AAA+ lid domain, ATPase family associated with various cellular activities (AAA); Cell division protein 48 (CDC48), domain 2, ATPase family associated with various cellular activities (AAA), Cell division protein 48 (CDC48), N-terminal domain, AAA+ lid domain	IPR004201, IPR003338, IPR041569, IPR003959; IPR004201, IPR003959, IPR003338, IPR041569	CDC48, domain 2, CDC48, N-terminal subdomain, AAA ATPase, AAA+ lid domain, ATPase, AAA-type, core; CDC48, domain 2, ATPase, AAA-type, core, CDC48, N-terminal subdomain, AAA ATPase, AAA+ lid domain
hsd_id_Theobroma_cacao_650	XP_007016838.2; XP_007027384.2	499; 484	Pfam	PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_651	XP_007016849.2; XP_017976326.1	545; 548	Pfam	PF13193, PF00501; PF00501, PF13193	AMP-binding enzyme C-terminal domain, AMP-binding enzyme; AMP-binding enzyme, AMP-binding enzyme C-terminal domain	IPR025110, IPR000873; IPR000873, IPR025110	AMP-binding enzyme, C-terminal domain, AMP-dependent synthetase/ligase; AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain
hsd_id_Theobroma_cacao_652	XP_007016858.2; XP_017983172.1	116; 163	Pfam	PF08646; PF08646	Replication factor-A C terminal domain; Replication factor-A C terminal domain	IPR013955; IPR013955	Replication factor A, C-terminal; Replication factor A, C-terminal
hsd_id_Theobroma_cacao_653	XP_007016865.2; XP_017977446.1	301; 293	Pfam	PF00722, PF06955; PF00722, PF06955	Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus	IPR000757, IPR010713; IPR000757, IPR010713	Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal
hsd_id_Theobroma_cacao_654	XP_007016901.2; XP_017984729.1	1703; 1705	Pfam	PF01394, PF13838, PF09268, PF00637; PF01394, PF09268, PF13838, PF00637	Clathrin propeller repeat, Clathrin-H-link, Clathrin, heavy-chain linker, Region in Clathrin and VPS; Clathrin propeller repeat, Clathrin, heavy-chain linker, Clathrin-H-link, Region in Clathrin and VPS	IPR022365, -, IPR015348, IPR000547; IPR022365, IPR015348, -, IPR000547	Clathrin, heavy chain, propeller repeat, -, Clathrin, heavy chain, linker, core motif, Clathrin, heavy chain/VPS, 7-fold repeat; Clathrin, heavy chain, propeller repeat, Clathrin, heavy chain, linker, core motif, -, Clathrin, heavy chain/VPS, 7-fold repeat
hsd_id_Theobroma_cacao_655	XP_007016906.2; XP_007026644.2	224; 226	Pfam	PF00638; PF00638	RanBP1 domain; RanBP1 domain	IPR000156; IPR000156	Ran binding domain; Ran binding domain
hsd_id_Theobroma_cacao_656	XP_007016910.2; XP_017976842.1; XP_017976156.1; XP_007025437.2	605; 605; 605; 589	Pfam	PF02775, PF00205, PF02776; PF00205, PF02776, PF02775; PF02776, PF00205, PF02775; PF00205, PF02776, PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain, Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	IPR011766, IPR012000, IPR012001; IPR012000, IPR012001, IPR011766; IPR012001, IPR012000, IPR011766; IPR012000, IPR012001, IPR011766	Thiamine pyrophosphate enzyme, C-terminal TPP-binding, Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain, Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain, Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain, Thiamine pyrophosphate enzyme, C-terminal TPP-binding
hsd_id_Theobroma_cacao_657	XP_007016944.2; XP_017977504.1	938; 955	Pfam	PF13181; PF13181	Tetratricopeptide repeat; Tetratricopeptide repeat	IPR019734; IPR019734	Tetratricopeptide repeat; Tetratricopeptide repeat
hsd_id_Theobroma_cacao_658	XP_007016962.2; XP_017980188.1; XP_007048693.2; XP_007025375.1; XP_017976818.1; XP_017974952.1; XP_007022986.2; XP_007030416.2	241; 186; 222; 179; 187; 209; 218; 239	Pfam	PF04852; PF04852; PF04852; PF04852; PF04852; PF04852; PF04852; PF04852	Protein of unknown function (DUF640); Protein of unknown function (DUF640); Protein of unknown function (DUF640); Protein of unknown function (DUF640); Protein of unknown function (DUF640); Protein of unknown function (DUF640); Protein of unknown function (DUF640); Protein of unknown function (DUF640)	IPR006936; IPR006936; IPR006936; IPR006936; IPR006936; IPR006936; IPR006936; IPR006936	ALOG domain; ALOG domain; ALOG domain; ALOG domain; ALOG domain; ALOG domain; ALOG domain; ALOG domain
hsd_id_Theobroma_cacao_659	XP_007016978.2; XP_017982617.1; XP_007016982.2; XP_007016983.2; XP_007016981.2; XP_007016980.2	459; 461; 446; 464; 464; 461	Pfam	PF00201; PF00201; PF00201; PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_660	XP_007016984.2; XP_007026591.2	331; 323	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_661	XP_007017006.1; XP_007033697.2; XP_017982444.1	353; 352; 365	Pfam	PF00657; PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_662	XP_007017015.2; XP_017977792.1	683; 666	Pfam	PF13516; PF13516	Leucine Rich repeat; Leucine Rich repeat	IPR001611; IPR001611	Leucine-rich repeat; Leucine-rich repeat
hsd_id_Theobroma_cacao_663	XP_007017020.1; XP_017971195.1	232; 243	Pfam	PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_664	XP_007017039.1; XP_007031707.2; XP_017974772.1	163; 158; 157	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_665	XP_007017086.2; XP_007033531.2; XP_007025776.2	905; 911; 887	Pfam	PF07496, PF02362; PF07496, PF02362; PF07496, PF02362	CW-type Zinc Finger, B3 DNA binding domain; CW-type Zinc Finger, B3 DNA binding domain; CW-type Zinc Finger, B3 DNA binding domain	IPR011124, IPR003340; IPR011124, IPR003340; IPR011124, IPR003340	Zinc finger, CW-type, B3 DNA binding domain; Zinc finger, CW-type, B3 DNA binding domain; Zinc finger, CW-type, B3 DNA binding domain
hsd_id_Theobroma_cacao_666	XP_007017093.2; XP_017974735.1; XP_017974844.1	222; 206; 218	Pfam	PF04525; PF04525; PF04525	LURP-one-related; LURP-one-related; LURP-one-related	IPR007612; IPR007612; IPR007612	LURP-one-related; LURP-one-related; LURP-one-related
hsd_id_Theobroma_cacao_667	XP_007017138.1; XP_007037644.1	325; 320	Pfam	PF01112; PF01112	Asparaginase; Asparaginase	IPR000246; IPR000246	Peptidase T2, asparaginase 2; Peptidase T2, asparaginase 2
hsd_id_Theobroma_cacao_668	XP_007017144.2; XP_007017219.2	197; 215	Pfam	PF11523; PF11523	Protein of unknown function (DUF3223); Protein of unknown function (DUF3223)	-; -	-; -
hsd_id_Theobroma_cacao_669	XP_007017148.1; XP_007042496.2	237; 258	Pfam	PF00168; PF00168	C2 domain; C2 domain	IPR000008; IPR000008	C2 domain; C2 domain
hsd_id_Theobroma_cacao_670	XP_007017156.2; XP_017971862.1; XP_007042487.2; XP_007017157.2	441; 499; 415; 441	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_671	XP_007017164.1; XP_017974966.1	1034; 1032	Pfam	PF00225; PF00225	Kinesin motor domain; Kinesin motor domain	IPR001752; IPR001752	Kinesin motor domain; Kinesin motor domain
hsd_id_Theobroma_cacao_672	XP_007017168.2; XP_017983807.1	166; 179	Pfam	PF00179; PF00179	Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme	IPR000608; IPR000608	Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2
hsd_id_Theobroma_cacao_673	XP_007017178.2; XP_017970875.1; XP_007047341.2; XP_017981064.1	648; 645; 659; 644	Pfam	PF00658, PF00076; PF00658, PF00076; PF00658, PF00076; PF00658, PF00076	Poly-adenylate binding protein, unique domain, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); Poly-adenylate binding protein, unique domain, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); Poly-adenylate binding protein, unique domain, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); Poly-adenylate binding protein, unique domain, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR002004, IPR000504; IPR002004, IPR000504; IPR002004, IPR000504; IPR002004, IPR000504	Polyadenylate-binding protein/Hyperplastic disc protein, RNA recognition motif domain; Polyadenylate-binding protein/Hyperplastic disc protein, RNA recognition motif domain; Polyadenylate-binding protein/Hyperplastic disc protein, RNA recognition motif domain; Polyadenylate-binding protein/Hyperplastic disc protein, RNA recognition motif domain
hsd_id_Theobroma_cacao_674	XP_007017189.1; XP_017970666.1	266; 297	Pfam	PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_675	XP_007017195.2; XP_017980012.1; XP_017980006.1; XP_017981593.1	760; 764; 799; 772	Pfam	PF00082, PF17766, PF05922; PF17766, PF00082, PF05922; PF00082, PF05922, PF17766; PF17766, PF00082, PF05922	Subtilase family, Fibronectin type-III domain, Peptidase inhibitor I9; Fibronectin type-III domain, Subtilase family, Peptidase inhibitor I9; Subtilase family, Peptidase inhibitor I9, Fibronectin type-III domain; Fibronectin type-III domain, Subtilase family, Peptidase inhibitor I9	IPR000209, IPR041469, IPR010259; IPR041469, IPR000209, IPR010259; IPR000209, IPR010259, IPR041469; IPR041469, IPR000209, IPR010259	Peptidase S8/S53 domain, Subtilisin-like protease, fibronectin type-III domain, Peptidase S8 propeptide/proteinase inhibitor I9; Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9; Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9, Subtilisin-like protease, fibronectin type-III domain; Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9
hsd_id_Theobroma_cacao_676	XP_007017204.1; XP_007047278.2	263; 261	Pfam	PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_677	XP_007017214.2; XP_007042440.1; XP_017983991.1; XP_017977393.1	436; 423; 382; 418	Pfam	PF00170; PF00170; PF00170; PF00170	bZIP transcription factor; bZIP transcription factor; bZIP transcription factor; bZIP transcription factor	IPR004827; IPR004827; IPR004827; IPR004827	Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain
hsd_id_Theobroma_cacao_678	XP_007017242.1; XP_017981207.1	412; 415	Pfam	PF07821, PF00128; PF07821, PF00128	Alpha-amylase C-terminal beta-sheet domain, Alpha amylase, catalytic domain; Alpha-amylase C-terminal beta-sheet domain, Alpha amylase, catalytic domain	IPR012850, IPR006047; IPR012850, IPR006047	Alpha-amylase, C-terminal beta-sheet, Glycosyl hydrolase, family 13, catalytic domain; Alpha-amylase, C-terminal beta-sheet, Glycosyl hydrolase, family 13, catalytic domain
hsd_id_Theobroma_cacao_679	XP_007017244.2; XP_007042424.2	644; 644	Pfam	PF08553; PF08553	VID27 C-terminal WD40-like domain; VID27 C-terminal WD40-like domain	IPR013863; IPR013863	Vacuolar import/degradation Vid27, C-terminal; Vacuolar import/degradation Vid27, C-terminal
hsd_id_Theobroma_cacao_680	XP_007017251.1; XP_007048326.2; XP_007019401.2	593; 653; 644	Pfam	PF01501; PF01501; PF01501	Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8	IPR002495; IPR002495; IPR002495	Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8
hsd_id_Theobroma_cacao_681	XP_007017290.2; XP_007042390.2	407; 404	Pfam	PF05705; PF05705	Eukaryotic protein of unknown function (DUF829); Eukaryotic protein of unknown function (DUF829)	IPR008547; IPR008547	Protein of unknown function DUF829, TMEM53; Protein of unknown function DUF829, TMEM53
hsd_id_Theobroma_cacao_682	XP_007017298.2; XP_007017300.2; XP_017970068.1; XP_017971887.1; XP_017974254.1; XP_007042383.1; XP_007034685.1	326; 325; 319; 305; 319; 308; 324	Pfam	PF07859; PF07859; PF07859; PF07859; PF07859; PF07859; PF07859	alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR013094; IPR013094; IPR013094; IPR013094; IPR013094; IPR013094; IPR013094	Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3
hsd_id_Theobroma_cacao_683	XP_007017303.2; XP_007017306.2; XP_017980862.1; XP_017980805.1; XP_007017310.2; XP_007047215.2; XP_017976540.1; XP_007047219.1; XP_017972239.1; XP_007030470.1; XP_007030473.2	437; 420; 421; 410; 404; 401; 393; 411; 389; 424; 434	Pfam	PF01734; PF01734; PF01734; PF01734; PF01734; PF01734; PF01734; PF01734; PF01734; PF01734; PF01734	Patatin-like phospholipase; Patatin-like phospholipase; Patatin-like phospholipase; Patatin-like phospholipase; Patatin-like phospholipase; Patatin-like phospholipase; Patatin-like phospholipase; Patatin-like phospholipase; Patatin-like phospholipase; Patatin-like phospholipase; Patatin-like phospholipase	IPR002641; IPR002641; IPR002641; IPR002641; IPR002641; IPR002641; IPR002641; IPR002641; IPR002641; IPR002641; IPR002641	Patatin-like phospholipase domain; Patatin-like phospholipase domain; Patatin-like phospholipase domain; Patatin-like phospholipase domain; Patatin-like phospholipase domain; Patatin-like phospholipase domain; Patatin-like phospholipase domain; Patatin-like phospholipase domain; Patatin-like phospholipase domain; Patatin-like phospholipase domain; Patatin-like phospholipase domain
hsd_id_Theobroma_cacao_684	XP_007017353.1; XP_017970853.1; XP_017984522.1; XP_007028679.1; XP_017970147.1; XP_007037756.1; XP_017980856.1; XP_017976789.1; XP_007047839.2; XP_017978139.1	230; 252; 247; 282; 261; 249; 232; 238; 234; 234	Pfam	PF04759; PF04759; PF04759; PF04759; PF04759; PF04759; PF04759; PF04759; PF04759; PF04759	Protein of unknown function, DUF617; Protein of unknown function, DUF617; Protein of unknown function, DUF617; Protein of unknown function, DUF617; Protein of unknown function, DUF617; Protein of unknown function, DUF617; Protein of unknown function, DUF617; Protein of unknown function, DUF617; Protein of unknown function, DUF617; Protein of unknown function, DUF617	IPR006460; IPR006460; IPR006460; IPR006460; IPR006460; IPR006460; IPR006460; IPR006460; IPR006460; IPR006460	Protein MIZU-KUSSEI 1-like, plant; Protein MIZU-KUSSEI 1-like, plant; Protein MIZU-KUSSEI 1-like, plant; Protein MIZU-KUSSEI 1-like, plant; Protein MIZU-KUSSEI 1-like, plant; Protein MIZU-KUSSEI 1-like, plant; Protein MIZU-KUSSEI 1-like, plant; Protein MIZU-KUSSEI 1-like, plant; Protein MIZU-KUSSEI 1-like, plant; Protein MIZU-KUSSEI 1-like, plant
hsd_id_Theobroma_cacao_685	XP_007017362.2; XP_007047173.2; XP_007048387.2; XP_007030848.2; XP_007034672.2	767; 722; 668; 662; 677	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_686	XP_007017371.2; XP_007049166.1; XP_007025347.1; XP_017973489.1; XP_007042667.1; XP_017971869.1; XP_007033103.2	548; 520; 524; 530; 530; 536; 543	Pfam	PF00860; PF00860; PF00860; PF00860; PF00860; PF00860; PF00860	Permease family; Permease family; Permease family; Permease family; Permease family; Permease family; Permease family	IPR006043; IPR006043; IPR006043; IPR006043; IPR006043; IPR006043; IPR006043	Nucleobase cation symporter 2 family; Nucleobase cation symporter 2 family; Nucleobase cation symporter 2 family; Nucleobase cation symporter 2 family; Nucleobase cation symporter 2 family; Nucleobase cation symporter 2 family; Nucleobase cation symporter 2 family
hsd_id_Theobroma_cacao_687	XP_007017386.2; XP_007017968.2; XP_007017969.1; XP_017970129.1; XP_017970106.1	520; 521; 516; 524; 502	Pfam	PF01490; PF01490; PF01490; PF01490; PF01490	Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein	IPR013057; IPR013057; IPR013057; IPR013057; IPR013057	Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain
hsd_id_Theobroma_cacao_688	XP_007017393.2; XP_017969375.1	942; 944	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_689	XP_007017403.2; XP_017970337.1; XP_007017417.2; XP_017980925.1; XP_017974279.1; XP_017980808.1; XP_017981216.1; XP_007017404.2; XP_017981215.1; XP_007017407.2; XP_017980845.1; XP_007017411.2; XP_017974183.1; XP_017969883.1; XP_017974201.1	527; 533; 528; 526; 533; 522; 523; 527; 529; 522; 525; 525; 522; 527; 491	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_690	XP_007017423.2; XP_007041374.2	466; 464	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_691	XP_007017426.2; XP_017970543.1	531; 480	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_692	XP_007017436.1; XP_017971678.1	535; 592	Pfam	PF01485; PF01485	IBR domain, a half RING-finger domain; IBR domain, a half RING-finger domain	IPR002867; IPR002867	IBR domain; IBR domain
hsd_id_Theobroma_cacao_693	XP_007017441.2; XP_017971872.1; XP_017970123.1; XP_007042719.1; XP_017972936.1; XP_017969949.1; XP_007051759.1; XP_017969903.1; XP_017978159.1; XP_007045633.2; XP_017978112.1; XP_017977977.1; XP_007018127.2; XP_007018129.2; XP_007048896.2; XP_007048894.2	482; 509; 520; 498; 496; 491; 506; 490; 512; 504; 515; 519; 493; 489; 553; 506	Pfam	PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554	MatE; MatE; MatE; MatE; MatE; MatE; MatE; MatE; MatE; MatE; MatE; MatE; MatE; MatE; MatE; MatE	IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528	Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein
hsd_id_Theobroma_cacao_694	XP_007017446.2; XP_017969728.1	615; 634	Pfam	PF00069, PF01476; PF01476, PF00069	Protein kinase domain, LysM domain; LysM domain, Protein kinase domain	IPR000719, IPR018392; IPR018392, IPR000719	Protein kinase domain, LysM domain; LysM domain, Protein kinase domain
hsd_id_Theobroma_cacao_695	XP_007017452.2; XP_007047034.2	298; 283	Pfam	PF01151; PF01151	GNS1/SUR4 family; GNS1/SUR4 family	IPR002076; IPR002076	ELO family; ELO family
hsd_id_Theobroma_cacao_696	XP_007017453.1; XP_007042726.2	381; 372	Pfam	PF01553, PF16076; PF16076, PF01553	Acyltransferase, Acyltransferase C-terminus; Acyltransferase C-terminus, Acyltransferase	IPR002123, IPR032098; IPR032098, IPR002123	Phospholipid/glycerol acyltransferase, Acyltransferase, C-terminal domain; Acyltransferase, C-terminal domain, Phospholipid/glycerol acyltransferase
hsd_id_Theobroma_cacao_697	XP_007017461.2; XP_017973936.1	224; 230	Pfam	PF13867; PF13867	Sin3 binding region of histone deacetylase complex subunit SAP30; Sin3 binding region of histone deacetylase complex subunit SAP30	IPR025718; IPR025718	Histone deacetylase complex subunit SAP30, Sin3 binding domain; Histone deacetylase complex subunit SAP30, Sin3 binding domain
hsd_id_Theobroma_cacao_698	XP_007017466.1; XP_007047018.2; XP_017979214.1; XP_017976358.1	311; 320; 214; 168	Pfam	PF05687; PF05687; PF05687; PF05687	BES1/BZR1 plant transcription factor, N-terminal; BES1/BZR1 plant transcription factor, N-terminal; BES1/BZR1 plant transcription factor, N-terminal; BES1/BZR1 plant transcription factor, N-terminal	IPR008540; IPR008540; IPR008540; IPR008540	BES1/BZR1 plant transcription factor, N-terminal; BES1/BZR1 plant transcription factor, N-terminal; BES1/BZR1 plant transcription factor, N-terminal; BES1/BZR1 plant transcription factor, N-terminal
hsd_id_Theobroma_cacao_699	XP_007017478.1; XP_017971893.1	428; 431	Pfam	PF03407; PF03407	Nucleotide-diphospho-sugar transferase; Nucleotide-diphospho-sugar transferase	IPR005069; IPR005069	Nucleotide-diphospho-sugar transferase; Nucleotide-diphospho-sugar transferase
hsd_id_Theobroma_cacao_700	XP_007017500.2; XP_007044367.2	211; 219	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_701	XP_007017505.2; XP_007046980.1	184; 180	Pfam	PF06708; PF06708	Protein of unknown function (DUF1195); Protein of unknown function (DUF1195)	IPR010608; IPR010608	Protein of unknown function DUF1195; Protein of unknown function DUF1195
hsd_id_Theobroma_cacao_702	XP_007017514.2; XP_017970683.1	464; 486	Pfam	PF00332, PF07983; PF00332, PF07983	Glycosyl hydrolases family 17, X8 domain; Glycosyl hydrolases family 17, X8 domain	IPR000490, IPR012946; IPR000490, IPR012946	Glycoside hydrolase family 17, X8 domain; Glycoside hydrolase family 17, X8 domain
hsd_id_Theobroma_cacao_703	XP_007017525.2; XP_007042200.2	313; 309	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_704	XP_007017540.2; XP_007031897.2	147; 191	Pfam	PF01016; PF01016	Ribosomal L27 protein; Ribosomal L27 protein	IPR001684; IPR001684	Ribosomal protein L27; Ribosomal protein L27
hsd_id_Theobroma_cacao_705	XP_007017547.2; XP_017969653.1	231; 217	Pfam	PF02545; PF02545	Maf-like protein; Maf-like protein	IPR003697; IPR003697	Nucleoside triphosphate pyrophosphatase Maf-like protein; Nucleoside triphosphate pyrophosphatase Maf-like protein
hsd_id_Theobroma_cacao_706	XP_007017566.2; XP_007046407.2	209; 205	Pfam	PF00571; PF00571	CBS domain; CBS domain	IPR000644; IPR000644	CBS domain; CBS domain
hsd_id_Theobroma_cacao_707	XP_007017568.2; XP_007046900.1; XP_017981743.1; XP_007041585.2; XP_017981075.1; XP_017975031.1; XP_017980663.1	413; 414; 405; 426; 424; 385; 386	Pfam	PF00646, PF01167; PF00646, PF01167; PF01167, PF00646; PF00646, PF01167; PF01167, PF00646; PF01167, PF00646; PF00646, PF01167	F-box domain, Tub family; F-box domain, Tub family; Tub family, F-box domain; F-box domain, Tub family; Tub family, F-box domain; Tub family, F-box domain; F-box domain, Tub family	IPR001810, IPR000007; IPR001810, IPR000007; IPR000007, IPR001810; IPR001810, IPR000007; IPR000007, IPR001810; IPR000007, IPR001810; IPR001810, IPR000007	F-box domain, Tubby, C-terminal; F-box domain, Tubby, C-terminal; Tubby, C-terminal, F-box domain; F-box domain, Tubby, C-terminal; Tubby, C-terminal, F-box domain; Tubby, C-terminal, F-box domain; F-box domain, Tubby, C-terminal
hsd_id_Theobroma_cacao_708	XP_007017570.1; XP_017982390.1; XP_017970331.1	340; 319; 338	Pfam	PF01095; PF01095; PF01095	Pectinesterase; Pectinesterase; Pectinesterase	IPR000070; IPR000070; IPR000070	Pectinesterase, catalytic; Pectinesterase, catalytic; Pectinesterase, catalytic
hsd_id_Theobroma_cacao_709	XP_007017573.2; XP_007042155.1; XP_007046890.2	308; 308; 325	Pfam	PF05368; PF05368; PF05368	NmrA-like family; NmrA-like family; NmrA-like family	IPR008030; IPR008030; IPR008030	NmrA-like domain; NmrA-like domain; NmrA-like domain
hsd_id_Theobroma_cacao_710	XP_007017575.1; XP_007046887.1; XP_017970833.1; XP_007047374.2	194; 190; 194; 202	Pfam	PF03248; PF03248; PF03248; PF03248	Rer1 family; Rer1 family; Rer1 family; Rer1 family	IPR004932; IPR004932; IPR004932; IPR004932	Retrieval of early ER protein Rer1; Retrieval of early ER protein Rer1; Retrieval of early ER protein Rer1; Retrieval of early ER protein Rer1
hsd_id_Theobroma_cacao_711	XP_007017586.2; XP_017985307.1	345; 366	Pfam	PF01370; PF01370	NAD dependent epimerase/dehydratase family; NAD dependent epimerase/dehydratase family	IPR001509; IPR001509	NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase
hsd_id_Theobroma_cacao_712	XP_007017589.1; XP_007046871.2; XP_007051341.1; XP_017974946.1	431; 433; 412; 482	Pfam	PF00150; PF00150; PF00150; PF00150	Cellulase (glycosyl hydrolase family 5); Cellulase (glycosyl hydrolase family 5); Cellulase (glycosyl hydrolase family 5); Cellulase (glycosyl hydrolase family 5)	IPR001547; IPR001547; IPR001547; IPR001547	Glycoside hydrolase, family 5; Glycoside hydrolase, family 5; Glycoside hydrolase, family 5; Glycoside hydrolase, family 5
hsd_id_Theobroma_cacao_713	XP_007017596.2; XP_017980859.1	488; 489	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_714	XP_007017613.2; XP_017979564.1; XP_007025886.2; XP_007045319.2; XP_017972135.1	425; 460; 466; 519; 394	Pfam	; ; ; ; 	; ; ; ; 	; ; ; ; 	; ; ; ; 
hsd_id_Theobroma_cacao_715	XP_007017628.2; XP_017981266.1	235; 265	Pfam	PF03798; PF03798	TLC domain; TLC domain	IPR006634; IPR006634	TRAM/LAG1/CLN8 homology domain; TRAM/LAG1/CLN8 homology domain
hsd_id_Theobroma_cacao_716	XP_007017632.2; XP_017983353.1	485; 482	Pfam	PF00534, PF16994; PF16994, PF00534	Glycosyl transferases group 1, Glycosyl-transferase family 4; Glycosyl-transferase family 4, Glycosyl transferases group 1	IPR001296, IPR041693; IPR041693, IPR001296	Glycosyl transferase, family 1, Glycosyl-transferase family 4_5; Glycosyl-transferase family 4_5, Glycosyl transferase, family 1
hsd_id_Theobroma_cacao_717	XP_007017641.1; XP_017969930.1	161; 161	Pfam	PF00179; PF00179	Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme	IPR000608; IPR000608	Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2
hsd_id_Theobroma_cacao_718	XP_007017654.2; XP_007046793.1	116; 118	Pfam	PF00085; PF00085	Thioredoxin; Thioredoxin	IPR013766; IPR013766	Thioredoxin domain; Thioredoxin domain
hsd_id_Theobroma_cacao_719	XP_007017656.2; XP_007042494.2; XP_007017153.1	438; 471; 466	Pfam	PF08246, PF00112, PF00396; PF00396, PF00112, PF08246; PF00112, PF00396, PF08246	Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease, Granulin; Granulin, Papain family cysteine protease, Cathepsin propeptide inhibitor domain (I29); Papain family cysteine protease, Granulin, Cathepsin propeptide inhibitor domain (I29)	IPR013201, IPR000668, IPR000118; IPR000118, IPR000668, IPR013201; IPR000668, IPR000118, IPR013201	Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal, Granulin; Granulin, Peptidase C1A, papain C-terminal, Cathepsin propeptide inhibitor domain (I29); Peptidase C1A, papain C-terminal, Granulin, Cathepsin propeptide inhibitor domain (I29)
hsd_id_Theobroma_cacao_720	XP_007017673.1; XP_007042074.2; XP_017982902.1	818; 821; 820	Pfam	PF01496; PF01496; PF01496	V-type ATPase 116kDa subunit family; V-type ATPase 116kDa subunit family; V-type ATPase 116kDa subunit family	IPR002490; IPR002490; IPR002490	V-type  ATPase, V0 complex, 116kDa subunit family; V-type  ATPase, V0 complex, 116kDa subunit family; V-type  ATPase, V0 complex, 116kDa subunit family
hsd_id_Theobroma_cacao_721	XP_007017677.1; XP_017969933.1; XP_007042072.2	306; 345; 212	Pfam	PF05142; PF05142; PF05142	Domain of unknown function (DUF702); Domain of unknown function (DUF702); Domain of unknown function (DUF702)	-; -; -	-; -; -
hsd_id_Theobroma_cacao_722	XP_007017678.2; XP_017971428.1; XP_007042068.2	1219; 1219; 1219	Pfam	PF06957, PF00400, PF04053; PF00400, PF04053, PF06957; PF00400, PF06957, PF04053	Coatomer (COPI) alpha subunit C-terminus, WD domain, G-beta repeat, Coatomer WD associated region; WD domain, G-beta repeat, Coatomer WD associated region, Coatomer (COPI) alpha subunit C-terminus; WD domain, G-beta repeat, Coatomer (COPI) alpha subunit C-terminus, Coatomer WD associated region	IPR010714, IPR001680, IPR006692; IPR001680, IPR006692, IPR010714; IPR001680, IPR010714, IPR006692	Coatomer, alpha subunit, C-terminal, WD40 repeat, Coatomer, WD associated region; WD40 repeat, Coatomer, WD associated region, Coatomer, alpha subunit, C-terminal; WD40 repeat, Coatomer, alpha subunit, C-terminal, Coatomer, WD associated region
hsd_id_Theobroma_cacao_723	XP_007017679.2; XP_017979453.1	409; 389	Pfam	PF03595; PF03595	Voltage-dependent anion channel; Voltage-dependent anion channel	IPR004695; IPR004695	Transporter protein SLAC1/Mae1/ Ssu1/TehA; Transporter protein SLAC1/Mae1/ Ssu1/TehA
hsd_id_Theobroma_cacao_724	XP_007017685.2; XP_017980396.1; XP_007033917.2; XP_007042065.2	365; 296; 239; 232	Pfam	PF00643; PF00643; PF00643; PF00643	B-box zinc finger; B-box zinc finger; B-box zinc finger; B-box zinc finger	IPR000315; IPR000315; IPR000315; IPR000315	B-box-type zinc finger; B-box-type zinc finger; B-box-type zinc finger; B-box-type zinc finger
hsd_id_Theobroma_cacao_725	XP_007017690.2; XP_017979702.1	668; 685	Pfam	PF05277; PF05277	Protein of unknown function (DUF726); Protein of unknown function (DUF726)	IPR007941; IPR007941	Protein of unknown function DUF726; Protein of unknown function DUF726
hsd_id_Theobroma_cacao_726	XP_007017699.2; XP_007046741.2	1138; 1127	Pfam	PF08263, PF00069, PF13855, PF13516; PF13855, PF08263, PF00069, PF13516	Leucine rich repeat N-terminal domain, Protein kinase domain, Leucine rich repeat, Leucine Rich repeat; Leucine rich repeat, Leucine rich repeat N-terminal domain, Protein kinase domain, Leucine Rich repeat	IPR013210, IPR000719, IPR001611, IPR001611; IPR001611, IPR013210, IPR000719, IPR001611	Leucine-rich repeat-containing N-terminal, plant-type, Protein kinase domain, Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Protein kinase domain, Leucine-rich repeat
hsd_id_Theobroma_cacao_727	XP_007017716.2; XP_017980936.1; XP_007017717.2; XP_007030653.2; XP_017972330.1; XP_007046239.2	546; 546; 546; 513; 569; 557	Pfam	PF07250, PF09118; PF07250, PF09118; PF09118, PF07250; PF09118, PF07250; PF09118, PF07250; PF09118, PF07250	Glyoxal oxidase N-terminus, Domain of unknown function (DUF1929); Glyoxal oxidase N-terminus, Domain of unknown function (DUF1929); Domain of unknown function (DUF1929), Glyoxal oxidase N-terminus; Domain of unknown function (DUF1929), Glyoxal oxidase N-terminus; Domain of unknown function (DUF1929), Glyoxal oxidase N-terminus; Domain of unknown function (DUF1929), Glyoxal oxidase N-terminus	IPR009880, IPR015202; IPR009880, IPR015202; IPR015202, IPR009880; IPR015202, IPR009880; IPR015202, IPR009880; IPR015202, IPR009880	Glyoxal oxidase, N-terminal, Galactose oxidase-like, Early set domain; Glyoxal oxidase, N-terminal, Galactose oxidase-like, Early set domain; Galactose oxidase-like, Early set domain, Glyoxal oxidase, N-terminal; Galactose oxidase-like, Early set domain, Glyoxal oxidase, N-terminal; Galactose oxidase-like, Early set domain, Glyoxal oxidase, N-terminal; Galactose oxidase-like, Early set domain, Glyoxal oxidase, N-terminal
hsd_id_Theobroma_cacao_728	XP_007017722.1; XP_007042009.2; XP_007040772.1; XP_007045436.2	336; 310; 236; 282	Pfam	PF06217; PF06217; PF06217; PF06217	GAGA binding protein-like family; GAGA binding protein-like family; GAGA binding protein-like family; GAGA binding protein-like family	IPR010409; IPR010409; IPR010409; IPR010409	GAGA-binding transcriptional activator; GAGA-binding transcriptional activator; GAGA-binding transcriptional activator; GAGA-binding transcriptional activator
hsd_id_Theobroma_cacao_729	XP_007017723.1; XP_017971734.1	561; 591	Pfam	PF00170; PF00170	bZIP transcription factor; bZIP transcription factor	IPR004827; IPR004827	Basic-leucine zipper domain; Basic-leucine zipper domain
hsd_id_Theobroma_cacao_730	XP_007017768.1; XP_007034900.2	483; 465	Pfam	PF14306, PF01747; PF01747, PF14306	PUA-like domain, ATP-sulfurylase; ATP-sulfurylase, PUA-like domain	IPR025980, IPR024951; IPR024951, IPR025980	ATP-sulfurylase PUA-like domain, Sulphate adenylyltransferase catalytic domain; Sulphate adenylyltransferase catalytic domain, ATP-sulfurylase PUA-like domain
hsd_id_Theobroma_cacao_731	XP_007017776.1; XP_007046716.2	526; 527	Pfam	PF00759; PF00759	Glycosyl hydrolase family 9; Glycosyl hydrolase family 9	IPR001701; IPR001701	Glycoside hydrolase family 9; Glycoside hydrolase family 9
hsd_id_Theobroma_cacao_732	XP_007017790.2; XP_007018982.2; XP_017979959.1; XP_007025908.2	434; 441; 438; 411	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_733	XP_007017792.2; XP_017971949.1	211; 216	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_734	XP_007017794.1; XP_007018627.1; XP_007043125.1	142; 161; 161	Pfam	PF01217; PF01217; PF01217	Clathrin adaptor complex small chain; Clathrin adaptor complex small chain; Clathrin adaptor complex small chain	IPR022775; IPR022775; IPR022775	AP complex, mu/sigma subunit; AP complex, mu/sigma subunit; AP complex, mu/sigma subunit
hsd_id_Theobroma_cacao_735	XP_007017802.2; XP_007041942.1; XP_017971438.1	272; 272; 271	Pfam	PF00810; PF00810; PF00810	ER lumen protein retaining receptor; ER lumen protein retaining receptor; ER lumen protein retaining receptor	IPR000133; IPR000133; IPR000133	ER lumen protein retaining receptor; ER lumen protein retaining receptor; ER lumen protein retaining receptor
hsd_id_Theobroma_cacao_736	XP_007017806.2; XP_007012128.1	268; 202	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_737	XP_007017812.2; XP_007020255.1; XP_007048589.2	617; 652; 624	Pfam	PF11961, PF05003; PF05003, PF11961; PF11961, PF05003	Domain of unknown function (DUF3475), Protein of unknown function (DUF668); Protein of unknown function (DUF668), Domain of unknown function (DUF3475); Domain of unknown function (DUF3475), Protein of unknown function (DUF668)	IPR021864, IPR007700; IPR007700, IPR021864; IPR021864, IPR007700	Domain of unknown function DUF3475, Domain of unknown function DUF668; Domain of unknown function DUF668, Domain of unknown function DUF3475; Domain of unknown function DUF3475, Domain of unknown function DUF668
hsd_id_Theobroma_cacao_738	XP_007017817.2; XP_017978306.1; XP_017978649.1	392; 406; 376	Pfam	PF00175; PF00175; PF00175	Oxidoreductase NAD-binding domain; Oxidoreductase NAD-binding domain; Oxidoreductase NAD-binding domain	IPR001433; IPR001433; IPR001433	Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD/NAD(P)-binding
hsd_id_Theobroma_cacao_739	XP_007017846.1; XP_017971016.1; XP_017977308.1; XP_017985125.1	539; 538; 549; 510	Pfam	PF17047, PF00168; PF17047, PF00168; PF17047, PF00168; PF17047, PF00168	Synaptotagmin-like mitochondrial-lipid-binding domain, C2 domain; Synaptotagmin-like mitochondrial-lipid-binding domain, C2 domain; Synaptotagmin-like mitochondrial-lipid-binding domain, C2 domain; Synaptotagmin-like mitochondrial-lipid-binding domain, C2 domain	IPR039010, IPR000008; IPR039010, IPR000008; IPR039010, IPR000008; IPR039010, IPR000008	Synaptotagmin, SMP domain, C2 domain; Synaptotagmin, SMP domain, C2 domain; Synaptotagmin, SMP domain, C2 domain; Synaptotagmin, SMP domain, C2 domain
hsd_id_Theobroma_cacao_740	XP_007017852.1; XP_007046638.1; XP_007041844.1; XP_017978060.1; XP_007036140.1; XP_017983092.1; XP_017969592.1	197; 197; 198; 197; 210; 210; 206	Pfam	PF00071; PF00071; PF00071; PF00071; PF00071; PF00071; PF00071	Ras family; Ras family; Ras family; Ras family; Ras family; Ras family; Ras family	IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806; IPR001806	Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase; Small GTPase
hsd_id_Theobroma_cacao_741	XP_007017876.1; XP_007048215.2; XP_017981533.1; XP_007047728.2; XP_007039280.2; XP_017981511.1; XP_007042532.2; XP_017976318.1	359; 359; 360; 362; 361; 395; 356; 353	Pfam	PF00107, PF08240; PF00107, PF08240; PF00107, PF08240; PF08240, PF00107; PF00107, PF08240; PF08240, PF00107; PF08240, PF00107; PF08240, PF00107	Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase	IPR013149, IPR013154; IPR013149, IPR013154; IPR013149, IPR013154; IPR013154, IPR013149; IPR013149, IPR013154; IPR013154, IPR013149; IPR013154, IPR013149; IPR013154, IPR013149	Alcohol dehydrogenase, C-terminal, Alcohol dehydrogenase, N-terminal; Alcohol dehydrogenase, C-terminal, Alcohol dehydrogenase, N-terminal; Alcohol dehydrogenase, C-terminal, Alcohol dehydrogenase, N-terminal; Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, C-terminal, Alcohol dehydrogenase, N-terminal; Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal
hsd_id_Theobroma_cacao_742	XP_007017880.2; XP_007046611.2; XP_017973010.1	316; 316; 324	Pfam	PF00141; PF00141; PF00141	Peroxidase; Peroxidase; Peroxidase	IPR002016; IPR002016; IPR002016	Haem peroxidase; Haem peroxidase; Haem peroxidase
hsd_id_Theobroma_cacao_743	XP_007017889.1; XP_017983677.1	164; 174	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_744	XP_007017895.1; XP_007036767.1	487; 488	Pfam	PF00006, PF02874; PF02874, PF00006	ATP synthase alpha/beta family, nucleotide-binding domain, ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, beta-barrel domain, ATP synthase alpha/beta family, nucleotide-binding domain	IPR000194, IPR004100; IPR004100, IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain, ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain
hsd_id_Theobroma_cacao_745	XP_007017902.1; XP_007046593.2; XP_007033989.2	287; 283; 286	Pfam	PF13640; PF13640; PF13640	2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily	IPR044862; IPR044862; IPR044862	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain; Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain; Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain
hsd_id_Theobroma_cacao_746	XP_007017916.1; XP_007041737.2	443; 443	Pfam	PF07690; PF07690	Major Facilitator Superfamily; Major Facilitator Superfamily	IPR011701; IPR011701	Major facilitator superfamily; Major facilitator superfamily
hsd_id_Theobroma_cacao_747	XP_007017923.2; XP_007023836.2; XP_007017924.2; XP_017976316.1; XP_017976315.1	430; 413; 411; 410; 409	Pfam	PF00278, PF02784; PF02784, PF00278; PF02784, PF00278; PF00278, PF02784; PF02784, PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain, Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain, Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain, Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, C-terminal sheet domain, Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain, Pyridoxal-dependent decarboxylase, C-terminal sheet domain	IPR022643, IPR022644; IPR022644, IPR022643; IPR022644, IPR022643; IPR022643, IPR022644; IPR022644, IPR022643	Orn/DAP/Arg decarboxylase 2, C-terminal, Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal, Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal, Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal, Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal, Orn/DAP/Arg decarboxylase 2, C-terminal
hsd_id_Theobroma_cacao_748	XP_007017926.2; XP_017971694.1; XP_007046574.2; XP_017981067.1	546; 576; 576; 553	Pfam	PF07714; PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_749	XP_007017928.2; XP_007021979.2; XP_017970289.1	799; 898; 889	Pfam	PF00924; PF00924; PF00924	Mechanosensitive ion channel; Mechanosensitive ion channel; Mechanosensitive ion channel	IPR006685; IPR006685; IPR006685	Mechanosensitive ion channel MscS; Mechanosensitive ion channel MscS; Mechanosensitive ion channel MscS
hsd_id_Theobroma_cacao_750	XP_007017932.2; XP_007046569.2	184; 179	Pfam	PF00581; PF00581	Rhodanese-like domain; Rhodanese-like domain	IPR001763; IPR001763	Rhodanese-like domain; Rhodanese-like domain
hsd_id_Theobroma_cacao_751	XP_007017939.2; XP_007046567.2	204; 202	Pfam	PF13716; PF13716	Divergent CRAL/TRIO domain; Divergent CRAL/TRIO domain	IPR001251; IPR001251	CRAL-TRIO lipid binding domain; CRAL-TRIO lipid binding domain
hsd_id_Theobroma_cacao_752	XP_007017945.2; XP_017981403.1	774; 734	Pfam	PF00326, PF02897; PF00326, PF02897	Prolyl oligopeptidase family, Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family, Prolyl oligopeptidase, N-terminal beta-propeller domain	IPR001375, IPR023302; IPR001375, IPR023302	Peptidase S9, prolyl oligopeptidase, catalytic domain, Peptidase S9A, N-terminal domain; Peptidase S9, prolyl oligopeptidase, catalytic domain, Peptidase S9A, N-terminal domain
hsd_id_Theobroma_cacao_753	XP_007017971.2; XP_007017972.2	550; 549	Pfam	PF00501, PF13193; PF13193, PF00501	AMP-binding enzyme, AMP-binding enzyme C-terminal domain; AMP-binding enzyme C-terminal domain, AMP-binding enzyme	IPR000873, IPR025110; IPR025110, IPR000873	AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain; AMP-binding enzyme, C-terminal domain, AMP-dependent synthetase/ligase
hsd_id_Theobroma_cacao_754	XP_007017986.1; XP_007021294.2	783; 751	Pfam	PF01593, PF04433; PF04433, PF01593	Flavin containing amine oxidoreductase, SWIRM domain; SWIRM domain, Flavin containing amine oxidoreductase	IPR002937, IPR007526; IPR007526, IPR002937	Amine oxidase, SWIRM domain; SWIRM domain, Amine oxidase
hsd_id_Theobroma_cacao_755	XP_007017987.2; XP_007044097.1	702; 694	Pfam	PF17862, PF01434, PF00004; PF17862, PF00004, PF01434	AAA+ lid domain, Peptidase family M41, ATPase family associated with various cellular activities (AAA); AAA+ lid domain, ATPase family associated with various cellular activities (AAA), Peptidase family M41	IPR041569, IPR000642, IPR003959; IPR041569, IPR003959, IPR000642	AAA ATPase, AAA+ lid domain, Peptidase M41, ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain, ATPase, AAA-type, core, Peptidase M41
hsd_id_Theobroma_cacao_756	XP_007018015.2; XP_017980292.1; XP_017974182.1; XP_007046546.2; XP_017974986.1; XP_007019243.2; XP_017975636.1	555; 588; 586; 553; 564; 560; 559	Pfam	PF00501, PF13193; PF00501, PF13193; PF00501, PF13193; PF00501, PF13193; PF00501, PF13193; PF00501, PF13193; PF00501, PF13193	AMP-binding enzyme, AMP-binding enzyme C-terminal domain; AMP-binding enzyme, AMP-binding enzyme C-terminal domain; AMP-binding enzyme, AMP-binding enzyme C-terminal domain; AMP-binding enzyme, AMP-binding enzyme C-terminal domain; AMP-binding enzyme, AMP-binding enzyme C-terminal domain; AMP-binding enzyme, AMP-binding enzyme C-terminal domain; AMP-binding enzyme, AMP-binding enzyme C-terminal domain	IPR000873, IPR025110; IPR000873, IPR025110; IPR000873, IPR025110; IPR000873, IPR025110; IPR000873, IPR025110; IPR000873, IPR025110; IPR000873, IPR025110	AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain; AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain; AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain; AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain; AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain; AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain; AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain
hsd_id_Theobroma_cacao_757	XP_007018019.2; XP_007027647.2	886; 882	Pfam	PF00128, PF02806, PF02922; PF02922, PF00128, PF02806	Alpha amylase, catalytic domain, Alpha amylase, C-terminal all-beta domain, Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Carbohydrate-binding module 48 (Isoamylase N-terminal domain), Alpha amylase, catalytic domain, Alpha amylase, C-terminal all-beta domain	IPR006047, IPR006048, IPR004193; IPR004193, IPR006047, IPR006048	Glycosyl hydrolase, family 13, catalytic domain, Alpha-amylase/branching enzyme, C-terminal all beta, Glycoside hydrolase, family 13, N-terminal; Glycoside hydrolase, family 13, N-terminal, Glycosyl hydrolase, family 13, catalytic domain, Alpha-amylase/branching enzyme, C-terminal all beta
hsd_id_Theobroma_cacao_758	XP_007018034.2; XP_007046520.1	492; 492	Pfam	PF00199, PF06628; PF00199, PF06628	Catalase, Catalase-related immune-responsive; Catalase, Catalase-related immune-responsive	IPR011614, IPR010582; IPR011614, IPR010582	Catalase core domain, Catalase immune-responsive domain; Catalase core domain, Catalase immune-responsive domain
hsd_id_Theobroma_cacao_759	XP_007018039.2; XP_017971157.1	1288; 1323	Pfam	PF02460, PF16414; PF02460, PF16414	Patched family, Niemann-Pick C1 N terminus; Patched family, Niemann-Pick C1 N terminus	IPR003392, IPR032190; IPR003392, IPR032190	Protein patched/dispatched, Niemann-Pick C1, N-terminal; Protein patched/dispatched, Niemann-Pick C1, N-terminal
hsd_id_Theobroma_cacao_760	XP_007018062.2; XP_017981738.1	706; 704	Pfam	PF00439; PF00439	Bromodomain; Bromodomain	IPR001487; IPR001487	Bromodomain; Bromodomain
hsd_id_Theobroma_cacao_761	XP_007018064.2; XP_017969979.1	267; 306	Pfam	PF05742; PF05742	Transport and Golgi organisation 2; Transport and Golgi organisation 2	IPR008551; IPR008551	Transport and Golgi organisation protein 2; Transport and Golgi organisation protein 2
hsd_id_Theobroma_cacao_762	XP_007018072.1; XP_017981468.1	228; 254	Pfam	PF00046; PF00046	Homeodomain; Homeodomain	IPR001356; IPR001356	Homeobox domain; Homeobox domain
hsd_id_Theobroma_cacao_763	XP_007018101.2; XP_017981858.1	886; 926	Pfam	PF06479, PF00069; PF06479, PF00069	Ribonuclease 2-5A, Protein kinase domain; Ribonuclease 2-5A, Protein kinase domain	IPR010513, IPR000719; IPR010513, IPR000719	KEN domain, Protein kinase domain; KEN domain, Protein kinase domain
hsd_id_Theobroma_cacao_764	XP_007018105.2; XP_007032095.1	452; 404	Pfam	PF00044, PF02800; PF00044, PF02800	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain, Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain, Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	IPR020828, IPR020829; IPR020828, IPR020829	Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain, Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain, Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
hsd_id_Theobroma_cacao_765	XP_007018124.2; XP_007041380.2	420; 401	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_766	XP_007018125.2; XP_007042883.2; XP_007042884.2	345; 366; 366	Pfam	PF03171, PF14226; PF03171, PF14226; PF14226, PF03171	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily	IPR044861, IPR026992; IPR044861, IPR026992; IPR026992, IPR044861	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain
hsd_id_Theobroma_cacao_767	XP_007018134.2; XP_017981125.1; XP_017970918.1; XP_007042881.2	356; 345; 419; 338	Pfam	PF16913; PF16913; PF16913; PF16913	Purine nucleobase transmembrane transport; Purine nucleobase transmembrane transport; Purine nucleobase transmembrane transport; Purine nucleobase transmembrane transport	-; -; -; -	-; -; -; -
hsd_id_Theobroma_cacao_768	XP_007018144.2; XP_017970916.1	469; 468	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_769	XP_007018146.2; XP_007047827.1	136; 121	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_770	XP_007018163.2; XP_007047822.2; XP_007051348.2	281; 311; 231	Pfam	PF02893; PF02893; PF02893	GRAM domain; GRAM domain; GRAM domain	IPR004182; IPR004182; IPR004182	GRAM domain; GRAM domain; GRAM domain
hsd_id_Theobroma_cacao_771	XP_007018168.1; XP_007052203.1	185; 123	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_772	XP_007018180.2; XP_007047815.1	356; 369	Pfam	PF02984, PF00134; PF00134, PF02984	Cyclin, C-terminal domain, Cyclin, N-terminal domain; Cyclin, N-terminal domain, Cyclin, C-terminal domain	IPR004367, IPR006671; IPR006671, IPR004367	Cyclin, C-terminal domain, Cyclin, N-terminal; Cyclin, N-terminal, Cyclin, C-terminal domain
hsd_id_Theobroma_cacao_773	XP_007018183.1; XP_017975049.1; XP_007042905.1; XP_007018723.1; XP_017981198.1; XP_007025386.2; XP_017971117.1; XP_007048686.1	252; 262; 261; 267; 253; 258; 265; 275	Pfam	PF00244; PF00244; PF00244; PF00244; PF00244; PF00244; PF00244; PF00244	14-3-3 protein; 14-3-3 protein; 14-3-3 protein; 14-3-3 protein; 14-3-3 protein; 14-3-3 protein; 14-3-3 protein; 14-3-3 protein	IPR023410; IPR023410; IPR023410; IPR023410; IPR023410; IPR023410; IPR023410; IPR023410	14-3-3 domain; 14-3-3 domain; 14-3-3 domain; 14-3-3 domain; 14-3-3 domain; 14-3-3 domain; 14-3-3 domain; 14-3-3 domain
hsd_id_Theobroma_cacao_774	XP_007018188.2; XP_017969636.1	1249; 1171	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_775	XP_007018195.2; XP_017982761.1	910; 875	Pfam	PF14389, PF00620, PF00169; PF00620, PF14389, PF00169	Leucine-zipper of ternary complex factor MIP1, RhoGAP domain, PH domain; RhoGAP domain, Leucine-zipper of ternary complex factor MIP1, PH domain	IPR025757, IPR000198, IPR001849; IPR000198, IPR025757, IPR001849	Ternary complex factor MIP1, leucine-zipper, Rho GTPase-activating protein domain, Pleckstrin homology domain; Rho GTPase-activating protein domain, Ternary complex factor MIP1, leucine-zipper, Pleckstrin homology domain
hsd_id_Theobroma_cacao_776	XP_007018201.2; XP_007047807.1; XP_007042872.2	318; 321; 319	Pfam	PF00153; PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_777	XP_007018209.2; XP_017976146.1; XP_017975810.1; XP_007040019.1; XP_017984146.1; XP_007030480.1; XP_007048865.1; XP_007043111.2; XP_017981391.1; XP_007039519.1	308; 304; 273; 302; 339; 297; 257; 292; 286; 292	Pfam	PF03479; PF03479; PF03479; PF03479; PF03479; PF03479; PF03479; PF03479; PF03479; PF03479	Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain	IPR005175; IPR005175; IPR005175; IPR005175; IPR005175; IPR005175; IPR005175; IPR005175; IPR005175; IPR005175	PPC domain; PPC domain; PPC domain; PPC domain; PPC domain; PPC domain; PPC domain; PPC domain; PPC domain; PPC domain
hsd_id_Theobroma_cacao_778	XP_007018211.2; XP_007042851.2; XP_007044647.2; XP_007031477.2; XP_007036209.2; XP_007036210.2	325; 299; 279; 338; 260; 262	Pfam	PF00484; PF00484; PF00484; PF00484; PF00484; PF00484	Carbonic anhydrase; Carbonic anhydrase; Carbonic anhydrase; Carbonic anhydrase; Carbonic anhydrase; Carbonic anhydrase	IPR001765; IPR001765; IPR001765; IPR001765; IPR001765; IPR001765	Carbonic anhydrase; Carbonic anhydrase; Carbonic anhydrase; Carbonic anhydrase; Carbonic anhydrase; Carbonic anhydrase
hsd_id_Theobroma_cacao_779	XP_007018222.2; XP_007047788.2; XP_017975346.1	707; 744; 744	Pfam	PF00924; PF00924; PF00924	Mechanosensitive ion channel; Mechanosensitive ion channel; Mechanosensitive ion channel	IPR006685; IPR006685; IPR006685	Mechanosensitive ion channel MscS; Mechanosensitive ion channel MscS; Mechanosensitive ion channel MscS
hsd_id_Theobroma_cacao_780	XP_007018229.2; XP_007047781.2	976; 1031	Pfam	PF07765; PF07765	KIP1-like protein; KIP1-like protein	IPR011684; IPR011684	Protein Networked (NET), actin-binding (NAB) domain; Protein Networked (NET), actin-binding (NAB) domain
hsd_id_Theobroma_cacao_781	XP_007018247.1; XP_007018248.2	116; 115	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_782	XP_007018259.2; XP_007042820.1; XP_007023733.2; XP_017981187.1; XP_017970974.1	299; 313; 309; 371; 353	Pfam	PF06203, PF06200, PF00320; PF00320, PF06203, PF06200; PF06203, PF00320, PF06200; PF06200, PF00320, PF06203; PF00320, PF06200, PF06203	CCT motif, tify domain, GATA zinc finger; GATA zinc finger, CCT motif, tify domain; CCT motif, GATA zinc finger, tify domain; tify domain, GATA zinc finger, CCT motif; GATA zinc finger, tify domain, CCT motif	IPR010402, IPR010399, IPR000679; IPR000679, IPR010402, IPR010399; IPR010402, IPR000679, IPR010399; IPR010399, IPR000679, IPR010402; IPR000679, IPR010399, IPR010402	CCT domain, Tify domain, Zinc finger, GATA-type; Zinc finger, GATA-type, CCT domain, Tify domain; CCT domain, Zinc finger, GATA-type, Tify domain; Tify domain, Zinc finger, GATA-type, CCT domain; Zinc finger, GATA-type, Tify domain, CCT domain
hsd_id_Theobroma_cacao_783	XP_007018275.1; XP_017983858.1	425; 449	Pfam	PF08627; PF08627	CRT-like, chloroquine-resistance transporter-like; CRT-like, chloroquine-resistance transporter-like	IPR013936; IPR013936	Chloroquine-resistance transporter-like; Chloroquine-resistance transporter-like
hsd_id_Theobroma_cacao_784	XP_007018276.2; XP_007042812.1	148; 148	Pfam	PF06747; PF06747	CHCH domain; CHCH domain	IPR010625; IPR010625	CHCH; CHCH
hsd_id_Theobroma_cacao_785	XP_007018281.2; XP_007020477.2	3674; 3773	Pfam	PF14377, PF00627, PF06025, PF06012, PF00632; PF00632, PF06025, PF06012, PF14377, PF00627	Ubiquitin binding region, UBA/TS-N domain, Domain of Unknown Function (DUF913), Domain of Unknown Function (DUF908), HECT-domain (ubiquitin-transferase); HECT-domain (ubiquitin-transferase), Domain of Unknown Function (DUF913), Domain of Unknown Function (DUF908), Ubiquitin binding region, UBA/TS-N domain	IPR025527, IPR015940, IPR010314, IPR010309, IPR000569; IPR000569, IPR010314, IPR010309, IPR025527, IPR015940	HUWE1/Rev1, ubiquitin binding region, Ubiquitin-associated domain, E3 ubiquitin ligase, domain of unknown function DUF913, E3 ubiquitin ligase, domain of unknown function DUF908, HECT domain; HECT domain, E3 ubiquitin ligase, domain of unknown function DUF913, E3 ubiquitin ligase, domain of unknown function DUF908, HUWE1/Rev1, ubiquitin binding region, Ubiquitin-associated domain
hsd_id_Theobroma_cacao_786	XP_007018290.2; XP_017981488.1; XP_017981575.1; XP_017981489.1; XP_017981487.1; XP_017970644.1	642; 645; 627; 648; 675; 677	Pfam	PF14683, PF06045, PF14686; PF06045, PF14683, PF14686; PF14686, PF06045, PF14683; PF06045, PF14686, PF14683; PF06045, PF14683, PF14686; PF06045, PF14683, PF14686	Polysaccharide lyase family 4, domain III, Rhamnogalacturonate lyase family, Polysaccharide lyase family 4, domain II; Rhamnogalacturonate lyase family, Polysaccharide lyase family 4, domain III, Polysaccharide lyase family 4, domain II; Polysaccharide lyase family 4, domain II, Rhamnogalacturonate lyase family, Polysaccharide lyase family 4, domain III; Rhamnogalacturonate lyase family, Polysaccharide lyase family 4, domain II, Polysaccharide lyase family 4, domain III; Rhamnogalacturonate lyase family, Polysaccharide lyase family 4, domain III, Polysaccharide lyase family 4, domain II; Rhamnogalacturonate lyase family, Polysaccharide lyase family 4, domain III, Polysaccharide lyase family 4, domain II	IPR029411, IPR010325, IPR029413; IPR010325, IPR029411, IPR029413; IPR029413, IPR010325, IPR029411; IPR010325, IPR029413, IPR029411; IPR010325, IPR029411, IPR029413; IPR010325, IPR029411, IPR029413	Rhamnogalacturonan lyase, domain III, Rhamnogalacturonate lyase, Rhamnogalacturonan lyase, domain II; Rhamnogalacturonate lyase, Rhamnogalacturonan lyase, domain III, Rhamnogalacturonan lyase, domain II; Rhamnogalacturonan lyase, domain II, Rhamnogalacturonate lyase, Rhamnogalacturonan lyase, domain III; Rhamnogalacturonate lyase, Rhamnogalacturonan lyase, domain II, Rhamnogalacturonan lyase, domain III; Rhamnogalacturonate lyase, Rhamnogalacturonan lyase, domain III, Rhamnogalacturonan lyase, domain II; Rhamnogalacturonate lyase, Rhamnogalacturonan lyase, domain III, Rhamnogalacturonan lyase, domain II
hsd_id_Theobroma_cacao_787	XP_007018304.2; XP_017971203.1; XP_017981773.1; XP_017973958.1; XP_007026362.2; XP_017980037.1; XP_007039134.2; XP_007020440.2; XP_007020441.1; XP_007026393.1	738; 750; 752; 762; 739; 741; 732; 753; 751; 754	Pfam	PF03169; PF03169; PF03169; PF03169; PF03169; PF03169; PF03169; PF03169; PF03169; PF03169	OPT oligopeptide transporter protein; OPT oligopeptide transporter protein; OPT oligopeptide transporter protein; OPT oligopeptide transporter protein; OPT oligopeptide transporter protein; OPT oligopeptide transporter protein; OPT oligopeptide transporter protein; OPT oligopeptide transporter protein; OPT oligopeptide transporter protein; OPT oligopeptide transporter protein	IPR004813; IPR004813; IPR004813; IPR004813; IPR004813; IPR004813; IPR004813; IPR004813; IPR004813; IPR004813	Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily
hsd_id_Theobroma_cacao_788	XP_007018333.2; XP_007047694.1; XP_017983886.1	331; 334; 247	Pfam	PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_789	XP_007018343.2; XP_007047680.2	661; 653	Pfam	PF01293; PF01293	Phosphoenolpyruvate carboxykinase; Phosphoenolpyruvate carboxykinase	IPR001272; IPR001272	Phosphoenolpyruvate carboxykinase, ATP-utilising; Phosphoenolpyruvate carboxykinase, ATP-utilising
hsd_id_Theobroma_cacao_790	XP_007018357.2; XP_007041472.1	275; 327	Pfam	PF00719; PF00719	Inorganic pyrophosphatase; Inorganic pyrophosphatase	IPR008162; IPR008162	Inorganic pyrophosphatase; Inorganic pyrophosphatase
hsd_id_Theobroma_cacao_791	XP_007018362.1; XP_017981721.1; XP_007020266.2; XP_017984487.1; XP_007020259.2	513; 494; 491; 488; 536	Pfam	PF13347; PF13347; PF13347; PF13347; PF13347	MFS/sugar transport protein; MFS/sugar transport protein; MFS/sugar transport protein; MFS/sugar transport protein; MFS/sugar transport protein	-; -; -; -; -	-; -; -; -; -
hsd_id_Theobroma_cacao_792	XP_007018375.2; XP_017971046.1; XP_007048506.2; XP_007019168.1; XP_007041865.2; XP_017980224.1; XP_017980190.1	483; 479; 485; 488; 512; 466; 464	Pfam	PF01490; PF01490; PF01490; PF01490; PF01490; PF01490; PF01490	Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein	IPR013057; IPR013057; IPR013057; IPR013057; IPR013057; IPR013057; IPR013057	Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain
hsd_id_Theobroma_cacao_793	XP_007018385.2; XP_007042697.2	350; 329	Pfam	PF05770, PF17927; PF05770, PF17927	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain, Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain; Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain, Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain	IPR040464, IPR041429; IPR040464, IPR041429	Inositol 1,3,4-trisphosphate 5/6-kinase, ATP-grasp domain, Inositol-tetrakisphosphate 1-kinase, N-terminal; Inositol 1,3,4-trisphosphate 5/6-kinase, ATP-grasp domain, Inositol-tetrakisphosphate 1-kinase, N-terminal
hsd_id_Theobroma_cacao_794	XP_007018399.1; XP_007044712.1; XP_007026185.2; XP_017972386.1; XP_007031154.2	369; 314; 357; 319; 320	Pfam	PF03791, PF03789, PF03790, PF05920; PF05920, PF03791, PF03790, PF03789; PF05920, PF03791, PF03789, PF03790; PF05920, PF03791, PF03790, PF03789; PF03790, PF03791, PF05920, PF03789	KNOX2 domain, ELK domain, KNOX1 domain, Homeobox KN domain; Homeobox KN domain, KNOX2 domain, KNOX1 domain, ELK domain; Homeobox KN domain, KNOX2 domain, ELK domain, KNOX1 domain; Homeobox KN domain, KNOX2 domain, KNOX1 domain, ELK domain; KNOX1 domain, KNOX2 domain, Homeobox KN domain, ELK domain	IPR005541, IPR005539, IPR005540, IPR008422; IPR008422, IPR005541, IPR005540, IPR005539; IPR008422, IPR005541, IPR005539, IPR005540; IPR008422, IPR005541, IPR005540, IPR005539; IPR005540, IPR005541, IPR008422, IPR005539	KNOX2, ELK domain, KNOX1, Homeobox KN domain; Homeobox KN domain, KNOX2, KNOX1, ELK domain; Homeobox KN domain, KNOX2, ELK domain, KNOX1; Homeobox KN domain, KNOX2, KNOX1, ELK domain; KNOX1, KNOX2, Homeobox KN domain, ELK domain
hsd_id_Theobroma_cacao_795	XP_007018402.2; XP_007047628.2; XP_007018407.2; XP_017980885.1; XP_007041430.2; XP_007041427.2	393; 418; 387; 396; 424; 383	Pfam	PF01063; PF01063; PF01063; PF01063; PF01063; PF01063	Amino-transferase class IV; Amino-transferase class IV; Amino-transferase class IV; Amino-transferase class IV; Amino-transferase class IV; Amino-transferase class IV	IPR001544; IPR001544; IPR001544; IPR001544; IPR001544; IPR001544	Aminotransferase class IV; Aminotransferase class IV; Aminotransferase class IV; Aminotransferase class IV; Aminotransferase class IV; Aminotransferase class IV
hsd_id_Theobroma_cacao_796	XP_007018413.2; XP_007047625.2; XP_017982536.1; XP_017970729.1; XP_007040349.2	468; 469; 440; 483; 478	Pfam	PF00155; PF00155; PF00155; PF00155; PF00155	Aminotransferase class I and II; Aminotransferase class I and II; Aminotransferase class I and II; Aminotransferase class I and II; Aminotransferase class I and II	IPR004839; IPR004839; IPR004839; IPR004839; IPR004839	Aminotransferase, class I/classII; Aminotransferase, class I/classII; Aminotransferase, class I/classII; Aminotransferase, class I/classII; Aminotransferase, class I/classII
hsd_id_Theobroma_cacao_797	XP_007018428.2; XP_017980636.1; XP_017976738.1	680; 672; 712	Pfam	PF00847; PF00847; PF00847	AP2 domain; AP2 domain; AP2 domain	IPR001471; IPR001471; IPR001471	AP2/ERF domain; AP2/ERF domain; AP2/ERF domain
hsd_id_Theobroma_cacao_798	XP_007018432.2; XP_017969715.1; XP_007039182.2	614; 621; 577	Pfam	PF08879, PF08880; PF08880, PF08879; PF08880, PF08879	WRC, QLQ; QLQ, WRC; QLQ, WRC	IPR014977, IPR014978; IPR014978, IPR014977; IPR014978, IPR014977	WRC domain, Glutamine-Leucine-Glutamine, QLQ; Glutamine-Leucine-Glutamine, QLQ, WRC domain; Glutamine-Leucine-Glutamine, QLQ, WRC domain
hsd_id_Theobroma_cacao_799	XP_007018437.2; XP_007042685.2	1032; 1025	Pfam	PF01846, PF00397; PF00397, PF01846	FF domain, WW domain; WW domain, FF domain	IPR002713, IPR001202; IPR001202, IPR002713	FF domain, WW domain; WW domain, FF domain
hsd_id_Theobroma_cacao_800	XP_007018448.2; XP_007032940.1; XP_007045693.1; XP_017971847.1; XP_007017624.1; XP_017970105.1	141; 181; 197; 161; 160; 163	Pfam	PF00170; PF00170; PF00170; PF00170; PF00170; PF00170	bZIP transcription factor; bZIP transcription factor; bZIP transcription factor; bZIP transcription factor; bZIP transcription factor; bZIP transcription factor	IPR004827; IPR004827; IPR004827; IPR004827; IPR004827; IPR004827	Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain
hsd_id_Theobroma_cacao_801	XP_007018453.2; XP_007047591.2; XP_017970578.1	75; 81; 85	Pfam	PF06404; PF06404; PF06404	Phytosulfokine precursor protein (PSK); Phytosulfokine precursor protein (PSK); Phytosulfokine precursor protein (PSK)	IPR009438; IPR009438; IPR009438	Phytosulfokine; Phytosulfokine; Phytosulfokine
hsd_id_Theobroma_cacao_802	XP_007018456.1; XP_007047579.1	446; 451	Pfam	PF04564; PF04564	U-box domain; U-box domain	IPR003613; IPR003613	U box domain; U box domain
hsd_id_Theobroma_cacao_803	XP_007018458.2; XP_007034881.2	1063; 1145	Pfam	PF14381, PF00069; PF00069, PF14381	Ethylene-responsive protein kinase Le-CTR1, Protein kinase domain; Protein kinase domain, Ethylene-responsive protein kinase Le-CTR1	-, IPR000719; IPR000719, -	-, Protein kinase domain; Protein kinase domain, -
hsd_id_Theobroma_cacao_804	XP_007018461.2; XP_007047574.2	473; 476	Pfam	PF00450; PF00450	Serine carboxypeptidase; Serine carboxypeptidase	IPR001563; IPR001563	Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase
hsd_id_Theobroma_cacao_805	XP_007018479.2; XP_007042657.1; XP_017973898.1; XP_017984654.1; XP_007040178.2; XP_017971571.1; XP_017969522.1	193; 196; 189; 190; 219; 103; 208	Pfam	PF00412; PF00412; PF00412; PF00412; PF00412; PF00412; PF00412	LIM domain; LIM domain; LIM domain; LIM domain; LIM domain; LIM domain; LIM domain	IPR001781; IPR001781; IPR001781; IPR001781; IPR001781; IPR001781; IPR001781	Zinc finger, LIM-type; Zinc finger, LIM-type; Zinc finger, LIM-type; Zinc finger, LIM-type; Zinc finger, LIM-type; Zinc finger, LIM-type; Zinc finger, LIM-type
hsd_id_Theobroma_cacao_806	XP_007018484.2; XP_007029922.2	265; 232	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_807	XP_007018499.1; XP_007047520.2; XP_007032450.2; XP_007046221.1; XP_017971505.1	276; 276; 276; 276; 300	Pfam	PF01459; PF01459; PF01459; PF01459; PF01459	Eukaryotic porin; Eukaryotic porin; Eukaryotic porin; Eukaryotic porin; Eukaryotic porin	IPR027246; IPR027246; IPR027246; IPR027246; IPR027246	Eukaryotic porin/Tom40; Eukaryotic porin/Tom40; Eukaryotic porin/Tom40; Eukaryotic porin/Tom40; Eukaryotic porin/Tom40
hsd_id_Theobroma_cacao_808	XP_007018509.2; XP_017969914.1	266; 270	Pfam	PF12697; PF12697	Alpha/beta hydrolase family; Alpha/beta hydrolase family	IPR000073; IPR000073	Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1
hsd_id_Theobroma_cacao_809	XP_007018510.2; XP_017981357.1	1020; 1012	Pfam	PF12515, PF00689, PF00122, PF00690, PF13246; PF12515, PF00122, PF13246, PF00689, PF00690	Ca2+-ATPase N terminal autoinhibitory domain, Cation transporting ATPase, C-terminus, E1-E2 ATPase, Cation transporter/ATPase, N-terminus, Cation transport ATPase (P-type); Ca2+-ATPase N terminal autoinhibitory domain, E1-E2 ATPase, Cation transport ATPase (P-type), Cation transporting ATPase, C-terminus, Cation transporter/ATPase, N-terminus	IPR024750, IPR006068, -, IPR004014, -; IPR024750, -, -, IPR006068, IPR004014	Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain, Cation-transporting P-type ATPase, C-terminal, -, Cation-transporting P-type ATPase, N-terminal, -; Calcium-transporting P-type ATPase, N-terminal autoinhibitory domain, -, -, Cation-transporting P-type ATPase, C-terminal, Cation-transporting P-type ATPase, N-terminal
hsd_id_Theobroma_cacao_810	XP_007018525.2; XP_007042625.2	262; 267	Pfam	PF13912; PF13912	C2H2-type zinc finger; C2H2-type zinc finger	-; -	-; -
hsd_id_Theobroma_cacao_811	XP_007018527.2; XP_007047485.1; XP_017975845.1; XP_007044347.1; XP_007036523.2; XP_007042619.2	225; 231; 297; 236; 252; 263	Pfam	PF03195; PF03195; PF03195; PF03195; PF03195; PF03195	Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain; Lateral organ boundaries (LOB) domain	IPR004883; IPR004883; IPR004883; IPR004883; IPR004883; IPR004883	Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB; Lateral organ boundaries, LOB
hsd_id_Theobroma_cacao_812	XP_007018536.2; XP_017973832.1	950; 862	Pfam	PF12174, PF05236; PF05236, PF12174	RCD1-SRO-TAF4 (RST) plant domain, Transcription initiation factor TFIID component TAF4 family; Transcription initiation factor TFIID component TAF4 family, RCD1-SRO-TAF4 (RST) plant domain	IPR022003, IPR007900; IPR007900, IPR022003	RST domain, Transcription initiation factor TFIID component TAF4, C-terminal; Transcription initiation factor TFIID component TAF4, C-terminal, RST domain
hsd_id_Theobroma_cacao_813	XP_007018539.2; XP_007047476.1; XP_007047493.2	333; 382; 428	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_814	XP_007018551.2; XP_007042587.2	389; 421	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_815	XP_007018552.2; XP_017971080.1; XP_017969438.1	648; 673; 630	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_816	XP_007018554.2; XP_017981278.1; XP_017981105.1; XP_017981279.1; XP_017981680.1; XP_017980926.1; XP_017974256.1; XP_007047419.2; XP_007018585.2; XP_017975489.1; XP_017974135.1; XP_007033006.2; XP_017981864.1; XP_017974134.1	499; 499; 499; 499; 505; 498; 501; 533; 516; 504; 501; 504; 402; 504	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_817	XP_007018577.2; XP_007047425.1; XP_017970790.1; XP_017975159.1; XP_017982475.1; XP_017982387.1	186; 194; 189; 150; 165; 192	Pfam	; ; ; ; ; 	; ; ; ; ; 	; ; ; ; ; 	; ; ; ; ; 
hsd_id_Theobroma_cacao_818	XP_007018597.2; XP_007018599.2; XP_007027451.2; XP_017984321.1	801; 797; 799; 827	Pfam	PF00954, PF01453, PF00069; PF00954, PF00069, PF01453; PF01453, PF00069, PF00954; PF00954, PF00069, PF01453	S-locus glycoprotein domain, D-mannose binding lectin, Protein kinase domain; S-locus glycoprotein domain, Protein kinase domain, D-mannose binding lectin; D-mannose binding lectin, Protein kinase domain, S-locus glycoprotein domain; S-locus glycoprotein domain, Protein kinase domain, D-mannose binding lectin	IPR000858, IPR001480, IPR000719; IPR000858, IPR000719, IPR001480; IPR001480, IPR000719, IPR000858; IPR000858, IPR000719, IPR001480	S-locus glycoprotein domain, Bulb-type lectin domain, Protein kinase domain; S-locus glycoprotein domain, Protein kinase domain, Bulb-type lectin domain; Bulb-type lectin domain, Protein kinase domain, S-locus glycoprotein domain; S-locus glycoprotein domain, Protein kinase domain, Bulb-type lectin domain
hsd_id_Theobroma_cacao_819	XP_007018601.2; XP_007019291.2	401; 388	Pfam	PF00226, PF14308; PF14308, PF00226	DnaJ domain, X-domain of DnaJ-containing; X-domain of DnaJ-containing, DnaJ domain	IPR001623, IPR026894; IPR026894, IPR001623	DnaJ domain, DNAJ-containing protein, X-domain; DNAJ-containing protein, X-domain, DnaJ domain
hsd_id_Theobroma_cacao_820	XP_007018603.2; XP_007043141.2; XP_007019594.2; XP_007048167.1	347; 347; 335; 335	Pfam	PF03151; PF03151; PF03151; PF03151	Triose-phosphate Transporter family; Triose-phosphate Transporter family; Triose-phosphate Transporter family; Triose-phosphate Transporter family	IPR004853; IPR004853; IPR004853; IPR004853	Sugar phosphate transporter domain; Sugar phosphate transporter domain; Sugar phosphate transporter domain; Sugar phosphate transporter domain
hsd_id_Theobroma_cacao_821	XP_007018611.2; XP_007038766.2; XP_007040283.2	478; 489; 458	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_822	XP_007018641.2; XP_007043118.2	745; 791	Pfam	PF10551, PF04434, PF03101; PF03101, PF10551, PF04434	MULE transposase domain, SWIM zinc finger, FAR1 DNA-binding domain; FAR1 DNA-binding domain, MULE transposase domain, SWIM zinc finger	IPR018289, IPR007527, IPR004330; IPR004330, IPR018289, IPR007527	MULE transposase domain, Zinc finger, SWIM-type, FAR1 DNA binding domain; FAR1 DNA binding domain, MULE transposase domain, Zinc finger, SWIM-type
hsd_id_Theobroma_cacao_823	XP_007018657.2; XP_007043108.1; XP_007046440.2	578; 584; 569	Pfam	PF00368; PF00368; PF00368	Hydroxymethylglutaryl-coenzyme A reductase; Hydroxymethylglutaryl-coenzyme A reductase; Hydroxymethylglutaryl-coenzyme A reductase	IPR002202; IPR002202; IPR002202	Hydroxymethylglutaryl-CoA reductase, class I/II; Hydroxymethylglutaryl-CoA reductase, class I/II; Hydroxymethylglutaryl-CoA reductase, class I/II
hsd_id_Theobroma_cacao_824	XP_007018658.2; XP_007022428.1; XP_017981104.1; XP_017979903.1	319; 317; 323; 232	Pfam	PF01370; PF01370; PF01370; PF01370	NAD dependent epimerase/dehydratase family; NAD dependent epimerase/dehydratase family; NAD dependent epimerase/dehydratase family; NAD dependent epimerase/dehydratase family	IPR001509; IPR001509; IPR001509; IPR001509	NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase
hsd_id_Theobroma_cacao_825	XP_007018694.2; XP_007018695.1; XP_007052334.2	187; 154; 175	Pfam	PF02298; PF02298; PF02298	Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain	IPR003245; IPR003245; IPR003245	Phytocyanin domain; Phytocyanin domain; Phytocyanin domain
hsd_id_Theobroma_cacao_826	XP_007018717.2; XP_017980809.1; XP_007029344.1; XP_007039362.2; XP_007048342.2; XP_007048344.2; XP_017981819.1; XP_007019379.2; XP_007019388.2; XP_007050114.1	406; 388; 378; 394; 381; 380; 379; 379; 382; 379	Pfam	PF08240, PF00107; PF00107, PF08240; PF08240, PF00107; PF08240, PF00107; PF00107, PF08240; PF00107, PF08240; PF00107, PF08240; PF08240, PF00107; PF08240, PF00107; PF00107, PF08240	Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain	IPR013154, IPR013149; IPR013149, IPR013154; IPR013154, IPR013149; IPR013154, IPR013149; IPR013149, IPR013154; IPR013149, IPR013154; IPR013149, IPR013154; IPR013154, IPR013149; IPR013154, IPR013149; IPR013149, IPR013154	Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, C-terminal, Alcohol dehydrogenase, N-terminal; Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, C-terminal, Alcohol dehydrogenase, N-terminal; Alcohol dehydrogenase, C-terminal, Alcohol dehydrogenase, N-terminal; Alcohol dehydrogenase, C-terminal, Alcohol dehydrogenase, N-terminal; Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, C-terminal, Alcohol dehydrogenase, N-terminal
hsd_id_Theobroma_cacao_827	XP_007018722.2; XP_007030130.2; XP_007021821.2; XP_007029519.2	396; 372; 368; 386	Pfam	PF00657; PF00657; PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087; IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_828	XP_007018725.2; XP_007047872.2; XP_017972148.1; XP_007042344.1; XP_007047159.2; XP_017971702.1; XP_007049928.1	338; 342; 340; 370; 360; 353; 352	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_829	XP_007018728.1; XP_007047874.1; XP_017971551.1	249; 249; 249	Pfam	PF01092; PF01092; PF01092	Ribosomal protein S6e; Ribosomal protein S6e; Ribosomal protein S6e	IPR001377; IPR001377; IPR001377	Ribosomal protein S6e; Ribosomal protein S6e; Ribosomal protein S6e
hsd_id_Theobroma_cacao_830	XP_007018732.2; XP_007042911.2; XP_007039666.1; XP_007047890.2	539; 515; 519; 525	Pfam	PF01474; PF01474; PF01474; PF01474	Class-II DAHP synthetase family; Class-II DAHP synthetase family; Class-II DAHP synthetase family; Class-II DAHP synthetase family	IPR002480; IPR002480; IPR002480; IPR002480	DAHP synthetase, class II; DAHP synthetase, class II; DAHP synthetase, class II; DAHP synthetase, class II
hsd_id_Theobroma_cacao_831	XP_007018750.2; XP_017971115.1	695; 619	Pfam	PF03141; PF03141	Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159; IPR004159	Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase
hsd_id_Theobroma_cacao_832	XP_007018770.1; XP_007025281.2; XP_007033055.1; XP_007032542.2; XP_007023401.2; XP_007039259.1	312; 280; 268; 285; 301; 298	Pfam	PF00230; PF00230; PF00230; PF00230; PF00230; PF00230	Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein	IPR000425; IPR000425; IPR000425; IPR000425; IPR000425; IPR000425	Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein; Major intrinsic protein
hsd_id_Theobroma_cacao_833	XP_007018779.2; XP_007047932.2	420; 438	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_834	XP_007018797.2; XP_007047970.1	292; 306	Pfam	PF13266; PF13266	Protein of unknown function (DUF4057); Protein of unknown function (DUF4057)	IPR025131; IPR025131	Domain of unknown function DUF4057; Domain of unknown function DUF4057
hsd_id_Theobroma_cacao_835	XP_007018800.2; XP_017969843.1; XP_017970761.1	516; 519; 521	Pfam	PF07690; PF07690; PF07690	Major Facilitator Superfamily; Major Facilitator Superfamily; Major Facilitator Superfamily	IPR011701; IPR011701; IPR011701	Major facilitator superfamily; Major facilitator superfamily; Major facilitator superfamily
hsd_id_Theobroma_cacao_836	XP_007018810.2; XP_007047993.1; XP_017972997.1; XP_017973923.1; XP_017972379.1	364; 375; 384; 385; 341	Pfam	PF02358; PF02358; PF02358; PF02358; PF02358	Trehalose-phosphatase; Trehalose-phosphatase; Trehalose-phosphatase; Trehalose-phosphatase; Trehalose-phosphatase	IPR003337; IPR003337; IPR003337; IPR003337; IPR003337	Trehalose-phosphatase; Trehalose-phosphatase; Trehalose-phosphatase; Trehalose-phosphatase; Trehalose-phosphatase
hsd_id_Theobroma_cacao_837	XP_007018822.1; XP_007020317.2; XP_007034092.2	452; 446; 438	Pfam	PF00400; PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680; IPR001680	WD40 repeat; WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_838	XP_007018838.2; XP_007029892.1	337; 342	Pfam	PF00650, PF03765; PF00650, PF03765	CRAL/TRIO domain, CRAL/TRIO, N-terminal domain; CRAL/TRIO domain, CRAL/TRIO, N-terminal domain	IPR001251, IPR011074; IPR001251, IPR011074	CRAL-TRIO lipid binding domain, CRAL/TRIO, N-terminal domain; CRAL-TRIO lipid binding domain, CRAL/TRIO, N-terminal domain
hsd_id_Theobroma_cacao_839	XP_007018857.2; XP_007043016.2; XP_007050523.2; XP_017970541.1; XP_007024090.2; XP_017975676.1; XP_007045150.1; XP_007018861.2; XP_017982130.1	695; 657; 655; 645; 665; 650; 652; 660; 642	Pfam	PF01740, PF00916; PF01740, PF00916; PF00916, PF01740; PF00916, PF01740; PF01740, PF00916; PF01740, PF00916; PF01740, PF00916; PF00916, PF01740; PF00916, PF01740	STAS domain, Sulfate permease family; STAS domain, Sulfate permease family; Sulfate permease family, STAS domain; Sulfate permease family, STAS domain; STAS domain, Sulfate permease family; STAS domain, Sulfate permease family; STAS domain, Sulfate permease family; Sulfate permease family, STAS domain; Sulfate permease family, STAS domain	IPR002645, IPR011547; IPR002645, IPR011547; IPR011547, IPR002645; IPR011547, IPR002645; IPR002645, IPR011547; IPR002645, IPR011547; IPR002645, IPR011547; IPR011547, IPR002645; IPR011547, IPR002645	STAS domain, SLC26A/SulP transporter domain; STAS domain, SLC26A/SulP transporter domain; SLC26A/SulP transporter domain, STAS domain; SLC26A/SulP transporter domain, STAS domain; STAS domain, SLC26A/SulP transporter domain; STAS domain, SLC26A/SulP transporter domain; STAS domain, SLC26A/SulP transporter domain; SLC26A/SulP transporter domain, STAS domain; SLC26A/SulP transporter domain, STAS domain
hsd_id_Theobroma_cacao_840	XP_007018869.2; XP_007048040.2; XP_007045081.2; XP_007041823.1; XP_007046632.1; XP_017974739.1	149; 152; 150; 154; 156; 149	Pfam	PF00403; PF00403; PF00403; PF00403; PF00403; PF00403	Heavy-metal-associated domain; Heavy-metal-associated domain; Heavy-metal-associated domain; Heavy-metal-associated domain; Heavy-metal-associated domain; Heavy-metal-associated domain	IPR006121; IPR006121; IPR006121; IPR006121; IPR006121; IPR006121	Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA
hsd_id_Theobroma_cacao_841	XP_007018870.2; XP_007048042.2	527; 539	Pfam	PF14543, PF14541; PF14543, PF14541	Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal; Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal	IPR032861, IPR032799; IPR032861, IPR032799	Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal; Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal
hsd_id_Theobroma_cacao_842	XP_007018878.2; XP_017975907.1; XP_007050803.1; XP_017973120.1; XP_007038071.1	118; 117; 137; 118; 118	Pfam	PF13881; PF13881; PF13881; PF13881; PF13881	Ubiquitin-2 like Rad60 SUMO-like; Ubiquitin-2 like Rad60 SUMO-like; Ubiquitin-2 like Rad60 SUMO-like; Ubiquitin-2 like Rad60 SUMO-like; Ubiquitin-2 like Rad60 SUMO-like	IPR039540; IPR039540; IPR039540; IPR039540; IPR039540	UBL3-like, ubiquitin domain; UBL3-like, ubiquitin domain; UBL3-like, ubiquitin domain; UBL3-like, ubiquitin domain; UBL3-like, ubiquitin domain
hsd_id_Theobroma_cacao_843	XP_007018915.2; XP_007029907.2	311; 348	Pfam	PF01025; PF01025	GrpE; GrpE	IPR000740; IPR000740	GrpE nucleotide exchange factor; GrpE nucleotide exchange factor
hsd_id_Theobroma_cacao_844	XP_007018918.1; XP_007033120.2	442; 454	Pfam	PF01873, PF02020; PF02020, PF01873	Domain found in IF2B/IF5, eIF4-gamma/eIF5/eIF2-epsilon; eIF4-gamma/eIF5/eIF2-epsilon, Domain found in IF2B/IF5	IPR002735, IPR003307; IPR003307, IPR002735	Translation initiation factor IF2/IF5, W2 domain; W2 domain, Translation initiation factor IF2/IF5
hsd_id_Theobroma_cacao_845	XP_007018922.2; XP_017981563.1	466; 384	Pfam	PF02204, PF18151; PF18151, PF02204	Vacuolar sorting protein 9 (VPS9) domain, Domain of unknown function (DUF5601); Domain of unknown function (DUF5601), Vacuolar sorting protein 9 (VPS9) domain	IPR003123, IPR041545; IPR041545, IPR003123	VPS9 domain, RABX5, catalytic core helical domain; RABX5, catalytic core helical domain, VPS9 domain
hsd_id_Theobroma_cacao_846	XP_007018960.2; XP_007044894.2; XP_017973659.1	823; 802; 785	Pfam	PF15413, PF01237; PF15413, PF01237; PF15413, PF01237	Pleckstrin homology domain, Oxysterol-binding protein; Pleckstrin homology domain, Oxysterol-binding protein; Pleckstrin homology domain, Oxysterol-binding protein	-, IPR000648; -, IPR000648; -, IPR000648	-, Oxysterol-binding protein; -, Oxysterol-binding protein; -, Oxysterol-binding protein
hsd_id_Theobroma_cacao_847	XP_007018973.2; XP_007018975.2; XP_017980929.1; XP_017980975.1; XP_007018979.2	407; 478; 479; 482; 468	Pfam	PF00856, PF01753; PF00856, PF01753; PF01753, PF00856; PF00856, PF01753; PF00856, PF01753	SET domain, MYND finger; SET domain, MYND finger; MYND finger, SET domain; SET domain, MYND finger; SET domain, MYND finger	IPR001214, IPR002893; IPR001214, IPR002893; IPR002893, IPR001214; IPR001214, IPR002893; IPR001214, IPR002893	SET domain, Zinc finger, MYND-type; SET domain, Zinc finger, MYND-type; Zinc finger, MYND-type, SET domain; SET domain, Zinc finger, MYND-type; SET domain, Zinc finger, MYND-type
hsd_id_Theobroma_cacao_848	XP_007018985.1; XP_007020035.2; XP_007045152.1	592; 593; 561	Pfam	PF10250; PF10250; PF10250	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase	IPR019378; IPR019378; IPR019378	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase
hsd_id_Theobroma_cacao_849	XP_007018993.2; XP_017976259.1; XP_007018995.1	333; 335; 331	Pfam	PF14226, PF03171; PF03171, PF14226; PF14226, PF03171	non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily	IPR026992, IPR044861; IPR044861, IPR026992; IPR026992, IPR044861	Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain
hsd_id_Theobroma_cacao_850	XP_007019008.2; XP_007052396.2; XP_007039639.2	439; 529; 542	Pfam	PF02493; PF02493; PF02493	MORN repeat; MORN repeat; MORN repeat	IPR003409; IPR003409; IPR003409	MORN motif; MORN motif; MORN motif
hsd_id_Theobroma_cacao_851	XP_007019015.2; XP_007043100.2	426; 454	Pfam	PF01546, PF07687; PF01546, PF07687	Peptidase family M20/M25/M40, Peptidase dimerisation domain; Peptidase family M20/M25/M40, Peptidase dimerisation domain	IPR002933, IPR011650; IPR002933, IPR011650	Peptidase M20, Peptidase M20, dimerisation domain; Peptidase M20, Peptidase M20, dimerisation domain
hsd_id_Theobroma_cacao_852	XP_007019019.2; XP_007041502.1	219; 222	Pfam	PF01105; PF01105	emp24/gp25L/p24 family/GOLD; emp24/gp25L/p24 family/GOLD	IPR009038; IPR009038	GOLD domain; GOLD domain
hsd_id_Theobroma_cacao_853	XP_007019028.1; XP_017982593.1; XP_017981984.1	189; 167; 225	Pfam	PF04752; PF04752; PF04752	ChaC-like protein; ChaC-like protein; ChaC-like protein	IPR006840; IPR006840; IPR006840	Glutathione-specific gamma-glutamylcyclotransferase; Glutathione-specific gamma-glutamylcyclotransferase; Glutathione-specific gamma-glutamylcyclotransferase
hsd_id_Theobroma_cacao_854	XP_007019050.1; XP_007030505.2; XP_017971082.1; XP_017970687.1	645; 739; 576; 767	Pfam	PF04434, PF03108, PF10551; PF10551, PF03108, PF04434; PF03108, PF04434, PF10551; PF03108, PF04434, PF10551	SWIM zinc finger, MuDR family transposase, MULE transposase domain; MULE transposase domain, MuDR family transposase, SWIM zinc finger; MuDR family transposase, SWIM zinc finger, MULE transposase domain; MuDR family transposase, SWIM zinc finger, MULE transposase domain	IPR007527, IPR004332, IPR018289; IPR018289, IPR004332, IPR007527; IPR004332, IPR007527, IPR018289; IPR004332, IPR007527, IPR018289	Zinc finger, SWIM-type, Transposase, MuDR, plant, MULE transposase domain; MULE transposase domain, Transposase, MuDR, plant, Zinc finger, SWIM-type; Transposase, MuDR, plant, Zinc finger, SWIM-type, MULE transposase domain; Transposase, MuDR, plant, Zinc finger, SWIM-type, MULE transposase domain
hsd_id_Theobroma_cacao_855	XP_007019063.2; XP_017978100.1	692; 732	Pfam	PF00501; PF00501	AMP-binding enzyme; AMP-binding enzyme	IPR000873; IPR000873	AMP-dependent synthetase/ligase; AMP-dependent synthetase/ligase
hsd_id_Theobroma_cacao_856	XP_007019072.1; XP_017972881.1	163; 122	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_857	XP_007019083.2; XP_017976958.1	1101; 1017	Pfam	PF00626, PF08033, PF04815, PF04811, PF04810; PF00626, PF04810, PF08033, PF04811, PF04815	Gelsolin repeat, Sec23/Sec24 beta-sandwich domain, Sec23/Sec24 helical domain, Sec23/Sec24 trunk domain, Sec23/Sec24 zinc finger; Gelsolin repeat, Sec23/Sec24 zinc finger, Sec23/Sec24 beta-sandwich domain, Sec23/Sec24 trunk domain, Sec23/Sec24 helical domain	IPR007123, IPR012990, IPR006900, IPR006896, IPR006895; IPR007123, IPR006895, IPR012990, IPR006896, IPR006900	Gelsolin-like domain, Sec23/Sec24 beta-sandwich, Sec23/Sec24, helical domain, Sec23/Sec24, trunk domain, Zinc finger, Sec23/Sec24-type; Gelsolin-like domain, Zinc finger, Sec23/Sec24-type, Sec23/Sec24 beta-sandwich, Sec23/Sec24, trunk domain, Sec23/Sec24, helical domain
hsd_id_Theobroma_cacao_858	XP_007019084.1; XP_017979521.1	326; 328	Pfam	PF00651; PF00651	BTB/POZ domain; BTB/POZ domain	IPR000210; IPR000210	BTB/POZ domain; BTB/POZ domain
hsd_id_Theobroma_cacao_859	XP_007042016.1; XP_007046739.1; XP_007019085.1; XP_017981170.1	165; 165; 165; 165	Pfam	PF00137; PF00137; PF00137; PF00137	ATP synthase subunit C; ATP synthase subunit C; ATP synthase subunit C; ATP synthase subunit C	IPR002379; IPR002379; IPR002379; IPR002379	V-ATPase proteolipid subunit C-like domain; V-ATPase proteolipid subunit C-like domain; V-ATPase proteolipid subunit C-like domain; V-ATPase proteolipid subunit C-like domain
hsd_id_Theobroma_cacao_860	XP_007019090.2; XP_017981822.1; XP_007039215.2; XP_017982533.1; XP_007099684.2; XP_017982058.1; XP_007032646.2; XP_017976302.1; XP_017976908.1; XP_017976311.1; XP_007039321.2	358; 358; 365; 368; 356; 356; 365; 368; 367; 396; 367	Pfam	PF00891, PF08100; PF08100, PF00891; PF00891, PF08100; PF08100, PF00891; PF00891, PF08100; PF08100, PF00891; PF00891, PF08100; PF08100, PF00891; PF00891, PF08100; PF00891, PF08100; PF08100, PF00891	O-methyltransferase domain, Dimerisation domain; Dimerisation domain, O-methyltransferase domain; O-methyltransferase domain, Dimerisation domain; Dimerisation domain, O-methyltransferase domain; O-methyltransferase domain, Dimerisation domain; Dimerisation domain, O-methyltransferase domain; O-methyltransferase domain, Dimerisation domain; Dimerisation domain, O-methyltransferase domain; O-methyltransferase domain, Dimerisation domain; O-methyltransferase domain, Dimerisation domain; Dimerisation domain, O-methyltransferase domain	IPR001077, IPR012967; IPR012967, IPR001077; IPR001077, IPR012967; IPR012967, IPR001077; IPR001077, IPR012967; IPR012967, IPR001077; IPR001077, IPR012967; IPR012967, IPR001077; IPR001077, IPR012967; IPR001077, IPR012967; IPR012967, IPR001077	O-methyltransferase domain, Plant methyltransferase dimerisation; Plant methyltransferase dimerisation, O-methyltransferase domain; O-methyltransferase domain, Plant methyltransferase dimerisation; Plant methyltransferase dimerisation, O-methyltransferase domain; O-methyltransferase domain, Plant methyltransferase dimerisation; Plant methyltransferase dimerisation, O-methyltransferase domain; O-methyltransferase domain, Plant methyltransferase dimerisation; Plant methyltransferase dimerisation, O-methyltransferase domain; O-methyltransferase domain, Plant methyltransferase dimerisation; O-methyltransferase domain, Plant methyltransferase dimerisation; Plant methyltransferase dimerisation, O-methyltransferase domain
hsd_id_Theobroma_cacao_861	XP_007019091.2; XP_017983933.1	372; 344	Pfam	PF03151; PF03151	Triose-phosphate Transporter family; Triose-phosphate Transporter family	IPR004853; IPR004853	Sugar phosphate transporter domain; Sugar phosphate transporter domain
hsd_id_Theobroma_cacao_862	XP_007019123.2; XP_017981865.1; XP_017980881.1; XP_007048530.2	463; 428; 434; 421	Pfam	PF14541, PF14543; PF14541, PF14543; PF14541, PF14543; PF14541, PF14543	Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal	IPR032799, IPR032861; IPR032799, IPR032861; IPR032799, IPR032861; IPR032799, IPR032861	Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal
hsd_id_Theobroma_cacao_863	XP_007019130.2; XP_017982341.1	2136; 2130	Pfam	PF00168, PF00514; PF00168, PF00514	C2 domain, Armadillo/beta-catenin-like repeat; C2 domain, Armadillo/beta-catenin-like repeat	IPR000008, IPR000225; IPR000008, IPR000225	C2 domain, Armadillo; C2 domain, Armadillo
hsd_id_Theobroma_cacao_864	XP_007019147.2; XP_017980978.1; XP_017977974.1	557; 557; 543	Pfam	PF01566; PF01566; PF01566	Natural resistance-associated macrophage protein; Natural resistance-associated macrophage protein; Natural resistance-associated macrophage protein	IPR001046; IPR001046; IPR001046	NRAMP family; NRAMP family; NRAMP family
hsd_id_Theobroma_cacao_865	XP_007019258.2; XP_007048446.2; XP_007038527.1; XP_017976182.1	382; 417; 393; 393	Pfam	PF14226, PF03171; PF03171, PF14226; PF14226, PF03171; PF14226, PF03171	non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily	IPR026992, IPR044861; IPR044861, IPR026992; IPR026992, IPR044861; IPR026992, IPR044861	Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain
hsd_id_Theobroma_cacao_866	XP_007019259.2; XP_017981690.1; XP_017981691.1; XP_017981899.1	745; 745; 743; 754	Pfam	PF00069, PF13947, PF07645; PF07645, PF13947, PF00069; PF07645, PF13947, PF00069; PF00069, PF13947, PF07645	Protein kinase domain, Wall-associated receptor kinase galacturonan-binding, Calcium-binding EGF domain; Calcium-binding EGF domain, Wall-associated receptor kinase galacturonan-binding, Protein kinase domain; Calcium-binding EGF domain, Wall-associated receptor kinase galacturonan-binding, Protein kinase domain; Protein kinase domain, Wall-associated receptor kinase galacturonan-binding, Calcium-binding EGF domain	IPR000719, IPR025287, IPR001881; IPR001881, IPR025287, IPR000719; IPR001881, IPR025287, IPR000719; IPR000719, IPR025287, IPR001881	Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain, EGF-like calcium-binding domain; EGF-like calcium-binding domain, Wall-associated receptor kinase, galacturonan-binding domain, Protein kinase domain; EGF-like calcium-binding domain, Wall-associated receptor kinase, galacturonan-binding domain, Protein kinase domain; Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain, EGF-like calcium-binding domain
hsd_id_Theobroma_cacao_867	XP_007019269.2; XP_007040080.2	268; 274	Pfam	PF12638; PF12638	Staygreen protein; Staygreen protein	IPR024438; IPR024438	Staygreen protein; Staygreen protein
hsd_id_Theobroma_cacao_868	XP_007019287.2; XP_007043903.2; XP_017971810.1; XP_007011818.2; XP_017975106.1; XP_007040015.2; XP_017972325.1	450; 473; 447; 486; 443; 441; 438	Pfam	PF01842; PF01842; PF01842; PF01842; PF01842; PF01842; PF01842	ACT domain; ACT domain; ACT domain; ACT domain; ACT domain; ACT domain; ACT domain	IPR002912; IPR002912; IPR002912; IPR002912; IPR002912; IPR002912; IPR002912	ACT domain; ACT domain; ACT domain; ACT domain; ACT domain; ACT domain; ACT domain
hsd_id_Theobroma_cacao_869	XP_007019305.2; XP_017972580.1	332; 331	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_870	XP_007019339.2; XP_007020616.2; XP_017982760.1; XP_017978872.1; XP_007021110.2	570; 540; 526; 548; 596	Pfam	PF03514; PF03514; PF03514; PF03514; PF03514	GRAS domain family; GRAS domain family; GRAS domain family; GRAS domain family; GRAS domain family	IPR005202; IPR005202; IPR005202; IPR005202; IPR005202	Transcription factor GRAS; Transcription factor GRAS; Transcription factor GRAS; Transcription factor GRAS; Transcription factor GRAS
hsd_id_Theobroma_cacao_871	XP_007019358.2; XP_017978985.1; XP_017972889.1; XP_007040129.2	938; 900; 859; 807	Pfam	PF01803; PF01803; PF01803; PF01803	LIM-domain binding protein; LIM-domain binding protein; LIM-domain binding protein; LIM-domain binding protein	IPR029005; IPR029005; IPR029005; IPR029005	LIM-domain binding protein/SEUSS; LIM-domain binding protein/SEUSS; LIM-domain binding protein/SEUSS; LIM-domain binding protein/SEUSS
hsd_id_Theobroma_cacao_872	XP_007019370.2; XP_007019373.2	458; 489	Pfam	PF03016; PF03016	Exostosin family; Exostosin family	IPR040911; IPR040911	Exostosin, GT47 domain; Exostosin, GT47 domain
hsd_id_Theobroma_cacao_873	XP_007019383.2; XP_017977812.1; XP_017982550.1; XP_007034342.2; XP_007036846.2; XP_017971526.1; XP_007032452.1	547; 594; 634; 454; 606; 649; 356	Pfam	PF03547; PF03547; PF03547; PF03547; PF03547; PF03547; PF03547	Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein	IPR004776; IPR004776; IPR004776; IPR004776; IPR004776; IPR004776; IPR004776	Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein; Membrane transport protein
hsd_id_Theobroma_cacao_874	XP_007019394.1; XP_017979206.1	423; 455	Pfam	PF13839, PF14416; PF14416, PF13839	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p	IPR026057, IPR025846; IPR025846, IPR026057	PC-Esterase, PMR5 N-terminal domain; PMR5 N-terminal domain, PC-Esterase
hsd_id_Theobroma_cacao_875	XP_007019399.2; XP_017979739.1; XP_017980067.1; XP_017980099.1; XP_007021681.2; XP_007021448.2	473; 464; 464; 464; 464; 465	Pfam	PF00450; PF00450; PF00450; PF00450; PF00450; PF00450	Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase	IPR001563; IPR001563; IPR001563; IPR001563; IPR001563; IPR001563	Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase
hsd_id_Theobroma_cacao_876	XP_007019416.2; XP_017980844.1; XP_017979561.1	238; 254; 241	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_877	XP_007019435.2; XP_007036542.2	231; 237	Pfam	PF05678; PF05678	VQ motif; VQ motif	IPR008889; IPR008889	VQ; VQ
hsd_id_Theobroma_cacao_878	XP_007019467.2; XP_007043040.2; XP_007023068.2; XP_017970626.1; XP_007041605.2; XP_017972102.1	227; 229; 226; 216; 215; 305	Pfam	PF01988; PF01988; PF01988; PF01988; PF01988; PF01988	VIT family; VIT family; VIT family; VIT family; VIT family; VIT family	IPR008217; IPR008217; IPR008217; IPR008217; IPR008217; IPR008217	Ccc1 family; Ccc1 family; Ccc1 family; Ccc1 family; Ccc1 family; Ccc1 family
hsd_id_Theobroma_cacao_879	XP_007019478.1; XP_017972101.1	69; 69	Pfam	PF02320; PF02320	Ubiquinol-cytochrome C reductase hinge protein; Ubiquinol-cytochrome C reductase hinge protein	IPR023184; IPR023184	Ubiquinol-cytochrome C reductase hinge domain; Ubiquinol-cytochrome C reductase hinge domain
hsd_id_Theobroma_cacao_880	XP_007019480.2; XP_007027577.2; XP_007041596.2; XP_017982037.1	446; 537; 447; 454	Pfam	PF13837; PF13837; PF13837; PF13837	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR044822; IPR044822; IPR044822; IPR044822	Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4
hsd_id_Theobroma_cacao_881	XP_007019522.2; XP_007049840.2; XP_017977540.1	661; 614; 618	Pfam	PF03033, PF00201; PF03033, PF00201; PF00201, PF03033	Glycosyltransferase family 28 N-terminal domain, UDP-glucoronosyl and UDP-glucosyl transferase; Glycosyltransferase family 28 N-terminal domain, UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase, Glycosyltransferase family 28 N-terminal domain	IPR004276, IPR002213; IPR004276, IPR002213; IPR002213, IPR004276	Glycosyltransferase family 28, N-terminal domain, UDP-glucuronosyl/UDP-glucosyltransferase; Glycosyltransferase family 28, N-terminal domain, UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase, Glycosyltransferase family 28, N-terminal domain
hsd_id_Theobroma_cacao_882	XP_007019525.2; XP_017975677.1	211; 216	Pfam	PF08787; PF08787	Alginate lyase; Alginate lyase	IPR014895; IPR014895	Alginate lyase 2; Alginate lyase 2
hsd_id_Theobroma_cacao_883	XP_007019544.1; XP_007024886.1	140; 133	Pfam	PF05617; PF05617	Prolamin-like; Prolamin-like	IPR008502; IPR008502	Prolamin-like domain; Prolamin-like domain
hsd_id_Theobroma_cacao_884	XP_007019555.2; XP_017981006.1; XP_007042368.2; XP_017971964.1	506; 507; 517; 507	Pfam	PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_885	XP_007019566.2; XP_017974357.1; XP_007044810.2; XP_007032619.2; XP_017984289.1	437; 437; 433; 412; 427	Pfam	PF00847; PF00847; PF00847; PF00847; PF00847	AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain	IPR001471; IPR001471; IPR001471; IPR001471; IPR001471	AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain
hsd_id_Theobroma_cacao_886	XP_007019567.2; XP_017981022.1	200; 180	Pfam	PF04043; PF04043	Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor	IPR006501; IPR006501	Pectinesterase inhibitor domain; Pectinesterase inhibitor domain
hsd_id_Theobroma_cacao_887	XP_007019572.2; XP_017970564.1; XP_007031947.2; XP_017973971.1; XP_007043729.2; XP_007028179.2; XP_017976713.1	422; 349; 442; 448; 423; 454; 381	Pfam	PF01529; PF01529; PF01529; PF01529; PF01529; PF01529; PF01529	DHHC palmitoyltransferase; DHHC palmitoyltransferase; DHHC palmitoyltransferase; DHHC palmitoyltransferase; DHHC palmitoyltransferase; DHHC palmitoyltransferase; DHHC palmitoyltransferase	IPR001594; IPR001594; IPR001594; IPR001594; IPR001594; IPR001594; IPR001594	Palmitoyltransferase, DHHC domain; Palmitoyltransferase, DHHC domain; Palmitoyltransferase, DHHC domain; Palmitoyltransferase, DHHC domain; Palmitoyltransferase, DHHC domain; Palmitoyltransferase, DHHC domain; Palmitoyltransferase, DHHC domain
hsd_id_Theobroma_cacao_888	XP_007019585.2; XP_017972452.1; XP_017975522.1; XP_017976875.1; XP_017980835.1; XP_017973218.1; XP_007040914.2; XP_017980609.1; XP_007037445.2; XP_017975402.1; XP_007043608.2; XP_007041171.1	586; 580; 577; 582; 634; 590; 516; 707; 716; 704; 728; 748	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_889	XP_007019599.1; XP_007019598.1	152; 152	Pfam	PF00416; PF00416	Ribosomal protein S13/S18; Ribosomal protein S13/S18	IPR001892; IPR001892	Ribosomal protein S13; Ribosomal protein S13
hsd_id_Theobroma_cacao_890	XP_007019613.2; XP_007019615.2; XP_007019618.2	457; 458; 502	Pfam	PF04864, PF04863; PF04863, PF04864; PF04863, PF04864	Allinase, Alliinase EGF-like domain; Alliinase EGF-like domain, Allinase; Alliinase EGF-like domain, Allinase	IPR006948, IPR006947; IPR006947, IPR006948; IPR006947, IPR006948	Alliinase, C-terminal, Alliinase, EGF-like domain; Alliinase, EGF-like domain, Alliinase, C-terminal; Alliinase, EGF-like domain, Alliinase, C-terminal
hsd_id_Theobroma_cacao_891	XP_007019619.1; XP_017979585.1	326; 324	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_892	XP_007019643.2; XP_017974413.1	205; 229	Pfam	PF00572; PF00572	Ribosomal protein L13; Ribosomal protein L13	IPR005822; IPR005822	Ribosomal protein L13; Ribosomal protein L13
hsd_id_Theobroma_cacao_893	XP_007019714.2; XP_017981376.1; XP_007039333.2; XP_017971934.1; XP_007020793.2; XP_017979493.1; XP_007040313.2; XP_017973583.1	413; 396; 402; 404; 406; 407; 344; 351	Pfam	PF01762, PF13334; PF01762, PF13334; PF01762, PF13334; PF13334, PF01762; PF01762, PF13334; PF13334, PF01762; PF01762, PF13334; PF13334, PF01762	Galactosyltransferase, Domain of unknown function (DUF4094); Galactosyltransferase, Domain of unknown function (DUF4094); Galactosyltransferase, Domain of unknown function (DUF4094); Domain of unknown function (DUF4094), Galactosyltransferase; Galactosyltransferase, Domain of unknown function (DUF4094); Domain of unknown function (DUF4094), Galactosyltransferase; Galactosyltransferase, Domain of unknown function (DUF4094); Domain of unknown function (DUF4094), Galactosyltransferase	IPR002659, IPR025298; IPR002659, IPR025298; IPR002659, IPR025298; IPR025298, IPR002659; IPR002659, IPR025298; IPR025298, IPR002659; IPR002659, IPR025298; IPR025298, IPR002659	Glycosyl transferase, family 31, Domain of unknown function DUF4094; Glycosyl transferase, family 31, Domain of unknown function DUF4094; Glycosyl transferase, family 31, Domain of unknown function DUF4094; Domain of unknown function DUF4094, Glycosyl transferase, family 31; Glycosyl transferase, family 31, Domain of unknown function DUF4094; Domain of unknown function DUF4094, Glycosyl transferase, family 31; Glycosyl transferase, family 31, Domain of unknown function DUF4094; Domain of unknown function DUF4094, Glycosyl transferase, family 31
hsd_id_Theobroma_cacao_894	XP_007019719.2; XP_017985425.1	702; 700	Pfam	PF00628; PF00628	PHD-finger; PHD-finger	IPR019787; IPR019787	Zinc finger, PHD-finger; Zinc finger, PHD-finger
hsd_id_Theobroma_cacao_895	XP_007019731.2; XP_007039051.2; XP_007023127.2	677; 594; 547	Pfam	PF07724, PF10431; PF07724, PF10431; PF10431, PF07724	AAA domain (Cdc48 subfamily), C-terminal, D2-small domain, of ClpB protein; AAA domain (Cdc48 subfamily), C-terminal, D2-small domain, of ClpB protein; C-terminal, D2-small domain, of ClpB protein, AAA domain (Cdc48 subfamily)	IPR003959, IPR019489; IPR003959, IPR019489; IPR019489, IPR003959	ATPase, AAA-type, core, Clp ATPase, C-terminal; ATPase, AAA-type, core, Clp ATPase, C-terminal; Clp ATPase, C-terminal, ATPase, AAA-type, core
hsd_id_Theobroma_cacao_896	XP_007019740.2; XP_007025148.1; XP_007025143.2; XP_007021260.2; XP_007049308.1; XP_017976060.1	291; 264; 264; 264; 265; 336	Pfam	PF00504; PF00504; PF00504; PF00504; PF00504; PF00504	Chlorophyll A-B binding protein; Chlorophyll A-B binding protein; Chlorophyll A-B binding protein; Chlorophyll A-B binding protein; Chlorophyll A-B binding protein; Chlorophyll A-B binding protein	IPR022796; IPR022796; IPR022796; IPR022796; IPR022796; IPR022796	Chlorophyll A-B binding protein; Chlorophyll A-B binding protein; Chlorophyll A-B binding protein; Chlorophyll A-B binding protein; Chlorophyll A-B binding protein; Chlorophyll A-B binding protein
hsd_id_Theobroma_cacao_897	XP_007019742.2; XP_007019745.2; XP_017981113.1; XP_007048611.2; XP_007048609.1	336; 337; 335; 334; 356	Pfam	PF07859; PF07859; PF07859; PF07859; PF07859	alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR013094; IPR013094; IPR013094; IPR013094; IPR013094	Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3
hsd_id_Theobroma_cacao_898	XP_007019802.2; XP_007023625.2; XP_017984002.1; XP_017979420.1; XP_017979048.1	756; 761; 755; 758; 758	Pfam	PF13243, PF13249; PF13249, PF13243; PF13249, PF13243; PF13249, PF13243; PF13243, PF13249	Squalene-hopene cyclase C-terminal domain, Squalene-hopene cyclase N-terminal domain; Squalene-hopene cyclase N-terminal domain, Squalene-hopene cyclase C-terminal domain; Squalene-hopene cyclase N-terminal domain, Squalene-hopene cyclase C-terminal domain; Squalene-hopene cyclase N-terminal domain, Squalene-hopene cyclase C-terminal domain; Squalene-hopene cyclase C-terminal domain, Squalene-hopene cyclase N-terminal domain	IPR032696, IPR032697; IPR032697, IPR032696; IPR032697, IPR032696; IPR032697, IPR032696; IPR032696, IPR032697	Squalene cyclase, C-terminal, Squalene cyclase, N-terminal; Squalene cyclase, N-terminal, Squalene cyclase, C-terminal; Squalene cyclase, N-terminal, Squalene cyclase, C-terminal; Squalene cyclase, N-terminal, Squalene cyclase, C-terminal; Squalene cyclase, C-terminal, Squalene cyclase, N-terminal
hsd_id_Theobroma_cacao_899	XP_007019807.2; XP_017981013.1; XP_007019853.1	358; 383; 354	Pfam	PF02365; PF02365; PF02365	No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein	IPR003441; IPR003441; IPR003441	NAC domain; NAC domain; NAC domain
hsd_id_Theobroma_cacao_900	XP_007019836.1; XP_017980777.1	339; 339	Pfam	PF00491; PF00491	Arginase family; Arginase family	IPR006035; IPR006035	Ureohydrolase; Ureohydrolase
hsd_id_Theobroma_cacao_901	XP_007019849.1; XP_017979904.1	260; 183	Pfam	PF04720; PF04720	PDDEXK-like family of unknown function; PDDEXK-like family of unknown function	IPR006502; IPR006502	Protein of unknown function PDDEXK-like; Protein of unknown function PDDEXK-like
hsd_id_Theobroma_cacao_902	XP_007019861.2; XP_017980916.1; XP_017984439.1; XP_017984292.1; XP_017974570.1	384; 442; 328; 262; 300	Pfam	PF03107; PF03107; PF03107; PF03107; PF03107	C1 domain; C1 domain; C1 domain; C1 domain; C1 domain	IPR004146; IPR004146; IPR004146; IPR004146; IPR004146	DC1; DC1; DC1; DC1; DC1
hsd_id_Theobroma_cacao_903	XP_007019872.1; XP_007041164.1	113; 112	Pfam	PF00034; PF00034	Cytochrome c; Cytochrome c	IPR009056; IPR009056	Cytochrome c-like domain; Cytochrome c-like domain
hsd_id_Theobroma_cacao_904	XP_007019881.2; XP_017970912.1; XP_017975349.1	948; 952; 969	Pfam	PF04685, PF12215; PF12215, PF04685; PF12215, PF04685	Glycosyl-hydrolase family 116, catalytic region, beta-glucosidase 2, glycosyl-hydrolase family 116 N-term; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term, Glycosyl-hydrolase family 116, catalytic region; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term, Glycosyl-hydrolase family 116, catalytic region	IPR006775, IPR024462; IPR024462, IPR006775; IPR024462, IPR006775	Glycosyl-hydrolase family 116, catalytic region, Glycosyl-hydrolase family 116, N-terminal; Glycosyl-hydrolase family 116, N-terminal, Glycosyl-hydrolase family 116, catalytic region; Glycosyl-hydrolase family 116, N-terminal, Glycosyl-hydrolase family 116, catalytic region
hsd_id_Theobroma_cacao_905	XP_007019913.1; XP_017974184.1	140; 135	Pfam	PF04178; PF04178	Got1/Sft2-like family; Got1/Sft2-like family	IPR007305; IPR007305	Vesicle transport protein, Got1/SFT2-like; Vesicle transport protein, Got1/SFT2-like
hsd_id_Theobroma_cacao_906	XP_007019933.2; XP_007022852.2	920; 920	Pfam	PF01031, PF02212, PF00350, PF00169; PF02212, PF00169, PF01031, PF00350	Dynamin central region, Dynamin GTPase effector domain, Dynamin family, PH domain; Dynamin GTPase effector domain, PH domain, Dynamin central region, Dynamin family	IPR000375, IPR003130, IPR045063, IPR001849; IPR003130, IPR001849, IPR000375, IPR045063	Dynamin stalk domain, Dynamin GTPase effector, Dynamin, N-terminal, Pleckstrin homology domain; Dynamin GTPase effector, Pleckstrin homology domain, Dynamin stalk domain, Dynamin, N-terminal
hsd_id_Theobroma_cacao_907	XP_007019954.1; XP_017970883.1	471; 484	Pfam	PF00364, PF02817, PF00198; PF00198, PF00364, PF02817	Biotin-requiring enzyme, e3 binding domain, 2-oxoacid dehydrogenases acyltransferase (catalytic domain); 2-oxoacid dehydrogenases acyltransferase (catalytic domain), Biotin-requiring enzyme, e3 binding domain	IPR000089, IPR004167, IPR001078; IPR001078, IPR000089, IPR004167	Biotin/lipoyl attachment, Peripheral subunit-binding domain, 2-oxoacid dehydrogenase acyltransferase, catalytic domain; 2-oxoacid dehydrogenase acyltransferase, catalytic domain, Biotin/lipoyl attachment, Peripheral subunit-binding domain
hsd_id_Theobroma_cacao_908	XP_007019972.1; XP_007019973.2	102; 92	Pfam	PF02704; PF02704	Gibberellin regulated protein; Gibberellin regulated protein	IPR003854; IPR003854	Gibberellin regulated protein; Gibberellin regulated protein
hsd_id_Theobroma_cacao_909	XP_007019974.2; XP_007017801.1; XP_007044512.2; XP_007046699.1; XP_007042576.1; XP_007017800.1; XP_007047444.2; XP_017981553.1; XP_007034357.2; XP_007028593.1; XP_007015173.2; XP_007032998.2; XP_017974358.1; XP_007032535.2	110; 100; 106; 105; 90; 102; 107; 88; 123; 114; 112; 95; 95; 106	Pfam	PF02704; PF02704; PF02704; PF02704; PF02704; PF02704; PF02704; PF02704; PF02704; PF02704; PF02704; PF02704; PF02704; PF02704	Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein	IPR003854; IPR003854; IPR003854; IPR003854; IPR003854; IPR003854; IPR003854; IPR003854; IPR003854; IPR003854; IPR003854; IPR003854; IPR003854; IPR003854	Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein; Gibberellin regulated protein
hsd_id_Theobroma_cacao_910	XP_007019985.1; XP_007040635.1	278; 251	Pfam	PF09335; PF09335	SNARE associated Golgi protein; SNARE associated Golgi protein	IPR032816; IPR032816	SNARE associated Golgi protein; SNARE associated Golgi protein
hsd_id_Theobroma_cacao_911	XP_007019986.2; XP_007025620.2	225; 257	Pfam	PF00829; PF00829	Ribosomal prokaryotic L21 protein; Ribosomal prokaryotic L21 protein	IPR028909; IPR028909	Ribosomal protein L21-like; Ribosomal protein L21-like
hsd_id_Theobroma_cacao_912	XP_007019990.2; XP_007048647.2; XP_017980942.1	503; 494; 500	Pfam	PF00069, PF13499; PF00069, PF13499; PF13499, PF00069	Protein kinase domain, EF-hand domain pair; Protein kinase domain, EF-hand domain pair; EF-hand domain pair, Protein kinase domain	IPR000719, IPR002048; IPR000719, IPR002048; IPR002048, IPR000719	Protein kinase domain, EF-hand domain; Protein kinase domain, EF-hand domain; EF-hand domain, Protein kinase domain
hsd_id_Theobroma_cacao_913	XP_007020002.2; XP_007020007.1	430; 431	Pfam	PF13848, PF00085; PF00085, PF13848	Thioredoxin-like domain, Thioredoxin; Thioredoxin, Thioredoxin-like domain	-, IPR013766; IPR013766, -	-, Thioredoxin domain; Thioredoxin domain, -
hsd_id_Theobroma_cacao_914	XP_007020008.2; XP_017984363.1	586; 632	Pfam	PF01743; PF01743	Poly A polymerase head domain; Poly A polymerase head domain	IPR002646; IPR002646	Poly A polymerase, head domain; Poly A polymerase, head domain
hsd_id_Theobroma_cacao_915	XP_007020015.1; XP_007050968.2	789; 813	Pfam	PF04091; PF04091	Exocyst complex subunit Sec15-like; Exocyst complex subunit Sec15-like	IPR007225; IPR007225	Exocyst complex component EXOC6/Sec15; Exocyst complex component EXOC6/Sec15
hsd_id_Theobroma_cacao_916	XP_007020018.2; XP_007029347.2	254; 248	Pfam	PF03168; PF03168	Late embryogenesis abundant protein; Late embryogenesis abundant protein	IPR004864; IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup
hsd_id_Theobroma_cacao_917	XP_007020020.1; XP_007037311.2; XP_007040099.2	409; 399; 390	Pfam	PF03634; PF03634; PF03634	TCP family transcription factor; TCP family transcription factor; TCP family transcription factor	IPR017887; IPR017887; IPR017887	Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup
hsd_id_Theobroma_cacao_918	XP_007020050.1; XP_007022621.2; XP_007046627.1; XP_007041813.1; XP_007024458.2	171; 170; 156; 156; 152	Pfam	PF03931, PF01466; PF01466, PF03931; PF01466, PF03931; PF01466, PF03931; PF03931, PF01466	Skp1 family, tetramerisation domain, Skp1 family, dimerisation domain; Skp1 family, dimerisation domain, Skp1 family, tetramerisation domain; Skp1 family, dimerisation domain, Skp1 family, tetramerisation domain; Skp1 family, dimerisation domain, Skp1 family, tetramerisation domain; Skp1 family, tetramerisation domain, Skp1 family, dimerisation domain	IPR016073, IPR016072; IPR016072, IPR016073; IPR016072, IPR016073; IPR016072, IPR016073; IPR016073, IPR016072	SKP1 component, POZ domain, SKP1 component, dimerisation; SKP1 component, dimerisation, SKP1 component, POZ domain; SKP1 component, dimerisation, SKP1 component, POZ domain; SKP1 component, dimerisation, SKP1 component, POZ domain; SKP1 component, POZ domain, SKP1 component, dimerisation
hsd_id_Theobroma_cacao_919	XP_007020069.2; XP_007024739.2; XP_017983385.1	911; 812; 874	Pfam	PF02383; PF02383; PF02383	SacI homology domain; SacI homology domain; SacI homology domain	IPR002013; IPR002013; IPR002013	SAC domain; SAC domain; SAC domain
hsd_id_Theobroma_cacao_920	XP_007020074.2; XP_007020187.2; XP_007028932.2; XP_017976607.1; XP_007028928.2	523; 522; 512; 514; 520	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_921	XP_007020090.2; XP_007020092.2; XP_007020095.2; XP_007038859.2; XP_017972984.1	470; 470; 452; 477; 480	Pfam	PF00201; PF00201; PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_922	XP_007020096.2; XP_017983588.1	302; 303	Pfam	PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_923	XP_007020112.2; XP_017981767.1	571; 575	Pfam	PF00854; PF00854	POT family; POT family	IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_924	XP_007020114.2; XP_017969920.1; XP_007020120.2; XP_017977993.1	625; 610; 607; 509	Pfam	PF03765, PF00650; PF00650, PF03765; PF03765, PF00650; PF00650, PF03765	CRAL/TRIO, N-terminal domain, CRAL/TRIO domain; CRAL/TRIO domain, CRAL/TRIO, N-terminal domain; CRAL/TRIO, N-terminal domain, CRAL/TRIO domain; CRAL/TRIO domain, CRAL/TRIO, N-terminal domain	IPR011074, IPR001251; IPR001251, IPR011074; IPR011074, IPR001251; IPR001251, IPR011074	CRAL/TRIO, N-terminal domain, CRAL-TRIO lipid binding domain; CRAL-TRIO lipid binding domain, CRAL/TRIO, N-terminal domain; CRAL/TRIO, N-terminal domain, CRAL-TRIO lipid binding domain; CRAL-TRIO lipid binding domain, CRAL/TRIO, N-terminal domain
hsd_id_Theobroma_cacao_925	XP_007020151.2; XP_017981118.1; XP_017981027.1; XP_017982568.1; XP_007023618.1; XP_017978138.1; XP_017982068.1; XP_017978019.1	476; 476; 476; 493; 478; 482; 480; 480	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_926	XP_007020190.1; XP_007050893.1; XP_007030017.2	182; 180; 153	Pfam	PF04969; PF04969; PF04969	CS domain; CS domain; CS domain	IPR007052; IPR007052; IPR007052	CS domain; CS domain; CS domain
hsd_id_Theobroma_cacao_927	XP_007020192.1; XP_007046113.1; XP_017970286.1; XP_007046119.1; XP_007046115.2	257; 258; 270; 259; 261	Pfam	PF04116; PF04116; PF04116; PF04116; PF04116	Fatty acid hydroxylase superfamily; Fatty acid hydroxylase superfamily; Fatty acid hydroxylase superfamily; Fatty acid hydroxylase superfamily; Fatty acid hydroxylase superfamily	IPR006694; IPR006694; IPR006694; IPR006694; IPR006694	Fatty acid hydroxylase; Fatty acid hydroxylase; Fatty acid hydroxylase; Fatty acid hydroxylase; Fatty acid hydroxylase
hsd_id_Theobroma_cacao_928	XP_007020206.2; XP_017975129.1	360; 363	Pfam	PF01408; PF01408	Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, NAD-binding Rossmann fold	IPR000683; IPR000683	Gfo/Idh/MocA-like oxidoreductase, N-terminal; Gfo/Idh/MocA-like oxidoreductase, N-terminal
hsd_id_Theobroma_cacao_929	XP_007020207.2; XP_007048116.2; XP_007051469.2; XP_017973443.1; XP_007045833.2	534; 539; 535; 530; 518	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_930	XP_007020208.2; XP_017981572.1; XP_017980838.1; XP_007020209.2; XP_007020214.1	569; 568; 568; 565; 565	Pfam	PF00394, PF07731, PF07732; PF07732, PF00394, PF07731; PF00394, PF07731, PF07732; PF00394, PF07732, PF07731; PF07731, PF00394, PF07732	Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase	IPR001117, IPR011706, IPR011707; IPR011707, IPR001117, IPR011706; IPR001117, IPR011706, IPR011707; IPR001117, IPR011707, IPR011706; IPR011706, IPR001117, IPR011707	Multicopper oxidase, type 1, Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl; Multicopper oxidase, N-termianl, Multicopper oxidase, type 1, Multicopper oxidase, C-terminal; Multicopper oxidase, type 1, Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl; Multicopper oxidase, type 1, Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal; Multicopper oxidase, C-terminal, Multicopper oxidase, type 1, Multicopper oxidase, N-termianl
hsd_id_Theobroma_cacao_931	XP_007020222.2; XP_007046560.2	530; 447	Pfam	PF03398; PF03398	Regulator of Vps4 activity in the MVB pathway; Regulator of Vps4 activity in the MVB pathway	IPR005061; IPR005061	Vacuolar protein sorting-associated protein Ist1; Vacuolar protein sorting-associated protein Ist1
hsd_id_Theobroma_cacao_932	XP_007020241.2; XP_007020243.2; XP_007020246.2	836; 837; 838	Pfam	PF00069, PF01453, PF00954; PF01453, PF00954, PF00069; PF00954, PF01453, PF00069	Protein kinase domain, D-mannose binding lectin, S-locus glycoprotein domain; D-mannose binding lectin, S-locus glycoprotein domain, Protein kinase domain; S-locus glycoprotein domain, D-mannose binding lectin, Protein kinase domain	IPR000719, IPR001480, IPR000858; IPR001480, IPR000858, IPR000719; IPR000858, IPR001480, IPR000719	Protein kinase domain, Bulb-type lectin domain, S-locus glycoprotein domain; Bulb-type lectin domain, S-locus glycoprotein domain, Protein kinase domain; S-locus glycoprotein domain, Bulb-type lectin domain, Protein kinase domain
hsd_id_Theobroma_cacao_933	XP_007020248.2; XP_007040126.1; XP_007038589.2; XP_007018359.2; XP_017982115.1; XP_007047235.2; XP_017984893.1; XP_017975882.1	501; 511; 553; 549; 532; 522; 518; 466	Pfam	PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554	MatE; MatE; MatE; MatE; MatE; MatE; MatE; MatE	IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528	Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein
hsd_id_Theobroma_cacao_934	XP_007020280.2; XP_007026460.2; XP_017977441.1; XP_017978832.1; XP_017983306.1	488; 491; 510; 495; 430	Pfam	PF03094; PF03094; PF03094; PF03094; PF03094	Mlo family; Mlo family; Mlo family; Mlo family; Mlo family	IPR004326; IPR004326; IPR004326; IPR004326; IPR004326	Mlo-related protein; Mlo-related protein; Mlo-related protein; Mlo-related protein; Mlo-related protein
hsd_id_Theobroma_cacao_935	XP_007020299.1; XP_017974263.1; XP_007029326.1	166; 258; 166	Pfam	PF03737; PF03737; PF03737	Aldolase/RraA; Aldolase/RraA; Aldolase/RraA	IPR005493; IPR005493; IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein; Ribonuclease E inhibitor RraA/RraA-like protein; Ribonuclease E inhibitor RraA/RraA-like protein
hsd_id_Theobroma_cacao_936	XP_007020319.2; XP_017974861.1	141; 142	Pfam	PF00833; PF00833	Ribosomal S17; Ribosomal S17	IPR001210; IPR001210	Ribosomal protein S17e; Ribosomal protein S17e
hsd_id_Theobroma_cacao_937	XP_007020358.2; XP_017980439.1; XP_017977032.1; XP_007037792.2; XP_017979160.1	756; 761; 771; 748; 799	Pfam	PF05691; PF05691; PF05691; PF05691; PF05691	Raffinose synthase or seed imbibition protein Sip1; Raffinose synthase or seed imbibition protein Sip1; Raffinose synthase or seed imbibition protein Sip1; Raffinose synthase or seed imbibition protein Sip1; Raffinose synthase or seed imbibition protein Sip1	IPR008811; IPR008811; IPR008811; IPR008811; IPR008811	Glycosyl hydrolases 36; Glycosyl hydrolases 36; Glycosyl hydrolases 36; Glycosyl hydrolases 36; Glycosyl hydrolases 36
hsd_id_Theobroma_cacao_938	XP_007020393.1; XP_007027627.1; XP_007046747.2; XP_007042028.2; XP_007044108.1	357; 358; 396; 398; 394	Pfam	PF00274; PF00274; PF00274; PF00274; PF00274	Fructose-bisphosphate aldolase class-I; Fructose-bisphosphate aldolase class-I; Fructose-bisphosphate aldolase class-I; Fructose-bisphosphate aldolase class-I; Fructose-bisphosphate aldolase class-I	IPR000741; IPR000741; IPR000741; IPR000741; IPR000741	Fructose-bisphosphate aldolase, class-I; Fructose-bisphosphate aldolase, class-I; Fructose-bisphosphate aldolase, class-I; Fructose-bisphosphate aldolase, class-I; Fructose-bisphosphate aldolase, class-I
hsd_id_Theobroma_cacao_939	XP_007020403.1; XP_007049426.2	224; 225	Pfam	PF04178; PF04178	Got1/Sft2-like family; Got1/Sft2-like family	IPR007305; IPR007305	Vesicle transport protein, Got1/SFT2-like; Vesicle transport protein, Got1/SFT2-like
hsd_id_Theobroma_cacao_940	XP_007020406.1; XP_007040338.1; XP_007038813.2	699; 705; 703	Pfam	PF02518, PF00183; PF02518, PF00183; PF00183, PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Hsp90 protein; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Hsp90 protein; Hsp90 protein, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	IPR003594, IPR001404; IPR003594, IPR001404; IPR001404, IPR003594	Histidine kinase/HSP90-like ATPase, Heat shock protein Hsp90 family; Histidine kinase/HSP90-like ATPase, Heat shock protein Hsp90 family; Heat shock protein Hsp90 family, Histidine kinase/HSP90-like ATPase
hsd_id_Theobroma_cacao_941	XP_007020420.2; XP_017978804.1	342; 342	Pfam	PF00348; PF00348	Polyprenyl synthetase; Polyprenyl synthetase	IPR000092; IPR000092	Polyprenyl synthetase; Polyprenyl synthetase
hsd_id_Theobroma_cacao_942	XP_007020434.1; XP_017969372.1; XP_007031581.2; XP_017981324.1; XP_007051437.2; XP_007028960.2	348; 344; 368; 331; 313; 358	Pfam	PF00076; PF00076; PF00076; PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504; IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_943	XP_007020451.2; XP_017979286.1	337; 334	Pfam	PF03765, PF00650; PF00650, PF03765	CRAL/TRIO, N-terminal domain, CRAL/TRIO domain; CRAL/TRIO domain, CRAL/TRIO, N-terminal domain	IPR011074, IPR001251; IPR001251, IPR011074	CRAL/TRIO, N-terminal domain, CRAL-TRIO lipid binding domain; CRAL-TRIO lipid binding domain, CRAL/TRIO, N-terminal domain
hsd_id_Theobroma_cacao_944	XP_007020469.2; XP_017984273.1; XP_007046547.1	77; 109; 71	Pfam	PF05627; PF05627; PF05627	Cleavage site for pathogenic type III effector avirulence factor Avr; Cleavage site for pathogenic type III effector avirulence factor Avr; Cleavage site for pathogenic type III effector avirulence factor Avr	IPR008700; IPR008700; IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site; RIN4, pathogenic type III effector avirulence factor Avr cleavage site; RIN4, pathogenic type III effector avirulence factor Avr cleavage site
hsd_id_Theobroma_cacao_945	XP_007020482.2; XP_017980147.1; XP_017980114.1; XP_007020483.2; XP_017984370.1	320; 325; 324; 295; 351	Pfam	PF08711; PF08711; PF08711; PF08711; PF08711	TFIIS helical bundle-like domain; TFIIS helical bundle-like domain; TFIIS helical bundle-like domain; TFIIS helical bundle-like domain; TFIIS helical bundle-like domain	IPR017923; IPR017923; IPR017923; IPR017923; IPR017923	Transcription factor IIS, N-terminal; Transcription factor IIS, N-terminal; Transcription factor IIS, N-terminal; Transcription factor IIS, N-terminal; Transcription factor IIS, N-terminal
hsd_id_Theobroma_cacao_946	XP_007020496.2; XP_017981776.1	252; 219	Pfam	PF00300; PF00300	Histidine phosphatase superfamily (branch 1); Histidine phosphatase superfamily (branch 1)	IPR013078; IPR013078	Histidine phosphatase superfamily, clade-1; Histidine phosphatase superfamily, clade-1
hsd_id_Theobroma_cacao_947	XP_007020499.2; XP_007049368.2	412; 399	Pfam	PF02469; PF02469	Fasciclin domain; Fasciclin domain	IPR000782; IPR000782	FAS1 domain; FAS1 domain
hsd_id_Theobroma_cacao_948	XP_007020501.2; XP_007037815.1; XP_007031685.1; XP_007044917.1	397; 404; 405; 406	Pfam	PF00544; PF00544; PF00544; PF00544	Pectate lyase; Pectate lyase; Pectate lyase; Pectate lyase	IPR002022; IPR002022; IPR002022; IPR002022	Pectate lyase; Pectate lyase; Pectate lyase; Pectate lyase
hsd_id_Theobroma_cacao_949	XP_007020516.2; XP_017980257.1	349; 349	Pfam	PF07885; PF07885	Ion channel; Ion channel	IPR013099; IPR013099	Potassium channel domain; Potassium channel domain
hsd_id_Theobroma_cacao_950	XP_007020525.2; XP_017980253.1; XP_017978372.1	355; 355; 361	Pfam	PF07885; PF07885; PF07885	Ion channel; Ion channel; Ion channel	IPR013099; IPR013099; IPR013099	Potassium channel domain; Potassium channel domain; Potassium channel domain
hsd_id_Theobroma_cacao_951	XP_007020552.2; XP_007020554.2; XP_007022417.2; XP_017975886.1; XP_007020553.2; XP_007033124.2; XP_017979617.1; XP_017980074.1; XP_017979574.1; XP_017969764.1; XP_007022425.2; XP_017980090.1; XP_017979590.1; XP_017980643.1; XP_017972422.1; XP_007044958.2	513; 541; 509; 509; 518; 509; 522; 508; 507; 519; 507; 502; 502; 501; 509; 521	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_952	XP_007020580.2; XP_017979646.1; XP_007020595.2; XP_017979649.1; XP_017979647.1; XP_017979643.1	729; 733; 734; 734; 735; 738	Pfam	PF00560, PF08263, PF13855; PF08263, PF13855, PF00560; PF00560, PF13855, PF08263; PF13855, PF00560, PF08263; PF08263, PF13855, PF00560; PF13855, PF08263, PF00560	Leucine Rich Repeat, Leucine rich repeat N-terminal domain, Leucine rich repeat; Leucine rich repeat N-terminal domain, Leucine rich repeat, Leucine Rich Repeat; Leucine Rich Repeat, Leucine rich repeat, Leucine rich repeat N-terminal domain; Leucine rich repeat, Leucine Rich Repeat, Leucine rich repeat N-terminal domain; Leucine rich repeat N-terminal domain, Leucine rich repeat, Leucine Rich Repeat; Leucine rich repeat, Leucine rich repeat N-terminal domain, Leucine Rich Repeat	IPR001611, IPR013210, IPR001611; IPR013210, IPR001611, IPR001611; IPR001611, IPR001611, IPR013210; IPR001611, IPR001611, IPR013210; IPR013210, IPR001611, IPR001611; IPR001611, IPR013210, IPR001611	Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat; Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat
hsd_id_Theobroma_cacao_953	XP_007020604.2; XP_007049318.2	568; 545	Pfam	PF12872, PF00076; PF12872, PF00076	OST-HTH/LOTUS domain, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); OST-HTH/LOTUS domain, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR025605, IPR000504; IPR025605, IPR000504	OST-HTH/LOTUS domain, RNA recognition motif domain; OST-HTH/LOTUS domain, RNA recognition motif domain
hsd_id_Theobroma_cacao_954	XP_007020645.1; XP_007049644.1	220; 219	Pfam	PF01201; PF01201	Ribosomal protein S8e; Ribosomal protein S8e	IPR022309; IPR022309	Ribosomal protein S8e/ribosomal biogenesis NSA2; Ribosomal protein S8e/ribosomal biogenesis NSA2
hsd_id_Theobroma_cacao_955	XP_007020648.2; XP_017975926.1	302; 331	Pfam	PF05726, PF02678; PF05726, PF02678	Pirin C-terminal cupin domain, Pirin; Pirin C-terminal cupin domain, Pirin	IPR008778, IPR003829; IPR008778, IPR003829	Pirin, C-terminal domain, Pirin, N-terminal domain; Pirin, C-terminal domain, Pirin, N-terminal domain
hsd_id_Theobroma_cacao_956	XP_007020650.2; XP_017974289.1; XP_017979556.1; XP_007031522.2; XP_017980105.1; XP_007020661.1; XP_017979529.1; XP_007026258.1; XP_007052430.2; XP_017975237.1	353; 349; 337; 350; 355; 350; 371; 376; 371; 371	Pfam	PF13813; PF13813; PF13813; PF13813; PF13813; PF13813; PF13813; PF13813; PF13813; PF13813	Membrane bound O-acyl transferase family; Membrane bound O-acyl transferase family; Membrane bound O-acyl transferase family; Membrane bound O-acyl transferase family; Membrane bound O-acyl transferase family; Membrane bound O-acyl transferase family; Membrane bound O-acyl transferase family; Membrane bound O-acyl transferase family; Membrane bound O-acyl transferase family; Membrane bound O-acyl transferase family	IPR032805; IPR032805; IPR032805; IPR032805; IPR032805; IPR032805; IPR032805; IPR032805; IPR032805; IPR032805	Wax synthase domain; Wax synthase domain; Wax synthase domain; Wax synthase domain; Wax synthase domain; Wax synthase domain; Wax synthase domain; Wax synthase domain; Wax synthase domain; Wax synthase domain
hsd_id_Theobroma_cacao_957	XP_007020651.2; XP_017979832.1	416; 394	Pfam	PF00295; PF00295	Glycosyl hydrolases family 28; Glycosyl hydrolases family 28	IPR000743; IPR000743	Glycoside hydrolase, family 28; Glycoside hydrolase, family 28
hsd_id_Theobroma_cacao_958	XP_007020658.2; XP_017974620.1; XP_017974132.1	692; 695; 660	Pfam	PF00307; PF00307; PF00307	Calponin homology (CH) domain; Calponin homology (CH) domain; Calponin homology (CH) domain	IPR001715; IPR001715; IPR001715	Calponin homology domain; Calponin homology domain; Calponin homology domain
hsd_id_Theobroma_cacao_959	XP_007020675.2; XP_007049242.2	535; 540	Pfam	PF02969, PF07571; PF07571, PF02969	TATA box binding protein associated factor (TAF), TAF6 C-terminal HEAT repeat domain; TAF6 C-terminal HEAT repeat domain, TATA box binding protein associated factor (TAF)	IPR004823, IPR011442; IPR011442, IPR004823	TATA box binding protein associated factor (TAF), TAF6, C-terminal HEAT repeat domain; TAF6, C-terminal HEAT repeat domain, TATA box binding protein associated factor (TAF)
hsd_id_Theobroma_cacao_960	XP_007020689.1; XP_007044439.1; XP_007099754.2; XP_007029090.1; XP_017983489.1; XP_017971292.1	305; 306; 306; 313; 312; 303	Pfam	PF00149; PF00149; PF00149; PF00149; PF00149; PF00149	Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase	IPR004843; IPR004843; IPR004843; IPR004843; IPR004843; IPR004843	Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type
hsd_id_Theobroma_cacao_961	XP_007020691.2; XP_007049247.2	502; 499	Pfam	PF01273, PF02886; PF01273, PF02886	LBP / BPI / CETP family, N-terminal domain, LBP / BPI / CETP family, C-terminal domain; LBP / BPI / CETP family, N-terminal domain, LBP / BPI / CETP family, C-terminal domain	IPR017942, IPR001124; IPR017942, IPR001124	Lipid-binding serum glycoprotein, N-terminal, Lipid-binding serum glycoprotein, C-terminal; Lipid-binding serum glycoprotein, N-terminal, Lipid-binding serum glycoprotein, C-terminal
hsd_id_Theobroma_cacao_962	XP_007020696.1; XP_017984152.1; XP_007045448.2	583; 565; 607	Pfam	PF03999; PF03999; PF03999	Microtubule associated protein (MAP65/ASE1 family); Microtubule associated protein (MAP65/ASE1 family); Microtubule associated protein (MAP65/ASE1 family)	-; -; -	-; -; -
hsd_id_Theobroma_cacao_963	XP_007020701.2; XP_007026245.1	427; 423	Pfam	PF01148; PF01148	Cytidylyltransferase family; Cytidylyltransferase family	-; -	-; -
hsd_id_Theobroma_cacao_964	XP_007020707.1; XP_017974736.1; XP_007049207.1; XP_017970479.1	349; 357; 350; 347	Pfam	PF00657; PF00657; PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087; IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_965	XP_007020713.2; XP_007026218.2	433; 430	Pfam	PF12056; PF12056	Protein of unknown function (DUF3537); Protein of unknown function (DUF3537)	IPR021924; IPR021924	Protein of unknown function DUF3537; Protein of unknown function DUF3537
hsd_id_Theobroma_cacao_966	XP_007020721.2; XP_017980180.1	525; 519	Pfam	PF00759; PF00759	Glycosyl hydrolase family 9; Glycosyl hydrolase family 9	IPR001701; IPR001701	Glycoside hydrolase family 9; Glycoside hydrolase family 9
hsd_id_Theobroma_cacao_967	XP_007020730.1; XP_007033043.2	446; 448	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_968	XP_007020732.1; XP_007049120.1; XP_017971823.1	168; 174; 176	Pfam	PF02681; PF02681; PF02681	Divergent PAP2 family; Divergent PAP2 family; Divergent PAP2 family	IPR003832; IPR003832; IPR003832	Protein of unknown function DUF212; Protein of unknown function DUF212; Protein of unknown function DUF212
hsd_id_Theobroma_cacao_969	XP_007020768.2; XP_017979126.1; XP_007049085.2; XP_017977346.1; XP_017974145.1; XP_007036024.2	514; 514; 514; 517; 507; 524	Pfam	PF03489, PF00026, PF05184; PF03489, PF05184, PF00026; PF03489, PF00026, PF05184; PF00026, PF05184, PF03489; PF05184, PF00026, PF03489; PF05184, PF00026, PF03489	Saposin-like type B, region 2, Eukaryotic aspartyl protease, Saposin-like type B, region 1; Saposin-like type B, region 2, Saposin-like type B, region 1, Eukaryotic aspartyl protease; Saposin-like type B, region 2, Eukaryotic aspartyl protease, Saposin-like type B, region 1; Eukaryotic aspartyl protease, Saposin-like type B, region 1, Saposin-like type B, region 2; Saposin-like type B, region 1, Eukaryotic aspartyl protease, Saposin-like type B, region 2; Saposin-like type B, region 1, Eukaryotic aspartyl protease, Saposin-like type B, region 2	IPR008138, IPR033121, IPR007856; IPR008138, IPR007856, IPR033121; IPR008138, IPR033121, IPR007856; IPR033121, IPR007856, IPR008138; IPR007856, IPR033121, IPR008138; IPR007856, IPR033121, IPR008138	Saposin B type, region 2, Peptidase family A1 domain, Saposin-like type B, region 1; Saposin B type, region 2, Saposin-like type B, region 1, Peptidase family A1 domain; Saposin B type, region 2, Peptidase family A1 domain, Saposin-like type B, region 1; Peptidase family A1 domain, Saposin-like type B, region 1, Saposin B type, region 2; Saposin-like type B, region 1, Peptidase family A1 domain, Saposin B type, region 2; Saposin-like type B, region 1, Peptidase family A1 domain, Saposin B type, region 2
hsd_id_Theobroma_cacao_970	XP_007020771.1; XP_007026122.2	468; 475	Pfam	PF00198, PF00364; PF00364, PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain), Biotin-requiring enzyme; Biotin-requiring enzyme, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)	IPR001078, IPR000089; IPR000089, IPR001078	2-oxoacid dehydrogenase acyltransferase, catalytic domain, Biotin/lipoyl attachment; Biotin/lipoyl attachment, 2-oxoacid dehydrogenase acyltransferase, catalytic domain
hsd_id_Theobroma_cacao_971	XP_007020808.2; XP_017980152.1; XP_007026083.1	377; 377; 375	Pfam	PF00231; PF00231; PF00231	ATP synthase; ATP synthase; ATP synthase	IPR000131; IPR000131; IPR000131	ATP synthase, F1 complex, gamma subunit; ATP synthase, F1 complex, gamma subunit; ATP synthase, F1 complex, gamma subunit
hsd_id_Theobroma_cacao_972	XP_007020809.2; XP_017980155.1; XP_017980156.1	177; 95; 74	Pfam	PF05071; PF05071; PF05071	NADH ubiquinone oxidoreductase subunit NDUFA12; NADH ubiquinone oxidoreductase subunit NDUFA12; NADH ubiquinone oxidoreductase subunit NDUFA12	IPR007763; IPR007763; IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
hsd_id_Theobroma_cacao_973	XP_007020819.2; XP_007021029.2; XP_017979977.1	112; 113; 113	Pfam	PF01253; PF01253; PF01253	Translation initiation factor SUI1; Translation initiation factor SUI1; Translation initiation factor SUI1	IPR001950; IPR001950; IPR001950	SUI1 domain; SUI1 domain; SUI1 domain
hsd_id_Theobroma_cacao_974	XP_007020825.2; XP_017979584.1; XP_017980173.1	812; 811; 812	Pfam	PF01453, PF00069; PF01453, PF00069; PF00069, PF01453	D-mannose binding lectin, Protein kinase domain; D-mannose binding lectin, Protein kinase domain; Protein kinase domain, D-mannose binding lectin	IPR001480, IPR000719; IPR001480, IPR000719; IPR000719, IPR001480	Bulb-type lectin domain, Protein kinase domain; Bulb-type lectin domain, Protein kinase domain; Protein kinase domain, Bulb-type lectin domain
hsd_id_Theobroma_cacao_975	XP_007020834.2; XP_017973797.1	423; 417	Pfam	PF00561; PF00561	alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR000073; IPR000073	Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1
hsd_id_Theobroma_cacao_976	XP_007020850.2; XP_007020851.2; XP_007024112.2	765; 764; 860	Pfam	PF00012; PF00012; PF00012	Hsp70 protein; Hsp70 protein; Hsp70 protein	IPR013126; IPR013126; IPR013126	Heat shock protein 70 family; Heat shock protein 70 family; Heat shock protein 70 family
hsd_id_Theobroma_cacao_977	XP_007020894.2; XP_007027702.2; XP_007027701.2	435; 430; 505	Pfam	PF00149, PF16656, PF14008; PF16656, PF14008, PF00149; PF00149, PF16656, PF14008	Calcineurin-like phosphoesterase, Purple acid Phosphatase, N-terminal domain, Iron/zinc purple acid phosphatase-like protein C; Purple acid Phosphatase, N-terminal domain, Iron/zinc purple acid phosphatase-like protein C, Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase, Purple acid Phosphatase, N-terminal domain, Iron/zinc purple acid phosphatase-like protein C	IPR004843, IPR015914, IPR025733; IPR015914, IPR025733, IPR004843; IPR004843, IPR015914, IPR025733	Calcineurin-like phosphoesterase domain, ApaH type, Purple acid phosphatase, N-terminal, Iron/zinc purple acid phosphatase-like C-terminal domain; Purple acid phosphatase, N-terminal, Iron/zinc purple acid phosphatase-like C-terminal domain, Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type, Purple acid phosphatase, N-terminal, Iron/zinc purple acid phosphatase-like C-terminal domain
hsd_id_Theobroma_cacao_978	XP_007020904.2; XP_017978529.1	475; 452	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_979	XP_007020905.2; XP_007044484.2	525; 527	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_980	XP_007020962.2; XP_007026006.1	467; 463	Pfam	PF00291; PF00291	Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme	IPR001926; IPR001926	Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme
hsd_id_Theobroma_cacao_981	XP_007020963.1; XP_007026011.2; XP_007026013.2; XP_007029845.2	391; 394; 417; 423	Pfam	PF03151; PF03151; PF03151; PF03151	Triose-phosphate Transporter family; Triose-phosphate Transporter family; Triose-phosphate Transporter family; Triose-phosphate Transporter family	IPR004853; IPR004853; IPR004853; IPR004853	Sugar phosphate transporter domain; Sugar phosphate transporter domain; Sugar phosphate transporter domain; Sugar phosphate transporter domain
hsd_id_Theobroma_cacao_982	XP_007020969.2; XP_007022822.2	441; 444	Pfam	PF00646, PF07723, PF08387; PF00646, PF08387, PF07723	F-box domain, Leucine Rich Repeat, FBD; F-box domain, FBD, Leucine Rich Repeat	IPR001810, IPR013101, IPR006566; IPR001810, IPR006566, IPR013101	F-box domain, Leucine-rich repeat 2, FBD domain; F-box domain, FBD domain, Leucine-rich repeat 2
hsd_id_Theobroma_cacao_983	XP_007020972.2; XP_007020974.2	463; 463	Pfam	PF14541, PF14543; PF14541, PF14543	Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal	IPR032799, IPR032861; IPR032799, IPR032861	Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal
hsd_id_Theobroma_cacao_984	XP_007020975.2; XP_017970710.1	791; 794	Pfam	PF00999; PF00999	Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family	IPR006153; IPR006153	Cation/H+ exchanger; Cation/H+ exchanger
hsd_id_Theobroma_cacao_985	XP_007020985.2; XP_017979685.1	1432; 1448	Pfam	PF18052, PF00931; PF18052, PF00931	Rx N-terminal domain, NB-ARC domain; Rx N-terminal domain, NB-ARC domain	IPR041118, IPR002182; IPR041118, IPR002182	Rx, N-terminal, NB-ARC; Rx, N-terminal, NB-ARC
hsd_id_Theobroma_cacao_986	XP_007021016.2; XP_017979943.1; XP_017979683.1; XP_017979927.1	1024; 1071; 1152; 1129	Pfam	PF18052, PF00931; PF18052, PF00931; PF00931, PF18052; PF18052, PF00931	Rx N-terminal domain, NB-ARC domain; Rx N-terminal domain, NB-ARC domain; NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain	IPR041118, IPR002182; IPR041118, IPR002182; IPR002182, IPR041118; IPR041118, IPR002182	Rx, N-terminal, NB-ARC; Rx, N-terminal, NB-ARC; NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC
hsd_id_Theobroma_cacao_987	XP_007021020.2; XP_017981359.1	432; 426	Pfam	PF00566; PF00566	Rab-GTPase-TBC domain; Rab-GTPase-TBC domain	IPR000195; IPR000195	Rab-GTPase-TBC domain; Rab-GTPase-TBC domain
hsd_id_Theobroma_cacao_988	XP_007021021.1; XP_007035715.2; XP_007051034.2	662; 652; 655	Pfam	PF04833; PF04833; PF04833	COBRA-like protein; COBRA-like protein; COBRA-like protein	IPR006918; IPR006918; IPR006918	COBRA, plant; COBRA, plant; COBRA, plant
hsd_id_Theobroma_cacao_989	XP_007021022.1; XP_007025992.2	358; 387	Pfam	PF01946; PF01946	Thi4 family; Thi4 family	-; -	-; -
hsd_id_Theobroma_cacao_990	XP_007021035.1; XP_007021032.1; XP_007049060.2	381; 381; 381	Pfam	PF00240; PF00240; PF00240	Ubiquitin family; Ubiquitin family; Ubiquitin family	IPR000626; IPR000626; IPR000626	Ubiquitin-like domain; Ubiquitin-like domain; Ubiquitin-like domain
hsd_id_Theobroma_cacao_991	XP_007021074.1; XP_007049249.1	300; 353	Pfam	PF12706; PF12706	Beta-lactamase superfamily domain; Beta-lactamase superfamily domain	IPR001279; IPR001279	Metallo-beta-lactamase; Metallo-beta-lactamase
hsd_id_Theobroma_cacao_992	XP_007021088.2; XP_007025916.2	126; 125	Pfam	PF00085; PF00085	Thioredoxin; Thioredoxin	IPR013766; IPR013766	Thioredoxin domain; Thioredoxin domain
hsd_id_Theobroma_cacao_993	XP_007021090.2; XP_007025915.1	802; 803	Pfam	PF00225; PF00225	Kinesin motor domain; Kinesin motor domain	IPR001752; IPR001752	Kinesin motor domain; Kinesin motor domain
hsd_id_Theobroma_cacao_994	XP_007021102.2; XP_007043369.1; XP_007025912.1	206; 163; 172	Pfam	PF06749; PF06749; PF06749	Protein of unknown function (DUF1218); Protein of unknown function (DUF1218); Protein of unknown function (DUF1218)	IPR009606; IPR009606; IPR009606	Modifying wall lignin-1/2; Modifying wall lignin-1/2; Modifying wall lignin-1/2
hsd_id_Theobroma_cacao_995	XP_007021107.2; XP_007032904.2	431; 420	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_996	XP_007021120.2; XP_017979955.1; XP_017979694.1; XP_017979953.1; XP_017976143.1; XP_017979697.1	553; 553; 558; 557; 561; 627	Pfam	PF01397, PF03936; PF01397, PF03936; PF01397, PF03936; PF01397, PF03936; PF03936, PF01397; PF03936, PF01397	Terpene synthase, N-terminal domain, Terpene synthase family, metal binding domain; Terpene synthase, N-terminal domain, Terpene synthase family, metal binding domain; Terpene synthase, N-terminal domain, Terpene synthase family, metal binding domain; Terpene synthase, N-terminal domain, Terpene synthase family, metal binding domain; Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain; Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain	IPR001906, IPR005630; IPR001906, IPR005630; IPR001906, IPR005630; IPR001906, IPR005630; IPR005630, IPR001906; IPR005630, IPR001906	Terpene synthase, N-terminal domain, Terpene synthase, metal-binding domain; Terpene synthase, N-terminal domain, Terpene synthase, metal-binding domain; Terpene synthase, N-terminal domain, Terpene synthase, metal-binding domain; Terpene synthase, N-terminal domain, Terpene synthase, metal-binding domain; Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain; Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain
hsd_id_Theobroma_cacao_997	XP_007021135.2; XP_017978008.1; XP_017983015.1; XP_007047004.1; XP_007042732.2	203; 203; 295; 264; 269	Pfam	PF03358; PF03358; PF03358; PF03358; PF03358	NADPH-dependent FMN reductase; NADPH-dependent FMN reductase; NADPH-dependent FMN reductase; NADPH-dependent FMN reductase; NADPH-dependent FMN reductase	IPR005025; IPR005025; IPR005025; IPR005025; IPR005025	NADPH-dependent FMN reductase-like; NADPH-dependent FMN reductase-like; NADPH-dependent FMN reductase-like; NADPH-dependent FMN reductase-like; NADPH-dependent FMN reductase-like
hsd_id_Theobroma_cacao_998	XP_007021139.2; XP_017970114.1; XP_007042570.2; XP_017969901.1; XP_007043752.2; XP_007050866.2; XP_017979815.1; XP_017972084.1; XP_017979546.1; XP_017980372.1; XP_017979594.1; XP_017980760.1; XP_007021514.2; XP_007021516.2	611; 618; 598; 599; 646; 595; 616; 597; 581; 584; 595; 599; 594; 591	Pfam	PF03321; PF03321; PF03321; PF03321; PF03321; PF03321; PF03321; PF03321; PF03321; PF03321; PF03321; PF03321; PF03321; PF03321	GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter; GH3 auxin-responsive promoter	IPR004993; IPR004993; IPR004993; IPR004993; IPR004993; IPR004993; IPR004993; IPR004993; IPR004993; IPR004993; IPR004993; IPR004993; IPR004993; IPR004993	GH3 family; GH3 family; GH3 family; GH3 family; GH3 family; GH3 family; GH3 family; GH3 family; GH3 family; GH3 family; GH3 family; GH3 family; GH3 family; GH3 family
hsd_id_Theobroma_cacao_999	XP_007021140.2; XP_007035660.2; XP_007035204.2	225; 238; 241	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_1000	XP_007021153.2; XP_007021154.2	184; 178	Pfam	PF04043; PF04043	Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor	IPR006501; IPR006501	Pectinesterase inhibitor domain; Pectinesterase inhibitor domain
hsd_id_Theobroma_cacao_1001	XP_007021155.2; XP_007027095.1; XP_007027847.2; XP_017983100.1; XP_007034230.1; XP_017982698.1; XP_007049154.2; XP_007042188.2	156; 139; 129; 127; 139; 94; 137; 168	Pfam	PF00076; PF00076; PF00076; PF00076; PF00076; PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504; IPR000504; IPR000504; IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_1002	XP_007021183.2; XP_007025860.1; XP_007043395.2; XP_017978779.1; XP_007021226.1; XP_007051487.2	125; 112; 120; 113; 111; 126	Pfam	PF13833; PF13833; PF13833; PF13833; PF13833; PF13833	EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair	IPR002048; IPR002048; IPR002048; IPR002048; IPR002048; IPR002048	EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain
hsd_id_Theobroma_cacao_1003	XP_007021239.2; XP_017978712.1; XP_007025829.2	640; 630; 629	Pfam	PF03109; PF03109; PF03109	ABC1 family; ABC1 family; ABC1 family	IPR004147; IPR004147; IPR004147	UbiB domain; UbiB domain; UbiB domain
hsd_id_Theobroma_cacao_1004	XP_007021243.1; XP_017980554.1; XP_017980555.1; XP_017980553.1; XP_007043471.2; XP_007043469.2; XP_017980549.1; XP_017980551.1; XP_007043468.1	90; 88; 88; 88; 89; 87; 95; 90; 79	Pfam	PF12609; PF12609; PF12609; PF12609; PF12609; PF12609; PF12609; PF12609; PF12609	Wound-induced protein; Wound-induced protein; Wound-induced protein; Wound-induced protein; Wound-induced protein; Wound-induced protein; Wound-induced protein; Wound-induced protein; Wound-induced protein	IPR022251; IPR022251; IPR022251; IPR022251; IPR022251; IPR022251; IPR022251; IPR022251; IPR022251	Protein of unknown function wound-induced; Protein of unknown function wound-induced; Protein of unknown function wound-induced; Protein of unknown function wound-induced; Protein of unknown function wound-induced; Protein of unknown function wound-induced; Protein of unknown function wound-induced; Protein of unknown function wound-induced; Protein of unknown function wound-induced
hsd_id_Theobroma_cacao_1005	XP_007021247.2; XP_007025816.1; XP_007043474.2	259; 263; 270	Pfam	PF00635; PF00635; PF00635	MSP (Major sperm protein) domain; MSP (Major sperm protein) domain; MSP (Major sperm protein) domain	IPR000535; IPR000535; IPR000535	Major sperm protein (MSP) domain; Major sperm protein (MSP) domain; Major sperm protein (MSP) domain
hsd_id_Theobroma_cacao_1006	XP_007021254.2; XP_007032654.2; XP_017975828.1	694; 712; 704	Pfam	PF00520; PF00520; PF00520	Ion transport protein; Ion transport protein; Ion transport protein	IPR005821; IPR005821; IPR005821	Ion transport domain; Ion transport domain; Ion transport domain
hsd_id_Theobroma_cacao_1007	XP_007021261.2; XP_017971224.1	1221; 1176	Pfam	PF00612, PF00063; PF00612, PF00063	IQ calmodulin-binding motif, Myosin head (motor domain); IQ calmodulin-binding motif, Myosin head (motor domain)	IPR000048, IPR001609; IPR000048, IPR001609	IQ motif, EF-hand binding site, Myosin head, motor domain; IQ motif, EF-hand binding site, Myosin head, motor domain
hsd_id_Theobroma_cacao_1008	XP_007021280.2; XP_017980474.1; XP_007036596.2; XP_017980443.1; XP_017980456.1; XP_017979820.1; XP_017979701.1; XP_017979939.1; XP_017980458.1; XP_017979819.1; XP_017980444.1; XP_017980316.1; XP_017979713.1; XP_017980479.1; XP_017980472.1; XP_017980478.1	952; 945; 985; 986; 970; 972; 946; 976; 969; 987; 973; 1061; 905; 888; 963; 909	Pfam	PF13855, PF00931; PF00931, PF13855; PF13855, PF00931; PF00931, PF13855; PF00931, PF13855; PF00931, PF13855; PF00931, PF13855; PF00931, PF13855; PF13855, PF00931; PF13855, PF00931; PF00931, PF13855; PF00931, PF13855; PF13855, PF00931; PF00931, PF13855; PF00931, PF13855; PF00931, PF13855	Leucine rich repeat, NB-ARC domain; NB-ARC domain, Leucine rich repeat; Leucine rich repeat, NB-ARC domain; NB-ARC domain, Leucine rich repeat; NB-ARC domain, Leucine rich repeat; NB-ARC domain, Leucine rich repeat; NB-ARC domain, Leucine rich repeat; NB-ARC domain, Leucine rich repeat; Leucine rich repeat, NB-ARC domain; Leucine rich repeat, NB-ARC domain; NB-ARC domain, Leucine rich repeat; NB-ARC domain, Leucine rich repeat; Leucine rich repeat, NB-ARC domain; NB-ARC domain, Leucine rich repeat; NB-ARC domain, Leucine rich repeat; NB-ARC domain, Leucine rich repeat	IPR001611, IPR002182; IPR002182, IPR001611; IPR001611, IPR002182; IPR002182, IPR001611; IPR002182, IPR001611; IPR002182, IPR001611; IPR002182, IPR001611; IPR002182, IPR001611; IPR001611, IPR002182; IPR001611, IPR002182; IPR002182, IPR001611; IPR002182, IPR001611; IPR001611, IPR002182; IPR002182, IPR001611; IPR002182, IPR001611; IPR002182, IPR001611	Leucine-rich repeat, NB-ARC; NB-ARC, Leucine-rich repeat; Leucine-rich repeat, NB-ARC; NB-ARC, Leucine-rich repeat; NB-ARC, Leucine-rich repeat; NB-ARC, Leucine-rich repeat; NB-ARC, Leucine-rich repeat; NB-ARC, Leucine-rich repeat; Leucine-rich repeat, NB-ARC; Leucine-rich repeat, NB-ARC; NB-ARC, Leucine-rich repeat; NB-ARC, Leucine-rich repeat; Leucine-rich repeat, NB-ARC; NB-ARC, Leucine-rich repeat; NB-ARC, Leucine-rich repeat; NB-ARC, Leucine-rich repeat
hsd_id_Theobroma_cacao_1009	XP_007021304.1; XP_017970230.1	68; 68	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1010	XP_007021305.2; XP_017978732.1	381; 464	Pfam	PF00459; PF00459	Inositol monophosphatase family; Inositol monophosphatase family	IPR000760; IPR000760	Inositol monophosphatase-like; Inositol monophosphatase-like
hsd_id_Theobroma_cacao_1011	XP_007021315.1; XP_017971593.1	386; 407	Pfam	PF04117; PF04117	Mpv17 / PMP22 family; Mpv17 / PMP22 family	IPR007248; IPR007248	Mpv17/PMP22; Mpv17/PMP22
hsd_id_Theobroma_cacao_1012	XP_007021340.2; XP_017978762.1; XP_007044345.2	185; 180; 191	Pfam	PF06749; PF06749; PF06749	Protein of unknown function (DUF1218); Protein of unknown function (DUF1218); Protein of unknown function (DUF1218)	IPR009606; IPR009606; IPR009606	Modifying wall lignin-1/2; Modifying wall lignin-1/2; Modifying wall lignin-1/2
hsd_id_Theobroma_cacao_1013	XP_007021342.1; XP_007043552.2	399; 400	Pfam	PF00106; PF00106	short chain dehydrogenase; short chain dehydrogenase	IPR002347; IPR002347	Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR
hsd_id_Theobroma_cacao_1014	XP_007021344.2; XP_007021345.2	176; 176	Pfam	PF00407; PF00407	Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family	IPR000916; IPR000916	Bet v I/Major latex protein; Bet v I/Major latex protein
hsd_id_Theobroma_cacao_1015	XP_007021349.1; XP_007025670.2	254; 255	Pfam	PF12481; PF12481	Aluminium induced protein; Aluminium induced protein	IPR024286; IPR024286	Domain of unknown function DUF3700; Domain of unknown function DUF3700
hsd_id_Theobroma_cacao_1016	XP_007021350.2; XP_007025668.2	407; 397	Pfam	PF00571; PF00571	CBS domain; CBS domain	IPR000644; IPR000644	CBS domain; CBS domain
hsd_id_Theobroma_cacao_1017	XP_007021400.2; XP_017978727.1	506; 494	Pfam	PF13041, PF01535; PF13041, PF01535	PPR repeat family, PPR repeat; PPR repeat family, PPR repeat	IPR002885, IPR002885; IPR002885, IPR002885	Pentatricopeptide repeat, Pentatricopeptide repeat; Pentatricopeptide repeat, Pentatricopeptide repeat
hsd_id_Theobroma_cacao_1018	XP_007021407.1; XP_017979726.1; XP_007021452.2; XP_017979727.1; XP_017979728.1	118; 121; 118; 118; 117	Pfam	PF05617; PF05617; PF05617; PF05617; PF05617	Prolamin-like; Prolamin-like; Prolamin-like; Prolamin-like; Prolamin-like	IPR008502; IPR008502; IPR008502; IPR008502; IPR008502	Prolamin-like domain; Prolamin-like domain; Prolamin-like domain; Prolamin-like domain; Prolamin-like domain
hsd_id_Theobroma_cacao_1019	XP_007021413.2; XP_007043585.2; XP_017980814.1	180; 190; 186	Pfam	PF00085; PF00085; PF00085	Thioredoxin; Thioredoxin; Thioredoxin	IPR013766; IPR013766; IPR013766	Thioredoxin domain; Thioredoxin domain; Thioredoxin domain
hsd_id_Theobroma_cacao_1020	XP_007021469.2; XP_017976114.1; XP_007047327.2; XP_007024494.2	442; 445; 438; 444	Pfam	PF02458; PF02458; PF02458; PF02458	Transferase family; Transferase family; Transferase family; Transferase family	IPR003480; IPR003480; IPR003480; IPR003480	Transferase; Transferase; Transferase; Transferase
hsd_id_Theobroma_cacao_1021	XP_007021483.1; XP_017970292.1; XP_017978769.1	144; 144; 154	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_1022	XP_007021507.2; XP_017978749.1	242; 248	Pfam	PF05678; PF05678	VQ motif; VQ motif	IPR008889; IPR008889	VQ; VQ
hsd_id_Theobroma_cacao_1023	XP_007021524.2; XP_017980573.1; XP_017980706.1; XP_017980707.1; XP_007033754.2; XP_017979588.1	483; 484; 469; 469; 475; 399	Pfam	PF01554; PF01554; PF01554; PF01554; PF01554; PF01554	MatE; MatE; MatE; MatE; MatE; MatE	IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528	Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein
hsd_id_Theobroma_cacao_1024	XP_007021557.1; XP_007026733.2; XP_017985081.1; XP_017978611.1; XP_007039123.2; XP_017972346.1; XP_017972348.1; XP_007051489.2; XP_017972236.1	129; 129; 129; 111; 106; 106; 102; 107; 104	Pfam	PF03226; PF03226; PF03226; PF03226; PF03226; PF03226; PF03226; PF03226; PF03226	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly	IPR004910; IPR004910; IPR004910; IPR004910; IPR004910; IPR004910; IPR004910; IPR004910; IPR004910	Yippee/Mis18/Cereblon; Yippee/Mis18/Cereblon; Yippee/Mis18/Cereblon; Yippee/Mis18/Cereblon; Yippee/Mis18/Cereblon; Yippee/Mis18/Cereblon; Yippee/Mis18/Cereblon; Yippee/Mis18/Cereblon; Yippee/Mis18/Cereblon
hsd_id_Theobroma_cacao_1025	XP_007021578.2; XP_017979983.1; XP_017971216.1; XP_017971219.1	958; 980; 967; 950	Pfam	PF00931, PF18052; PF18052, PF00931; PF00931, PF18052; PF00931, PF18052	NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain; NB-ARC domain, Rx N-terminal domain; NB-ARC domain, Rx N-terminal domain	IPR002182, IPR041118; IPR041118, IPR002182; IPR002182, IPR041118; IPR002182, IPR041118	NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC; NB-ARC, Rx, N-terminal; NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_1026	XP_007021598.2; XP_017979996.1; XP_007025500.2; XP_007025501.2	486; 455; 456; 456	Pfam	PF00201; PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_1027	XP_007021602.1; XP_017980010.1; XP_007021604.2; XP_007025517.2	252; 252; 252; 234	Pfam	PF04654; PF04654; PF04654; PF04654	Protein of unknown function, DUF599; Protein of unknown function, DUF599; Protein of unknown function, DUF599; Protein of unknown function, DUF599	IPR006747; IPR006747; IPR006747; IPR006747	Protein of unknown function DUF599; Protein of unknown function DUF599; Protein of unknown function DUF599; Protein of unknown function DUF599
hsd_id_Theobroma_cacao_1028	XP_007021610.2; XP_017978955.1	88; 105	Pfam	PF05129; PF05129	Transcription elongation factor Elf1 like; Transcription elongation factor Elf1 like	IPR007808; IPR007808	Transcription elongation factor 1; Transcription elongation factor 1
hsd_id_Theobroma_cacao_1029	XP_007021661.2; XP_007040917.2	483; 488	Pfam	PF00534, PF13439; PF13439, PF00534	Glycosyl transferases group 1, Glycosyltransferase Family 4; Glycosyltransferase Family 4, Glycosyl transferases group 1	IPR001296, IPR028098; IPR028098, IPR001296	Glycosyl transferase, family 1, Glycosyltransferase subfamily 4-like, N-terminal domain; Glycosyltransferase subfamily 4-like, N-terminal domain, Glycosyl transferase, family 1
hsd_id_Theobroma_cacao_1030	XP_007021667.1; XP_007025436.1; XP_007047657.1; XP_007041454.2; XP_017973149.1	339; 355; 358; 356; 425	Pfam	PF02866, PF00056; PF02866, PF00056; PF00056, PF02866; PF00056, PF02866; PF02866, PF00056	lactate/malate dehydrogenase, alpha/beta C-terminal domain, lactate/malate dehydrogenase, NAD binding domain; lactate/malate dehydrogenase, alpha/beta C-terminal domain, lactate/malate dehydrogenase, NAD binding domain; lactate/malate dehydrogenase, NAD binding domain, lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain, lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, alpha/beta C-terminal domain, lactate/malate dehydrogenase, NAD binding domain	IPR022383, IPR001236; IPR022383, IPR001236; IPR001236, IPR022383; IPR001236, IPR022383; IPR022383, IPR001236	Lactate/malate dehydrogenase, C-terminal, Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal, Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, N-terminal, Lactate/malate dehydrogenase, C-terminal; Lactate/malate dehydrogenase, N-terminal, Lactate/malate dehydrogenase, C-terminal; Lactate/malate dehydrogenase, C-terminal, Lactate/malate dehydrogenase, N-terminal
hsd_id_Theobroma_cacao_1031	XP_007021705.2; XP_017983027.1	350; 365	Pfam	PF01762; PF01762	Galactosyltransferase; Galactosyltransferase	IPR002659; IPR002659	Glycosyl transferase, family 31; Glycosyl transferase, family 31
hsd_id_Theobroma_cacao_1032	XP_007021723.1; XP_007025385.1	162; 170	Pfam	PF01190; PF01190	Pollen protein Ole e 1 like; Pollen protein Ole e 1 like	-; -	-; -
hsd_id_Theobroma_cacao_1033	XP_007021728.2; XP_017985474.1	972; 965	Pfam	PF00311; PF00311	Phosphoenolpyruvate carboxylase; Phosphoenolpyruvate carboxylase	IPR021135; IPR021135	Phosphoenolpyruvate carboxylase; Phosphoenolpyruvate carboxylase
hsd_id_Theobroma_cacao_1034	XP_007021740.2; XP_017980623.1; XP_017979532.1	616; 620; 618	Pfam	PF12222; PF12222; PF12222	Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A; Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A; Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A	IPR021102; IPR021102; IPR021102	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A; Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A; Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A
hsd_id_Theobroma_cacao_1035	XP_007021827.2; XP_007045652.2; XP_017970502.1	392; 390; 367	Pfam	PF06880; PF06880; PF06880	Protein of unknown function (DUF1262); Protein of unknown function (DUF1262); Protein of unknown function (DUF1262)	IPR010683; IPR010683; IPR010683	Protein of unknown function DUF1262; Protein of unknown function DUF1262; Protein of unknown function DUF1262
hsd_id_Theobroma_cacao_1036	XP_007021834.2; XP_007021853.2; XP_007021856.2; XP_017979781.1; XP_017979784.1; XP_007021836.2	379; 396; 370; 405; 399; 404	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1037	XP_007021850.2; XP_017978923.1	522; 542	Pfam	PF04366, PF01363; PF04366, PF01363	Las17-binding protein actin regulator, FYVE zinc finger; Las17-binding protein actin regulator, FYVE zinc finger	IPR007461, IPR000306; IPR007461, IPR000306	Ysc84 actin-binding domain, FYVE zinc finger; Ysc84 actin-binding domain, FYVE zinc finger
hsd_id_Theobroma_cacao_1038	XP_007021896.2; XP_017979228.1; XP_017972727.1; XP_007025398.1; XP_007048674.2; XP_007048792.2; XP_017969445.1; XP_007050065.2; XP_007025415.2; XP_017978193.1; XP_017981596.1; XP_017978437.1; XP_007037812.2; XP_017971883.1; XP_017972028.1; XP_007047371.2; XP_007043092.2	333; 336; 335; 338; 344; 343; 343; 342; 341; 343; 355; 340; 362; 340; 382; 384; 350	Pfam	PF08246, PF00112; PF08246, PF00112; PF08246, PF00112; PF08246, PF00112; PF00112, PF08246; PF00112, PF08246; PF00112, PF08246; PF08246, PF00112; PF08246, PF00112; PF08246, PF00112; PF08246, PF00112; PF00112, PF08246; PF00112, PF08246; PF00112, PF08246; PF00112, PF08246; PF00112, PF08246; PF08246, PF00112	Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease; Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease; Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease; Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease; Papain family cysteine protease, Cathepsin propeptide inhibitor domain (I29); Papain family cysteine protease, Cathepsin propeptide inhibitor domain (I29); Papain family cysteine protease, Cathepsin propeptide inhibitor domain (I29); Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease; Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease; Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease; Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease; Papain family cysteine protease, Cathepsin propeptide inhibitor domain (I29); Papain family cysteine protease, Cathepsin propeptide inhibitor domain (I29); Papain family cysteine protease, Cathepsin propeptide inhibitor domain (I29); Papain family cysteine protease, Cathepsin propeptide inhibitor domain (I29); Papain family cysteine protease, Cathepsin propeptide inhibitor domain (I29); Cathepsin propeptide inhibitor domain (I29), Papain family cysteine protease	IPR013201, IPR000668; IPR013201, IPR000668; IPR013201, IPR000668; IPR013201, IPR000668; IPR000668, IPR013201; IPR000668, IPR013201; IPR000668, IPR013201; IPR013201, IPR000668; IPR013201, IPR000668; IPR013201, IPR000668; IPR013201, IPR000668; IPR000668, IPR013201; IPR000668, IPR013201; IPR000668, IPR013201; IPR000668, IPR013201; IPR000668, IPR013201; IPR013201, IPR000668	Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal; Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal; Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal; Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal; Peptidase C1A, papain C-terminal, Cathepsin propeptide inhibitor domain (I29); Peptidase C1A, papain C-terminal, Cathepsin propeptide inhibitor domain (I29); Peptidase C1A, papain C-terminal, Cathepsin propeptide inhibitor domain (I29); Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal; Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal; Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal; Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal; Peptidase C1A, papain C-terminal, Cathepsin propeptide inhibitor domain (I29); Peptidase C1A, papain C-terminal, Cathepsin propeptide inhibitor domain (I29); Peptidase C1A, papain C-terminal, Cathepsin propeptide inhibitor domain (I29); Peptidase C1A, papain C-terminal, Cathepsin propeptide inhibitor domain (I29); Peptidase C1A, papain C-terminal, Cathepsin propeptide inhibitor domain (I29); Cathepsin propeptide inhibitor domain (I29), Peptidase C1A, papain C-terminal
hsd_id_Theobroma_cacao_1039	XP_007021907.2; XP_017979219.1	476; 513	Pfam	PF10559, PF00344; PF00344, PF10559	Plug domain of Sec61p, SecY translocase; SecY translocase, Plug domain of Sec61p	IPR019561, IPR002208; IPR002208, IPR019561	Translocon Sec61/SecY, plug domain, SecY/SEC61-alpha family; SecY/SEC61-alpha family, Translocon Sec61/SecY, plug domain
hsd_id_Theobroma_cacao_1040	XP_007021914.2; XP_007025303.2	114; 114	Pfam	PF16455; PF16455	Ubiquitin-binding domain; Ubiquitin-binding domain	IPR032752; IPR032752	DC-UbP/UBTD2, N-terminal domain; DC-UbP/UBTD2, N-terminal domain
hsd_id_Theobroma_cacao_1041	XP_007021975.1; XP_017970511.1; XP_007045698.2; XP_017970510.1; XP_007046174.2	252; 257; 257; 257; 254	Pfam	PF13639; PF13639; PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_1042	XP_007021999.2; XP_007048823.2	672; 657	Pfam	PF05699, PF14372, PF02892; PF14372, PF02892, PF05699	hAT family C-terminal dimerisation region, Domain of unknown function (DUF4413), BED zinc finger; Domain of unknown function (DUF4413), BED zinc finger, hAT family C-terminal dimerisation region	IPR008906, IPR025525, IPR003656; IPR025525, IPR003656, IPR008906	HAT, C-terminal dimerisation domain, hAT-like transposase, RNase-H fold, Zinc finger, BED-type; hAT-like transposase, RNase-H fold, Zinc finger, BED-type, HAT, C-terminal dimerisation domain
hsd_id_Theobroma_cacao_1043	XP_007022065.2; XP_017976883.1; XP_007040161.2	284; 284; 313	Pfam	PF03587; PF03587; PF03587	EMG1/NEP1 methyltransferase; EMG1/NEP1 methyltransferase; EMG1/NEP1 methyltransferase	IPR005304; IPR005304; IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1; Ribosomal biogenesis, methyltransferase, EMG1/NEP1; Ribosomal biogenesis, methyltransferase, EMG1/NEP1
hsd_id_Theobroma_cacao_1044	XP_007022092.2; XP_007025128.2	161; 158	Pfam	PF10502; PF10502	Signal peptidase, peptidase S26; Signal peptidase, peptidase S26	IPR019533; IPR019533	Peptidase S26; Peptidase S26
hsd_id_Theobroma_cacao_1045	XP_007022099.2; XP_017980356.1; XP_017980357.1; XP_017982530.1; XP_007035043.2; XP_017970082.1; XP_007043676.2	518; 518; 518; 516; 511; 510; 510	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_1046	XP_007022103.2; XP_017980359.1	511; 511	Pfam	PF00646, PF08387; PF08387, PF00646	F-box domain, FBD; FBD, F-box domain	IPR001810, IPR006566; IPR006566, IPR001810	F-box domain, FBD domain; FBD domain, F-box domain
hsd_id_Theobroma_cacao_1047	XP_007022108.2; XP_017983337.1	292; 313	Pfam	PF00753; PF00753	Metallo-beta-lactamase superfamily; Metallo-beta-lactamase superfamily	IPR001279; IPR001279	Metallo-beta-lactamase; Metallo-beta-lactamase
hsd_id_Theobroma_cacao_1048	XP_007022171.2; XP_007039189.2; XP_007039357.1	305; 392; 349	Pfam	PF00076, PF07145; PF07145, PF00076; PF07145, PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Ataxin-2 C-terminal region; Ataxin-2 C-terminal region, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); Ataxin-2 C-terminal region, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504, IPR009818; IPR009818, IPR000504; IPR009818, IPR000504	RNA recognition motif domain, Ataxin-2, C-terminal; Ataxin-2, C-terminal, RNA recognition motif domain; Ataxin-2, C-terminal, RNA recognition motif domain
hsd_id_Theobroma_cacao_1049	XP_007022180.2; XP_007025058.2; XP_017974351.1	613; 612; 606	Pfam	PF03055; PF03055; PF03055	Retinal pigment epithelial membrane protein; Retinal pigment epithelial membrane protein; Retinal pigment epithelial membrane protein	IPR004294; IPR004294; IPR004294	Carotenoid oxygenase; Carotenoid oxygenase; Carotenoid oxygenase
hsd_id_Theobroma_cacao_1050	XP_007022183.2; XP_007025051.2; XP_007024700.2; XP_007024701.2; XP_017978813.1	369; 367; 364; 364; 364	Pfam	PF01070; PF01070; PF01070; PF01070; PF01070	FMN-dependent dehydrogenase; FMN-dependent dehydrogenase; FMN-dependent dehydrogenase; FMN-dependent dehydrogenase; FMN-dependent dehydrogenase	IPR000262; IPR000262; IPR000262; IPR000262; IPR000262	FMN-dependent dehydrogenase; FMN-dependent dehydrogenase; FMN-dependent dehydrogenase; FMN-dependent dehydrogenase; FMN-dependent dehydrogenase
hsd_id_Theobroma_cacao_1051	XP_007022217.2; XP_007038863.2; XP_007038868.1; XP_017972635.1; XP_007040367.2; XP_017980100.1; XP_007038869.1; XP_007040370.2; XP_007040369.1	192; 190; 201; 185; 185; 196; 214; 215; 188	Pfam	PF03168; PF03168; PF03168; PF03168; PF03168; PF03168; PF03168; PF03168; PF03168	Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein	IPR004864; IPR004864; IPR004864; IPR004864; IPR004864; IPR004864; IPR004864; IPR004864; IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup
hsd_id_Theobroma_cacao_1052	XP_007022287.2; XP_007022291.2	222; 223	Pfam	PF12680; PF12680	SnoaL-like domain; SnoaL-like domain	IPR037401; IPR037401	SnoaL-like domain; SnoaL-like domain
hsd_id_Theobroma_cacao_1053	XP_007022342.2; XP_017972681.1; XP_007039030.2	268; 344; 287	Pfam	PF06203; PF06203; PF06203	CCT motif; CCT motif; CCT motif	IPR010402; IPR010402; IPR010402	CCT domain; CCT domain; CCT domain
hsd_id_Theobroma_cacao_1054	XP_007022384.1; XP_007032545.2; XP_007046090.2	405; 431; 473	Pfam	PF01490; PF01490; PF01490	Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein	IPR013057; IPR013057; IPR013057	Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain
hsd_id_Theobroma_cacao_1055	XP_007022389.2; XP_017977579.1; XP_007022560.1	275; 268; 211	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_1056	XP_007022392.2; XP_007022520.2; XP_007022514.2; XP_017971429.1; XP_007028571.2; XP_017980038.1; XP_017980040.1; XP_007028572.2; XP_017970173.1; XP_017970057.1; XP_017972048.1; XP_017980041.1; XP_017977931.1; XP_017976174.1; XP_007022506.2; XP_017980033.1; XP_017980035.1; XP_017977406.1; XP_007044880.1; XP_007050128.2	141; 134; 140; 157; 136; 121; 121; 134; 139; 141; 139; 116; 134; 150; 130; 132; 132; 167; 128; 128	Pfam	; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; 
hsd_id_Theobroma_cacao_1057	XP_007022524.2; XP_017979610.1	104; 103	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1058	XP_007022579.2; XP_017980600.1	401; 491	Pfam	PF00162; PF00162	Phosphoglycerate kinase; Phosphoglycerate kinase	IPR001576; IPR001576	Phosphoglycerate kinase; Phosphoglycerate kinase
hsd_id_Theobroma_cacao_1059	XP_007022604.2; XP_017971201.1; XP_007046576.2; XP_007049913.2; XP_007026620.1	477; 471; 472; 488; 489	Pfam	PF00909; PF00909; PF00909; PF00909; PF00909	Ammonium Transporter Family; Ammonium Transporter Family; Ammonium Transporter Family; Ammonium Transporter Family; Ammonium Transporter Family	IPR024041; IPR024041; IPR024041; IPR024041; IPR024041	Ammonium transporter AmtB-like domain; Ammonium transporter AmtB-like domain; Ammonium transporter AmtB-like domain; Ammonium transporter AmtB-like domain; Ammonium transporter AmtB-like domain
hsd_id_Theobroma_cacao_1060	XP_007022619.2; XP_007041060.2	297; 296	Pfam	PF13561; PF13561	Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase	-; -	-; -
hsd_id_Theobroma_cacao_1061	XP_007022664.2; XP_007031630.2; XP_007031629.2; XP_007031628.2; XP_017974160.1; XP_017970946.1; XP_017970948.1; XP_017970225.1; XP_017970049.1; XP_017980891.1	342; 382; 395; 383; 384; 408; 381; 385; 389; 392	Pfam	PF00657; PF00657; PF00657; PF00657; PF00657; PF00657; PF00657; PF00657; PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_1062	XP_007022688.1; XP_007037517.1	143; 143	Pfam	PF01090; PF01090	Ribosomal protein S19e; Ribosomal protein S19e	IPR001266; IPR001266	Ribosomal protein S19e; Ribosomal protein S19e
hsd_id_Theobroma_cacao_1063	XP_007022744.2; XP_017979459.1; XP_017978010.1	350; 362; 336	Pfam	PF03381; PF03381; PF03381	LEM3 (ligand-effect modulator 3) family / CDC50 family; LEM3 (ligand-effect modulator 3) family / CDC50 family; LEM3 (ligand-effect modulator 3) family / CDC50 family	IPR005045; IPR005045; IPR005045	CDC50/LEM3 family; CDC50/LEM3 family; CDC50/LEM3 family
hsd_id_Theobroma_cacao_1064	XP_007022766.2; XP_007048453.1; XP_017975585.1; XP_017973273.1; XP_017971198.1	388; 402; 485; 456; 467	Pfam	PF07002, PF13920; PF07002, PF13920; PF13920, PF07002; PF07002, PF13920; PF07002, PF13920	Copine, Zinc finger, C3HC4 type (RING finger); Copine, Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger), Copine; Copine, Zinc finger, C3HC4 type (RING finger); Copine, Zinc finger, C3HC4 type (RING finger)	IPR010734, -; IPR010734, -; -, IPR010734; IPR010734, -; IPR010734, -	Copine, C-terminal, -; Copine, C-terminal, -; -, Copine, C-terminal; Copine, C-terminal, -; Copine, C-terminal, -
hsd_id_Theobroma_cacao_1065	XP_007022789.2; XP_007040953.2; XP_007051061.2	603; 598; 561	Pfam	PF00117, PF06418; PF00117, PF06418; PF00117, PF06418	Glutamine amidotransferase class-I, CTP synthase N-terminus; Glutamine amidotransferase class-I, CTP synthase N-terminus; Glutamine amidotransferase class-I, CTP synthase N-terminus	IPR017926, IPR017456; IPR017926, IPR017456; IPR017926, IPR017456	Glutamine amidotransferase, CTP synthase, N-terminal; Glutamine amidotransferase, CTP synthase, N-terminal; Glutamine amidotransferase, CTP synthase, N-terminal
hsd_id_Theobroma_cacao_1066	XP_007022795.2; XP_017975565.1; XP_017974136.1	416; 414; 494	Pfam	PF00180; PF00180; PF00180	Isocitrate/isopropylmalate dehydrogenase; Isocitrate/isopropylmalate dehydrogenase; Isocitrate/isopropylmalate dehydrogenase	IPR024084; IPR024084; IPR024084	Isopropylmalate dehydrogenase-like domain; Isopropylmalate dehydrogenase-like domain; Isopropylmalate dehydrogenase-like domain
hsd_id_Theobroma_cacao_1067	XP_007022888.1; XP_017970612.1	322; 297	Pfam	PF05368; PF05368	NmrA-like family; NmrA-like family	IPR008030; IPR008030	NmrA-like domain; NmrA-like domain
hsd_id_Theobroma_cacao_1068	XP_007022903.2; XP_007023616.2	946; 893	Pfam	PF01055, PF13802, PF16863; PF16863, PF13802, PF01055	Glycosyl hydrolases family 31, Galactose mutarotase-like, N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase; N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase, Galactose mutarotase-like, Glycosyl hydrolases family 31	IPR000322, IPR025887, IPR031727; IPR031727, IPR025887, IPR000322	Glycoside hydrolase family 31, Glycoside hydrolase family 31, N-terminal domain, Galactose mutarotase, N-terminal barrel; Galactose mutarotase, N-terminal barrel, Glycoside hydrolase family 31, N-terminal domain, Glycoside hydrolase family 31
hsd_id_Theobroma_cacao_1069	XP_007022904.2; XP_017978051.1	237; 228	Pfam	PF04116; PF04116	Fatty acid hydroxylase superfamily; Fatty acid hydroxylase superfamily	IPR006694; IPR006694	Fatty acid hydroxylase; Fatty acid hydroxylase
hsd_id_Theobroma_cacao_1070	XP_007022927.2; XP_007035746.1	322; 315	Pfam	PF00182; PF00182	Chitinase class I; Chitinase class I	IPR000726; IPR000726	Glycoside hydrolase, family 19, catalytic; Glycoside hydrolase, family 19, catalytic
hsd_id_Theobroma_cacao_1071	XP_007022944.1; XP_017974609.1	87; 120	Pfam	PF07189; PF07189	Splicing factor 3B subunit 10 (SF3b10); Splicing factor 3B subunit 10 (SF3b10)	IPR009846; IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10; Splicing factor 3B subunit 5/RDS3 complex subunit 10
hsd_id_Theobroma_cacao_1072	XP_007022981.1; XP_017985456.1	412; 397	Pfam	PF16363; PF16363	GDP-mannose 4,6 dehydratase; GDP-mannose 4,6 dehydratase	IPR016040; IPR016040	NAD(P)-binding domain; NAD(P)-binding domain
hsd_id_Theobroma_cacao_1073	XP_007022993.2; XP_017972622.1; XP_017972623.1; XP_017974564.1; XP_007027174.2	385; 388; 389; 387; 394	Pfam	PF03478; PF03478; PF03478; PF03478; PF03478	Protein of unknown function (DUF295); Protein of unknown function (DUF295); Protein of unknown function (DUF295); Protein of unknown function (DUF295); Protein of unknown function (DUF295)	IPR005174; IPR005174; IPR005174; IPR005174; IPR005174	Domain unknown function DUF295; Domain unknown function DUF295; Domain unknown function DUF295; Domain unknown function DUF295; Domain unknown function DUF295
hsd_id_Theobroma_cacao_1074	XP_007023077.2; XP_007023078.2	217; 218	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_1075	XP_007023094.2; XP_007042518.2	643; 600	Pfam	PF00389, PF01842, PF02826; PF00389, PF02826, PF01842	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, ACT domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, ACT domain	IPR006139, IPR002912, IPR006140; IPR006139, IPR006140, IPR002912	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, ACT domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain, ACT domain
hsd_id_Theobroma_cacao_1076	XP_007023098.1; XP_007036945.2; XP_017970467.1	363; 322; 318	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1077	XP_007023166.2; XP_017973066.1	169; 192	Pfam	PF06232; PF06232	Embryo-specific protein 3, (ATS3); Embryo-specific protein 3, (ATS3)	IPR010417; IPR010417	Embryo-specific ATS3; Embryo-specific ATS3
hsd_id_Theobroma_cacao_1078	XP_007023185.1; XP_017983347.1	331; 331	Pfam	PF01429; PF01429	Methyl-CpG binding domain; Methyl-CpG binding domain	IPR001739; IPR001739	Methyl-CpG DNA binding; Methyl-CpG DNA binding
hsd_id_Theobroma_cacao_1079	XP_007023198.2; XP_017979504.1	386; 385	Pfam	PF00487; PF00487	Fatty acid desaturase; Fatty acid desaturase	IPR005804; IPR005804	Fatty acid desaturase domain; Fatty acid desaturase domain
hsd_id_Theobroma_cacao_1080	XP_007023212.2; XP_007030564.1	199; 207	Pfam	PF00187, PF00967; PF00967, PF00187	Chitin recognition protein, Barwin family; Barwin family, Chitin recognition protein	IPR001002, IPR001153; IPR001153, IPR001002	Chitin-binding, type 1, Barwin domain; Barwin domain, Chitin-binding, type 1
hsd_id_Theobroma_cacao_1081	XP_007023247.2; XP_017982680.1	673; 632	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1082	XP_007023264.2; XP_007028924.1	309; 253	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1083	XP_007023289.1; XP_017970588.1; XP_017977130.1	172; 183; 112	Pfam	PF02298; PF02298; PF02298	Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain	IPR003245; IPR003245; IPR003245	Phytocyanin domain; Phytocyanin domain; Phytocyanin domain
hsd_id_Theobroma_cacao_1084	XP_007023293.1; XP_007041535.2; XP_007041532.2; XP_007023313.2; XP_017981591.1; XP_007041533.1	123; 124; 135; 135; 127; 135	Pfam	PF02298; PF02298; PF02298; PF02298; PF02298; PF02298	Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain	IPR003245; IPR003245; IPR003245; IPR003245; IPR003245; IPR003245	Phytocyanin domain; Phytocyanin domain; Phytocyanin domain; Phytocyanin domain; Phytocyanin domain; Phytocyanin domain
hsd_id_Theobroma_cacao_1085	XP_007023311.2; XP_007040780.1	466; 401	Pfam	PF07683, PF02492; PF02492, PF07683	Cobalamin synthesis protein cobW C-terminal domain, CobW/HypB/UreG, nucleotide-binding domain; CobW/HypB/UreG, nucleotide-binding domain, Cobalamin synthesis protein cobW C-terminal domain	IPR011629, IPR003495; IPR003495, IPR011629	Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal, CobW/HypB/UreG, nucleotide-binding domain; CobW/HypB/UreG, nucleotide-binding domain, Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
hsd_id_Theobroma_cacao_1086	XP_007023320.2; XP_017983262.1; XP_017977024.1; XP_007031064.2; XP_007035676.2; XP_017982137.1; XP_017983146.1	1142; 1146; 1136; 1132; 1139; 1052; 1145	Pfam	PF00400; PF00400; PF00400; PF00400; PF00400; PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat; WD domain, G-beta repeat; WD domain, G-beta repeat; WD domain, G-beta repeat; WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680; IPR001680; IPR001680; IPR001680; IPR001680; IPR001680	WD40 repeat; WD40 repeat; WD40 repeat; WD40 repeat; WD40 repeat; WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_1087	XP_007023327.1; XP_017981902.1	194; 248	Pfam	PF07647; PF07647	SAM domain (Sterile alpha motif); SAM domain (Sterile alpha motif)	IPR001660; IPR001660	Sterile alpha motif domain; Sterile alpha motif domain
hsd_id_Theobroma_cacao_1088	XP_007023343.2; XP_017978246.1; XP_017978245.1; XP_017979879.1	553; 583; 560; 553	Pfam	PF03140; PF03140; PF03140; PF03140	Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function	IPR004158; IPR004158; IPR004158; IPR004158	Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant
hsd_id_Theobroma_cacao_1089	XP_007023383.1; XP_017971997.1	348; 350	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_1090	XP_007023450.2; XP_017978124.1	170; 170	Pfam	PF02298; PF02298	Plastocyanin-like domain; Plastocyanin-like domain	IPR003245; IPR003245	Phytocyanin domain; Phytocyanin domain
hsd_id_Theobroma_cacao_1091	XP_007023475.1; XP_017982106.1; XP_017982803.1; XP_017983865.1; XP_007027321.2; XP_017983862.1; XP_007033663.2; XP_017976375.1	431; 432; 447; 449; 437; 453; 433; 338	Pfam	PF02458; PF02458; PF02458; PF02458; PF02458; PF02458; PF02458; PF02458	Transferase family; Transferase family; Transferase family; Transferase family; Transferase family; Transferase family; Transferase family; Transferase family	IPR003480; IPR003480; IPR003480; IPR003480; IPR003480; IPR003480; IPR003480; IPR003480	Transferase; Transferase; Transferase; Transferase; Transferase; Transferase; Transferase; Transferase
hsd_id_Theobroma_cacao_1092	XP_007023568.2; XP_017979144.1	463; 458	Pfam	PF02458; PF02458	Transferase family; Transferase family	IPR003480; IPR003480	Transferase; Transferase
hsd_id_Theobroma_cacao_1093	XP_007023638.1; XP_007023712.2; XP_017978528.1	108; 111; 113	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_1094	XP_007023716.2; XP_007048069.1	272; 322	Pfam	PF12906; PF12906	RING-variant domain; RING-variant domain	IPR011016; IPR011016	Zinc finger, RING-CH-type; Zinc finger, RING-CH-type
hsd_id_Theobroma_cacao_1095	XP_007023719.1; XP_007023721.2	485; 485	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1096	XP_007023727.2; XP_017971729.1; XP_007034494.2	412; 396; 436	Pfam	PF02485; PF02485; PF02485	Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme	IPR003406; IPR003406; IPR003406	Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14
hsd_id_Theobroma_cacao_1097	XP_007023876.2; XP_017977240.1; XP_017971745.1	448; 454; 458	Pfam	PF00295; PF00295; PF00295	Glycosyl hydrolases family 28; Glycosyl hydrolases family 28; Glycosyl hydrolases family 28	IPR000743; IPR000743; IPR000743	Glycoside hydrolase, family 28; Glycoside hydrolase, family 28; Glycoside hydrolase, family 28
hsd_id_Theobroma_cacao_1098	XP_007023893.2; XP_017985283.1; XP_017978152.1; XP_017978901.1; XP_017978239.1; XP_017978190.1; XP_017978160.1; XP_017978284.1	903; 896; 901; 903; 969; 928; 928; 910	Pfam	PF13855, PF00931; PF13855, PF00931; PF13855, PF00931; PF13855, PF00931; PF00931, PF13855; PF13855, PF00931; PF13855, PF00931; PF00931, PF13855	Leucine rich repeat, NB-ARC domain; Leucine rich repeat, NB-ARC domain; Leucine rich repeat, NB-ARC domain; Leucine rich repeat, NB-ARC domain; NB-ARC domain, Leucine rich repeat; Leucine rich repeat, NB-ARC domain; Leucine rich repeat, NB-ARC domain; NB-ARC domain, Leucine rich repeat	IPR001611, IPR002182; IPR001611, IPR002182; IPR001611, IPR002182; IPR001611, IPR002182; IPR002182, IPR001611; IPR001611, IPR002182; IPR001611, IPR002182; IPR002182, IPR001611	Leucine-rich repeat, NB-ARC; Leucine-rich repeat, NB-ARC; Leucine-rich repeat, NB-ARC; Leucine-rich repeat, NB-ARC; NB-ARC, Leucine-rich repeat; Leucine-rich repeat, NB-ARC; Leucine-rich repeat, NB-ARC; NB-ARC, Leucine-rich repeat
hsd_id_Theobroma_cacao_1099	XP_007023943.2; XP_007031773.1	321; 305	Pfam	PF02167; PF02167	Cytochrome C1 family; Cytochrome C1 family	IPR002326; IPR002326	Cytochrome c1; Cytochrome c1
hsd_id_Theobroma_cacao_1100	XP_007024016.1; XP_017978537.1; XP_017978294.1; XP_017978542.1; XP_017978540.1; XP_017978495.1; XP_017978310.1	319; 318; 319; 313; 312; 313; 312	Pfam	PF03171, PF14226; PF03171, PF14226; PF14226, PF03171; PF03171, PF14226; PF03171, PF14226; PF14226, PF03171; PF03171, PF14226	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR044861, IPR026992; IPR044861, IPR026992; IPR026992, IPR044861; IPR044861, IPR026992; IPR044861, IPR026992; IPR026992, IPR044861; IPR044861, IPR026992	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_1101	XP_007024051.2; XP_007024052.2	357; 356	Pfam	PF13964, PF01344; PF01344, PF13964	Kelch motif, Kelch motif; Kelch motif, Kelch motif	-, IPR006652; IPR006652, -	-, Kelch repeat type 1; Kelch repeat type 1, -
hsd_id_Theobroma_cacao_1102	XP_007024065.2; XP_017977069.1; XP_007013233.2	739; 691; 753	Pfam	PF01412; PF01412; PF01412	Putative GTPase activating protein for Arf; Putative GTPase activating protein for Arf; Putative GTPase activating protein for Arf	IPR001164; IPR001164; IPR001164	Arf GTPase activating protein; Arf GTPase activating protein; Arf GTPase activating protein
hsd_id_Theobroma_cacao_1103	XP_007024104.2; XP_007013223.2	397; 349	Pfam	PF13837; PF13837	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR044822; IPR044822	Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4
hsd_id_Theobroma_cacao_1104	XP_007024120.2; XP_017979340.1	552; 552	Pfam	PF01458; PF01458	SUF system FeS cluster assembly, SufBD; SUF system FeS cluster assembly, SufBD	IPR000825; IPR000825	SUF system FeS cluster assembly, SufBD; SUF system FeS cluster assembly, SufBD
hsd_id_Theobroma_cacao_1105	XP_007024143.2; XP_007024392.2; XP_017979312.1; XP_017978033.1	1005; 954; 982; 971	Pfam	PF18052, PF00931; PF18052, PF00931; PF00931, PF18052; PF00931, PF18052	Rx N-terminal domain, NB-ARC domain; Rx N-terminal domain, NB-ARC domain; NB-ARC domain, Rx N-terminal domain; NB-ARC domain, Rx N-terminal domain	IPR041118, IPR002182; IPR041118, IPR002182; IPR002182, IPR041118; IPR002182, IPR041118	Rx, N-terminal, NB-ARC; Rx, N-terminal, NB-ARC; NB-ARC, Rx, N-terminal; NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_1106	XP_007024170.2; XP_017983646.1	566; 587	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1107	XP_007024174.2; XP_017983474.1; XP_017969805.1; XP_007027567.2; XP_017982256.1	486; 473; 476; 457; 543	Pfam	PF01925; PF01925; PF01925; PF01925; PF01925	Sulfite exporter TauE/SafE; Sulfite exporter TauE/SafE; Sulfite exporter TauE/SafE; Sulfite exporter TauE/SafE; Sulfite exporter TauE/SafE	IPR002781; IPR002781; IPR002781; IPR002781; IPR002781	Transmembrane protein TauE-like; Transmembrane protein TauE-like; Transmembrane protein TauE-like; Transmembrane protein TauE-like; Transmembrane protein TauE-like
hsd_id_Theobroma_cacao_1108	XP_007024183.2; XP_007024184.2; XP_007051987.2; XP_007051988.1; XP_017980563.1; XP_007040064.2; XP_017972385.1	314; 313; 332; 333; 339; 337; 338	Pfam	PF00389, PF02826; PF02826, PF00389; PF02826, PF00389; PF00389, PF02826; PF00389, PF02826; PF00389, PF02826; PF00389, PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	IPR006139, IPR006140; IPR006140, IPR006139; IPR006140, IPR006139; IPR006139, IPR006140; IPR006139, IPR006140; IPR006139, IPR006140; IPR006139, IPR006140	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
hsd_id_Theobroma_cacao_1109	XP_007024204.1; XP_017985348.1; XP_007024206.1	154; 162; 155	Pfam	PF03061; PF03061; PF03061	Thioesterase superfamily; Thioesterase superfamily; Thioesterase superfamily	IPR006683; IPR006683; IPR006683	Thioesterase domain; Thioesterase domain; Thioesterase domain
hsd_id_Theobroma_cacao_1110	XP_007024266.2; XP_017979508.1; XP_017979630.1; XP_007011909.2; XP_017983891.1; XP_007011908.1; XP_007021019.1	188; 195; 119; 177; 176; 177; 215	Pfam	PF02298; PF02298; PF02298; PF02298; PF02298; PF02298; PF02298	Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain	IPR003245; IPR003245; IPR003245; IPR003245; IPR003245; IPR003245; IPR003245	Phytocyanin domain; Phytocyanin domain; Phytocyanin domain; Phytocyanin domain; Phytocyanin domain; Phytocyanin domain; Phytocyanin domain
hsd_id_Theobroma_cacao_1111	XP_007024306.2; XP_017983543.1	151; 146	Pfam	PF01627; PF01627	Hpt domain; Hpt domain	IPR008207; IPR008207	Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain
hsd_id_Theobroma_cacao_1112	XP_007024354.2; XP_017978169.1; XP_017979328.1	915; 912; 914	Pfam	PF13855, PF07714, PF12819; PF12819, PF13855, PF07714; PF07714, PF12819, PF13855	Leucine rich repeat, Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Leucine rich repeat, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain, Leucine rich repeat	IPR001611, IPR001245, IPR024788; IPR024788, IPR001611, IPR001245; IPR001245, IPR024788, IPR001611	Leucine-rich repeat, Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Leucine-rich repeat, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain, Leucine-rich repeat
hsd_id_Theobroma_cacao_1113	XP_007024361.2; XP_007045580.2; XP_017982098.1; XP_007039455.2	304; 316; 316; 306	Pfam	PF05153; PF05153; PF05153; PF05153	Myo-inositol oxygenase; Myo-inositol oxygenase; Myo-inositol oxygenase; Myo-inositol oxygenase	IPR007828; IPR007828; IPR007828; IPR007828	Inositol oxygenase; Inositol oxygenase; Inositol oxygenase; Inositol oxygenase
hsd_id_Theobroma_cacao_1114	XP_007024383.2; XP_017983805.1; XP_007042169.2; XP_017969485.1; XP_007014949.2; XP_017969747.1; XP_007018426.2	474; 469; 440; 470; 434; 431; 435	Pfam	PF00010; PF00010; PF00010; PF00010; PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_1115	XP_007024460.2; XP_017969428.1; XP_017983415.1; XP_007030543.1; XP_007034966.2	186; 181; 164; 188; 183	Pfam	PF03208; PF03208; PF03208; PF03208; PF03208	PRA1 family protein; PRA1 family protein; PRA1 family protein; PRA1 family protein; PRA1 family protein	IPR004895; IPR004895; IPR004895; IPR004895; IPR004895	Prenylated rab acceptor PRA1; Prenylated rab acceptor PRA1; Prenylated rab acceptor PRA1; Prenylated rab acceptor PRA1; Prenylated rab acceptor PRA1
hsd_id_Theobroma_cacao_1116	XP_007024474.2; XP_017984531.1	242; 242	Pfam	PF01657; PF01657	Salt stress response/antifungal; Salt stress response/antifungal	IPR002902; IPR002902	Gnk2-homologous domain; Gnk2-homologous domain
hsd_id_Theobroma_cacao_1117	XP_007024477.2; XP_017982492.1	364; 294	Pfam	PF03446, PF14833; PF03446, PF14833	NAD binding domain of 6-phosphogluconate dehydrogenase, NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; NAD binding domain of 6-phosphogluconate dehydrogenase, NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase	IPR006115, IPR029154; IPR006115, IPR029154	6-phosphogluconate dehydrogenase, NADP-binding, 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain; 6-phosphogluconate dehydrogenase, NADP-binding, 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain
hsd_id_Theobroma_cacao_1118	XP_007024486.1; XP_017983829.1	376; 373	Pfam	PF00956; PF00956	Nucleosome assembly protein (NAP); Nucleosome assembly protein (NAP)	IPR002164; IPR002164	Nucleosome assembly protein (NAP); Nucleosome assembly protein (NAP)
hsd_id_Theobroma_cacao_1119	XP_007024513.2; XP_007040106.1; XP_017976729.1; XP_017972935.1; XP_007029314.2; XP_017977179.1	591; 574; 553; 579; 560; 581	Pfam	PF05199, PF00732; PF00732, PF05199; PF00732, PF05199; PF00732, PF05199; PF00732, PF05199; PF05199, PF00732	GMC oxidoreductase, GMC oxidoreductase; GMC oxidoreductase, GMC oxidoreductase; GMC oxidoreductase, GMC oxidoreductase; GMC oxidoreductase, GMC oxidoreductase; GMC oxidoreductase, GMC oxidoreductase; GMC oxidoreductase, GMC oxidoreductase	IPR007867, IPR000172; IPR000172, IPR007867; IPR000172, IPR007867; IPR000172, IPR007867; IPR000172, IPR007867; IPR007867, IPR000172	Glucose-methanol-choline oxidoreductase, C-terminal, Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, N-terminal, Glucose-methanol-choline oxidoreductase, C-terminal; Glucose-methanol-choline oxidoreductase, N-terminal, Glucose-methanol-choline oxidoreductase, C-terminal; Glucose-methanol-choline oxidoreductase, N-terminal, Glucose-methanol-choline oxidoreductase, C-terminal; Glucose-methanol-choline oxidoreductase, N-terminal, Glucose-methanol-choline oxidoreductase, C-terminal; Glucose-methanol-choline oxidoreductase, C-terminal, Glucose-methanol-choline oxidoreductase, N-terminal
hsd_id_Theobroma_cacao_1120	XP_007024515.2; XP_017978905.1	813; 836	Pfam	PF05879; PF05879	Root hair defective 3 GTP-binding protein (RHD3); Root hair defective 3 GTP-binding protein (RHD3)	IPR008803; IPR008803	RHD3/Sey1; RHD3/Sey1
hsd_id_Theobroma_cacao_1121	XP_007024539.1; XP_017982075.1	275; 262	Pfam	PF00249, PF00538; PF00249, PF00538	Myb-like DNA-binding domain, linker histone H1 and H5 family; Myb-like DNA-binding domain, linker histone H1 and H5 family	IPR017930, IPR005818; IPR017930, IPR005818	Myb domain, Linker histone H1/H5, domain H15; Myb domain, Linker histone H1/H5, domain H15
hsd_id_Theobroma_cacao_1122	XP_007024585.2; XP_007048866.2; XP_007049403.2	852; 877; 885	Pfam	PF06972; PF06972; PF06972	Protein of unknown function (DUF1296); Protein of unknown function (DUF1296); Protein of unknown function (DUF1296)	IPR009719; IPR009719; IPR009719	GBF-interacting protein 1, N-terminal; GBF-interacting protein 1, N-terminal; GBF-interacting protein 1, N-terminal
hsd_id_Theobroma_cacao_1123	XP_007024594.2; XP_017983945.1	305; 372	Pfam	PF00795; PF00795	Carbon-nitrogen hydrolase; Carbon-nitrogen hydrolase	IPR003010; IPR003010	Carbon-nitrogen hydrolase; Carbon-nitrogen hydrolase
hsd_id_Theobroma_cacao_1124	XP_007024595.2; XP_007048125.2	399; 368	Pfam	PF01926, PF16897, PF02824; PF02824, PF16897, PF01926	50S ribosome-binding GTPase, C-terminal region of MMR_HSR1 domain, TGS domain; TGS domain, C-terminal region of MMR_HSR1 domain, 50S ribosome-binding GTPase	IPR006073, IPR031662, IPR004095; IPR004095, IPR031662, IPR006073	GTP binding domain, GTP binding protein, second domain, TGS; TGS, GTP binding protein, second domain, GTP binding domain
hsd_id_Theobroma_cacao_1125	XP_007024659.2; XP_017975836.1	669; 643	Pfam	PF03893, PF01764; PF03893, PF01764	Lipase 3 N-terminal region, Lipase (class 3); Lipase 3 N-terminal region, Lipase (class 3)	IPR005592, IPR002921; IPR005592, IPR002921	Mono-/di-acylglycerol lipase, N-terminal, Fungal lipase-like domain; Mono-/di-acylglycerol lipase, N-terminal, Fungal lipase-like domain
hsd_id_Theobroma_cacao_1126	XP_007024687.2; XP_007024692.2	686; 686	Pfam	PF13968, PF04578; PF13968, PF04578	Domain of unknown function (DUF4220), Protein of unknown function, DUF594; Domain of unknown function (DUF4220), Protein of unknown function, DUF594	IPR025315, IPR007658; IPR025315, IPR007658	Domain of unknown function DUF4220, Protein of unknown function DUF594; Domain of unknown function DUF4220, Protein of unknown function DUF594
hsd_id_Theobroma_cacao_1127	XP_007024711.2; XP_007033594.2	461; 433	Pfam	PF13532; PF13532	2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily	IPR027450; IPR027450	Alpha-ketoglutarate-dependent dioxygenase AlkB-like; Alpha-ketoglutarate-dependent dioxygenase AlkB-like
hsd_id_Theobroma_cacao_1128	XP_007024713.2; XP_007044621.2	524; 598	Pfam	PF06075; PF06075	Plant protein of unknown function (DUF936); Plant protein of unknown function (DUF936)	IPR010341; IPR010341	Protein of unknown function DUF936, plant; Protein of unknown function DUF936, plant
hsd_id_Theobroma_cacao_1129	XP_007024721.2; XP_007025374.1	396; 301	Pfam	PF13837; PF13837	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR044822; IPR044822	Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4
hsd_id_Theobroma_cacao_1130	XP_007024760.2; XP_007040184.1; XP_007040185.2	204; 210; 195	Pfam	PF04525; PF04525; PF04525	LURP-one-related; LURP-one-related; LURP-one-related	IPR007612; IPR007612; IPR007612	LURP-one-related; LURP-one-related; LURP-one-related
hsd_id_Theobroma_cacao_1131	XP_007024769.2; XP_017982580.1	586; 593	Pfam	PF04043, PF01095; PF04043, PF01095	Plant invertase/pectin methylesterase inhibitor, Pectinesterase; Plant invertase/pectin methylesterase inhibitor, Pectinesterase	IPR006501, IPR000070; IPR006501, IPR000070	Pectinesterase inhibitor domain, Pectinesterase, catalytic; Pectinesterase inhibitor domain, Pectinesterase, catalytic
hsd_id_Theobroma_cacao_1132	XP_007024802.2; XP_017982454.1; XP_007029575.2	543; 542; 575	Pfam	PF13193, PF00501; PF00501, PF13193; PF00501, PF13193	AMP-binding enzyme C-terminal domain, AMP-binding enzyme; AMP-binding enzyme, AMP-binding enzyme C-terminal domain; AMP-binding enzyme, AMP-binding enzyme C-terminal domain	IPR025110, IPR000873; IPR000873, IPR025110; IPR000873, IPR025110	AMP-binding enzyme, C-terminal domain, AMP-dependent synthetase/ligase; AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain; AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain
hsd_id_Theobroma_cacao_1133	XP_007024804.2; XP_017978858.1; XP_017971125.1	684; 636; 659	Pfam	PF03468, PF03470; PF03468, PF03470; PF03470, PF03468	XS domain, XS zinc finger domain; XS domain, XS zinc finger domain; XS zinc finger domain, XS domain	IPR005380, IPR005381; IPR005380, IPR005381; IPR005381, IPR005380	XS domain, Zinc finger-XS domain; XS domain, Zinc finger-XS domain; Zinc finger-XS domain, XS domain
hsd_id_Theobroma_cacao_1134	XP_007024820.2; XP_017974894.1	413; 410	Pfam	PF03348; PF03348	Serine incorporator (Serinc); Serine incorporator (Serinc)	IPR005016; IPR005016	Serine incorporator/TMS membrane protein; Serine incorporator/TMS membrane protein
hsd_id_Theobroma_cacao_1135	XP_007024824.1; XP_017970369.1	105; 190	Pfam	PF00935; PF00935	Ribosomal protein L44; Ribosomal protein L44	IPR000552; IPR000552	Ribosomal protein L44e; Ribosomal protein L44e
hsd_id_Theobroma_cacao_1136	XP_007024839.2; XP_017979587.1; XP_017983909.1; XP_007032064.1; XP_017971493.1; XP_017984724.1; XP_007031417.2; XP_007040386.1; XP_007041056.2	745; 739; 762; 785; 778; 793; 791; 776; 795	Pfam	PF02705; PF02705; PF02705; PF02705; PF02705; PF02705; PF02705; PF02705; PF02705	K+ potassium transporter; K+ potassium transporter; K+ potassium transporter; K+ potassium transporter; K+ potassium transporter; K+ potassium transporter; K+ potassium transporter; K+ potassium transporter; K+ potassium transporter	IPR003855; IPR003855; IPR003855; IPR003855; IPR003855; IPR003855; IPR003855; IPR003855; IPR003855	Potassium transporter; Potassium transporter; Potassium transporter; Potassium transporter; Potassium transporter; Potassium transporter; Potassium transporter; Potassium transporter; Potassium transporter
hsd_id_Theobroma_cacao_1137	XP_007024848.2; XP_017981751.1	597; 543	Pfam	PF00134; PF00134	Cyclin, N-terminal domain; Cyclin, N-terminal domain	IPR006671; IPR006671	Cyclin, N-terminal; Cyclin, N-terminal
hsd_id_Theobroma_cacao_1138	XP_007024904.1; XP_007024905.2; XP_017974632.1; XP_007035821.2; XP_007047124.2	358; 360; 360; 368; 398	Pfam	PF00657; PF00657; PF00657; PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087; IPR001087; IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_1139	XP_007024911.2; XP_017978434.1	175; 171	Pfam	PF14299; PF14299	Phloem protein 2; Phloem protein 2	IPR025886; IPR025886	Phloem protein 2-like; Phloem protein 2-like
hsd_id_Theobroma_cacao_1140	XP_007024938.2; XP_017985402.1	355; 325	Pfam	PF13410, PF13409; PF13409, PF13410	Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain	-, IPR004045; IPR004045, -	-, Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal, -
hsd_id_Theobroma_cacao_1141	XP_007024942.2; XP_017971918.1; XP_007038432.2	333; 363; 338	Pfam	PF04674; PF04674; PF04674	Phosphate-induced protein 1 conserved region; Phosphate-induced protein 1 conserved region; Phosphate-induced protein 1 conserved region	IPR006766; IPR006766; IPR006766	Protein EXORDIUM-like; Protein EXORDIUM-like; Protein EXORDIUM-like
hsd_id_Theobroma_cacao_1142	XP_007024951.1; XP_007024952.2	511; 522	Pfam	PF01764; PF01764	Lipase (class 3); Lipase (class 3)	IPR002921; IPR002921	Fungal lipase-like domain; Fungal lipase-like domain
hsd_id_Theobroma_cacao_1143	XP_007025026.2; XP_017978441.1; XP_017979175.1; XP_017985141.1; XP_007026522.2; XP_007034049.2	578; 576; 576; 592; 497; 497	Pfam	PF00083; PF00083; PF00083; PF00083; PF00083; PF00083	Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter	IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828	Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like
hsd_id_Theobroma_cacao_1144	XP_007025030.2; XP_007037593.1; XP_017980250.1; XP_017974553.1; XP_007046319.2; XP_007050039.1; XP_007032774.2	468; 369; 441; 396; 486; 346; 366	Pfam	PF03634; PF03634; PF03634; PF03634; PF03634; PF03634; PF03634	TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor	IPR017887; IPR017887; IPR017887; IPR017887; IPR017887; IPR017887; IPR017887	Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup
hsd_id_Theobroma_cacao_1145	XP_007025079.2; XP_017980388.1; XP_017969697.1; XP_007035887.2	334; 330; 338; 333	Pfam	PF14226, PF03171; PF03171, PF14226; PF03171, PF14226; PF03171, PF14226	non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR026992, IPR044861; IPR044861, IPR026992; IPR044861, IPR026992; IPR044861, IPR026992	Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_1146	XP_007025085.1; XP_007031193.1; XP_007025086.2; XP_007035874.2; XP_007039397.1; XP_007025394.2; XP_017972640.1	146; 166; 154; 167; 156; 136; 137	Pfam	PF04398; PF04398; PF04398; PF04398; PF04398; PF04398; PF04398	Protein of unknown function, DUF538; Protein of unknown function, DUF538; Protein of unknown function, DUF538; Protein of unknown function, DUF538; Protein of unknown function, DUF538; Protein of unknown function, DUF538; Protein of unknown function, DUF538	IPR007493; IPR007493; IPR007493; IPR007493; IPR007493; IPR007493; IPR007493	Protein of unknown function DUF538; Protein of unknown function DUF538; Protein of unknown function DUF538; Protein of unknown function DUF538; Protein of unknown function DUF538; Protein of unknown function DUF538; Protein of unknown function DUF538
hsd_id_Theobroma_cacao_1147	XP_007025106.2; XP_007048988.1	267; 254	Pfam	PF03188; PF03188	Eukaryotic cytochrome b561; Eukaryotic cytochrome b561	IPR006593; IPR006593	Cytochrome b561/ferric reductase transmembrane; Cytochrome b561/ferric reductase transmembrane
hsd_id_Theobroma_cacao_1148	XP_007025135.2; XP_017978056.1; XP_017978058.1; XP_017980412.1	245; 169; 126; 114	Pfam	PF07983; PF07983; PF07983; PF07983	X8 domain; X8 domain; X8 domain; X8 domain	IPR012946; IPR012946; IPR012946; IPR012946	X8 domain; X8 domain; X8 domain; X8 domain
hsd_id_Theobroma_cacao_1149	XP_007025153.1; XP_017979473.1; XP_017978201.1; XP_017978332.1; XP_007052417.2; XP_017980371.1	382; 368; 381; 333; 366; 402	Pfam	PF16913; PF16913; PF16913; PF16913; PF16913; PF16913	Purine nucleobase transmembrane transport; Purine nucleobase transmembrane transport; Purine nucleobase transmembrane transport; Purine nucleobase transmembrane transport; Purine nucleobase transmembrane transport; Purine nucleobase transmembrane transport	-; -; -; -; -; -	-; -; -; -; -; -
hsd_id_Theobroma_cacao_1150	XP_007025172.1; XP_007040859.2; XP_017979306.1	177; 177; 184	Pfam	PF01217; PF01217; PF01217	Clathrin adaptor complex small chain; Clathrin adaptor complex small chain; Clathrin adaptor complex small chain	IPR022775; IPR022775; IPR022775	AP complex, mu/sigma subunit; AP complex, mu/sigma subunit; AP complex, mu/sigma subunit
hsd_id_Theobroma_cacao_1151	XP_007025176.2; XP_007049403.2	873; 885	Pfam	PF06972; PF06972	Protein of unknown function (DUF1296); Protein of unknown function (DUF1296)	IPR009719; IPR009719	GBF-interacting protein 1, N-terminal; GBF-interacting protein 1, N-terminal
hsd_id_Theobroma_cacao_1152	XP_007025181.2; XP_007048862.2; XP_007034399.1; XP_017975229.1; XP_007041110.2; XP_007026312.1; XP_007049064.2; XP_017972732.1; XP_007050033.2; XP_007049293.1; XP_007045884.2	292; 234; 323; 200; 177; 136; 304; 199; 172; 117; 190	Pfam	PF07983; PF07983; PF07983; PF07983; PF07983; PF07983; PF07983; PF07983; PF07983; PF07983; PF07983	X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain	IPR012946; IPR012946; IPR012946; IPR012946; IPR012946; IPR012946; IPR012946; IPR012946; IPR012946; IPR012946; IPR012946	X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain; X8 domain
hsd_id_Theobroma_cacao_1153	XP_007025190.2; XP_007048850.2	854; 840	Pfam	PF04059, PF00076; PF00076, PF04059	RNA recognition motif 2, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), RNA recognition motif 2	IPR007201, IPR000504; IPR000504, IPR007201	Mei2-like, C-terminal RNA recognition motif, RNA recognition motif domain; RNA recognition motif domain, Mei2-like, C-terminal RNA recognition motif
hsd_id_Theobroma_cacao_1154	XP_007025196.1; XP_007049630.1; XP_017972633.1; XP_017975309.1	133; 133; 179; 133	Pfam	PF01655; PF01655; PF01655; PF01655	Ribosomal protein L32; Ribosomal protein L32; Ribosomal protein L32; Ribosomal protein L32	IPR001515; IPR001515; IPR001515; IPR001515	Ribosomal protein L32e; Ribosomal protein L32e; Ribosomal protein L32e; Ribosomal protein L32e
hsd_id_Theobroma_cacao_1155	XP_007025202.2; XP_007034565.2	156; 170	Pfam	PF05512; PF05512	AWPM-19-like family; AWPM-19-like family	IPR008390; IPR008390	AWPM-19-like; AWPM-19-like
hsd_id_Theobroma_cacao_1156	XP_007025227.2; XP_007035234.1	233; 206	Pfam	PF01652; PF01652	Eukaryotic initiation factor 4E; Eukaryotic initiation factor 4E	IPR001040; IPR001040	Translation Initiation factor eIF- 4e; Translation Initiation factor eIF- 4e
hsd_id_Theobroma_cacao_1157	XP_007025233.2; XP_017980400.1	233; 235	Pfam	PF03083; PF03083	Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange	IPR004316; IPR004316	SWEET sugar transporter; SWEET sugar transporter
hsd_id_Theobroma_cacao_1158	XP_007025244.2; XP_017980326.1	934; 948	Pfam	PF02358, PF00982; PF02358, PF00982	Trehalose-phosphatase, Glycosyltransferase family 20; Trehalose-phosphatase, Glycosyltransferase family 20	IPR003337, IPR001830; IPR003337, IPR001830	Trehalose-phosphatase, Glycosyl transferase, family 20; Trehalose-phosphatase, Glycosyl transferase, family 20
hsd_id_Theobroma_cacao_1159	XP_007025257.2; XP_007048815.1	456; 459	Pfam	PF12796, PF07714; PF12796, PF07714	Ankyrin repeats (3 copies), Protein tyrosine and serine/threonine kinase; Ankyrin repeats (3 copies), Protein tyrosine and serine/threonine kinase	IPR020683, IPR001245; IPR020683, IPR001245	Ankyrin repeat-containing domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Ankyrin repeat-containing domain, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1160	XP_007025263.1; XP_017975347.1	571; 587	Pfam	PF01823; PF01823	MAC/Perforin domain; MAC/Perforin domain	IPR020864; IPR020864	Membrane attack complex component/perforin (MACPF) domain; Membrane attack complex component/perforin (MACPF) domain
hsd_id_Theobroma_cacao_1161	XP_007025282.2; XP_017978337.1; XP_017978151.1	236; 311; 319	Pfam	PF03031; PF03031; PF03031	NLI interacting factor-like phosphatase; NLI interacting factor-like phosphatase; NLI interacting factor-like phosphatase	IPR004274; IPR004274; IPR004274	FCP1 homology domain; FCP1 homology domain; FCP1 homology domain
hsd_id_Theobroma_cacao_1162	XP_007025289.1; XP_017980661.1	327; 325	Pfam	PF05687; PF05687	BES1/BZR1 plant transcription factor, N-terminal; BES1/BZR1 plant transcription factor, N-terminal	IPR008540; IPR008540	BES1/BZR1 plant transcription factor, N-terminal; BES1/BZR1 plant transcription factor, N-terminal
hsd_id_Theobroma_cacao_1163	XP_007025304.1; XP_007034348.2; XP_007049748.1; XP_017977864.1	215; 215; 215; 215	Pfam	PF00810; PF00810; PF00810; PF00810	ER lumen protein retaining receptor; ER lumen protein retaining receptor; ER lumen protein retaining receptor; ER lumen protein retaining receptor	IPR000133; IPR000133; IPR000133; IPR000133	ER lumen protein retaining receptor; ER lumen protein retaining receptor; ER lumen protein retaining receptor; ER lumen protein retaining receptor
hsd_id_Theobroma_cacao_1164	XP_007025308.1; XP_007040644.2; XP_007045542.2; XP_007044571.2; XP_017973680.1; XP_017982676.1	857; 862; 862; 861; 862; 838	Pfam	PF00982, PF02358; PF02358, PF00982; PF00982, PF02358; PF02358, PF00982; PF00982, PF02358; PF00982, PF02358	Glycosyltransferase family 20, Trehalose-phosphatase; Trehalose-phosphatase, Glycosyltransferase family 20; Glycosyltransferase family 20, Trehalose-phosphatase; Trehalose-phosphatase, Glycosyltransferase family 20; Glycosyltransferase family 20, Trehalose-phosphatase; Glycosyltransferase family 20, Trehalose-phosphatase	IPR001830, IPR003337; IPR003337, IPR001830; IPR001830, IPR003337; IPR003337, IPR001830; IPR001830, IPR003337; IPR001830, IPR003337	Glycosyl transferase, family 20, Trehalose-phosphatase; Trehalose-phosphatase, Glycosyl transferase, family 20; Glycosyl transferase, family 20, Trehalose-phosphatase; Trehalose-phosphatase, Glycosyl transferase, family 20; Glycosyl transferase, family 20, Trehalose-phosphatase; Glycosyl transferase, family 20, Trehalose-phosphatase
hsd_id_Theobroma_cacao_1165	XP_007025324.1; XP_007044083.2	239; 268	Pfam	PF07939; PF07939	Protein of unknown function (DUF1685); Protein of unknown function (DUF1685)	IPR012881; IPR012881	Protein of unknown function DUF1685; Protein of unknown function DUF1685
hsd_id_Theobroma_cacao_1166	XP_007025342.2; XP_007048725.1; XP_007031505.2; XP_007031229.2; XP_007051227.1; XP_007041204.2; XP_017981217.1	368; 409; 412; 407; 409; 422; 470	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1167	XP_007025383.2; XP_017978460.1	170; 180	Pfam	PF05641; PF05641	Agenet domain; Agenet domain	IPR008395; IPR008395	Agenet-like domain; Agenet-like domain
hsd_id_Theobroma_cacao_1168	XP_007025402.1; XP_017970705.1	268; 262	Pfam	PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_1169	XP_007025427.2; XP_017978106.1; XP_007025431.2; XP_017982535.1; XP_007025432.2; XP_017978199.1	382; 381; 383; 383; 406; 417	Pfam	PF01764; PF01764; PF01764; PF01764; PF01764; PF01764	Lipase (class 3); Lipase (class 3); Lipase (class 3); Lipase (class 3); Lipase (class 3); Lipase (class 3)	IPR002921; IPR002921; IPR002921; IPR002921; IPR002921; IPR002921	Fungal lipase-like domain; Fungal lipase-like domain; Fungal lipase-like domain; Fungal lipase-like domain; Fungal lipase-like domain; Fungal lipase-like domain
hsd_id_Theobroma_cacao_1170	XP_007025455.2; XP_007025457.1; XP_017977328.1	255; 286; 270	Pfam	PF00293; PF00293; PF00293	NUDIX domain; NUDIX domain; NUDIX domain	IPR000086; IPR000086; IPR000086	NUDIX hydrolase domain; NUDIX hydrolase domain; NUDIX hydrolase domain
hsd_id_Theobroma_cacao_1171	XP_007025459.2; XP_017980252.1	312; 283	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1172	XP_007025463.2; XP_017977298.1	237; 240	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_1173	XP_007025499.2; XP_017980018.1	167; 158	Pfam	PF10252; PF10252	Casein kinase substrate phosphoprotein PP28; Casein kinase substrate phosphoprotein PP28	IPR019380; IPR019380	Casein kinase substrate, phosphoprotein PP28; Casein kinase substrate, phosphoprotein PP28
hsd_id_Theobroma_cacao_1174	XP_007025512.1; XP_017971207.1	169; 169	Pfam	PF07047; PF07047	Optic atrophy 3 protein (OPA3); Optic atrophy 3 protein (OPA3)	IPR010754; IPR010754	Optic atrophy 3-like; Optic atrophy 3-like
hsd_id_Theobroma_cacao_1175	XP_007025514.2; XP_017978482.1; XP_007043718.2	352; 354; 364	Pfam	PF00891, PF08100; PF08100, PF00891; PF08100, PF00891	O-methyltransferase domain, Dimerisation domain; Dimerisation domain, O-methyltransferase domain; Dimerisation domain, O-methyltransferase domain	IPR001077, IPR012967; IPR012967, IPR001077; IPR012967, IPR001077	O-methyltransferase domain, Plant methyltransferase dimerisation; Plant methyltransferase dimerisation, O-methyltransferase domain; Plant methyltransferase dimerisation, O-methyltransferase domain
hsd_id_Theobroma_cacao_1176	XP_007025525.2; XP_017971530.1; XP_007043882.1; XP_007031936.1; XP_007035504.1; XP_007035505.1; XP_017978494.1; XP_007050806.1; XP_007050807.1; XP_007050809.1	148; 145; 124; 125; 102; 102; 134; 100; 102; 102	Pfam	PF00462; PF00462; PF00462; PF00462; PF00462; PF00462; PF00462; PF00462; PF00462; PF00462	Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin	IPR002109; IPR002109; IPR002109; IPR002109; IPR002109; IPR002109; IPR002109; IPR002109; IPR002109; IPR002109	Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin
hsd_id_Theobroma_cacao_1177	XP_007025538.2; XP_007043697.2; XP_007041237.2	211; 240; 221	Pfam	PF05078; PF05078; PF05078	Protein of unknown function (DUF679); Protein of unknown function (DUF679); Protein of unknown function (DUF679)	IPR007770; IPR007770; IPR007770	Protein DMP; Protein DMP; Protein DMP
hsd_id_Theobroma_cacao_1178	XP_007025539.2; XP_007045891.2	408; 429	Pfam	PF03151; PF03151	Triose-phosphate Transporter family; Triose-phosphate Transporter family	IPR004853; IPR004853	Sugar phosphate transporter domain; Sugar phosphate transporter domain
hsd_id_Theobroma_cacao_1179	XP_007025543.2; XP_017971056.1	1740; 1784	Pfam	PF05066, PF15613, PF02791, PF15612, PF00046; PF05066, PF15613, PF02791, PF00046, PF15612	HB1, ASXL, restriction endonuclease HTH domain, Williams-Beuren syndrome DDT (WSD), D-TOX E motif, DDT domain, WSTF, HB1, Itc1p, MBD9 motif 1, Homeodomain; HB1, ASXL, restriction endonuclease HTH domain, Williams-Beuren syndrome DDT (WSD), D-TOX E motif, DDT domain, Homeodomain, WSTF, HB1, Itc1p, MBD9 motif 1	IPR007759, IPR028941, IPR018501, IPR028942, IPR001356; IPR007759, IPR028941, IPR018501, IPR001356, IPR028942	ASXL, HARE-HTH domain, WHIM2 domain, DDT domain, WHIM1 domain, Homeobox domain; ASXL, HARE-HTH domain, WHIM2 domain, DDT domain, Homeobox domain, WHIM1 domain
hsd_id_Theobroma_cacao_1180	XP_007025556.2; XP_007041214.2; XP_017969493.1; XP_017970930.1; XP_007041212.2	606; 603; 590; 578; 574	Pfam	PF01823; PF01823; PF01823; PF01823; PF01823	MAC/Perforin domain; MAC/Perforin domain; MAC/Perforin domain; MAC/Perforin domain; MAC/Perforin domain	IPR020864; IPR020864; IPR020864; IPR020864; IPR020864	Membrane attack complex component/perforin (MACPF) domain; Membrane attack complex component/perforin (MACPF) domain; Membrane attack complex component/perforin (MACPF) domain; Membrane attack complex component/perforin (MACPF) domain; Membrane attack complex component/perforin (MACPF) domain
hsd_id_Theobroma_cacao_1181	XP_007025571.2; XP_007043637.2	442; 491	Pfam	PF13923; PF13923	Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger)	-; -	-; -
hsd_id_Theobroma_cacao_1182	XP_007025603.1; XP_007043610.1	308; 289	Pfam	PF04720; PF04720	PDDEXK-like family of unknown function; PDDEXK-like family of unknown function	IPR006502; IPR006502	Protein of unknown function PDDEXK-like; Protein of unknown function PDDEXK-like
hsd_id_Theobroma_cacao_1183	XP_007025604.2; XP_007025605.2	699; 673	Pfam	PF00069, PF00139; PF00139, PF00069	Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain	IPR000719, IPR001220; IPR001220, IPR000719	Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain
hsd_id_Theobroma_cacao_1184	XP_007025606.2; XP_017980714.1	586; 589	Pfam	PF04765; PF04765	Protein of unknown function (DUF616); Protein of unknown function (DUF616)	IPR006852; IPR006852	Protein of unknown function DUF616; Protein of unknown function DUF616
hsd_id_Theobroma_cacao_1185	XP_007025627.2; XP_017971344.1; XP_017974639.1	1780; 1771; 1779	Pfam	PF14288, PF02364; PF02364, PF14288; PF14288, PF02364	1,3-beta-glucan synthase subunit FKS1, domain-1, 1,3-beta-glucan synthase component; 1,3-beta-glucan synthase component, 1,3-beta-glucan synthase subunit FKS1, domain-1; 1,3-beta-glucan synthase subunit FKS1, domain-1, 1,3-beta-glucan synthase component	IPR026899, IPR003440; IPR003440, IPR026899; IPR026899, IPR003440	1,3-beta-glucan synthase subunit FKS1-like, domain-1, Glycosyl transferase, family 48; Glycosyl transferase, family 48, 1,3-beta-glucan synthase subunit FKS1-like, domain-1; 1,3-beta-glucan synthase subunit FKS1-like, domain-1, Glycosyl transferase, family 48
hsd_id_Theobroma_cacao_1186	XP_007025630.2; XP_007043593.1	163; 163	Pfam	PF04535; PF04535	Domain of unknown function (DUF588); Domain of unknown function (DUF588)	IPR006702; IPR006702	Casparian strip membrane protein domain; Casparian strip membrane protein domain
hsd_id_Theobroma_cacao_1187	XP_007025633.2; XP_007039533.1	134; 145	Pfam	PF06943; PF06943	LSD1 zinc finger; LSD1 zinc finger	IPR005735; IPR005735	Zinc finger, LSD1-type; Zinc finger, LSD1-type
hsd_id_Theobroma_cacao_1188	XP_007025661.1; XP_007043566.2	213; 206	Pfam	PF00335; PF00335	Tetraspanin family; Tetraspanin family	IPR018499; IPR018499	Tetraspanin/Peripherin; Tetraspanin/Peripherin
hsd_id_Theobroma_cacao_1189	XP_007025689.2; XP_007025690.2; XP_017970191.1; XP_007043558.2	313; 311; 312; 315	Pfam	PF00561; PF00561; PF00561; PF00561	alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR000073; IPR000073; IPR000073; IPR000073	Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1
hsd_id_Theobroma_cacao_1190	XP_007025693.1; XP_017977794.1; XP_007026758.2; XP_007026760.2	438; 421; 447; 437	Pfam	PF04488, PF04572; PF04572, PF04488; PF04488, PF04572; PF04572, PF04488	Glycosyltransferase sugar-binding region containing DXD motif, Alpha 1,4-glycosyltransferase conserved region; Alpha 1,4-glycosyltransferase conserved region, Glycosyltransferase sugar-binding region containing DXD motif; Glycosyltransferase sugar-binding region containing DXD motif, Alpha 1,4-glycosyltransferase conserved region; Alpha 1,4-glycosyltransferase conserved region, Glycosyltransferase sugar-binding region containing DXD motif	IPR007577, IPR007652; IPR007652, IPR007577; IPR007577, IPR007652; IPR007652, IPR007577	Glycosyltransferase, DXD sugar-binding motif, Alpha 1,4-glycosyltransferase domain; Alpha 1,4-glycosyltransferase domain, Glycosyltransferase, DXD sugar-binding motif; Glycosyltransferase, DXD sugar-binding motif, Alpha 1,4-glycosyltransferase domain; Alpha 1,4-glycosyltransferase domain, Glycosyltransferase, DXD sugar-binding motif
hsd_id_Theobroma_cacao_1191	XP_007025701.2; XP_017978714.1; XP_017978713.1; XP_017978715.1; XP_007025704.2	602; 600; 605; 596; 558	Pfam	PF12143, PF12142, PF00264; PF12142, PF12143, PF00264; PF12143, PF00264, PF12142; PF12142, PF00264, PF12143; PF00264, PF12142, PF12143	Protein of unknown function (DUF_B2219), Polyphenol oxidase middle domain, Common central domain of tyrosinase; Polyphenol oxidase middle domain, Protein of unknown function (DUF_B2219), Common central domain of tyrosinase; Protein of unknown function (DUF_B2219), Common central domain of tyrosinase, Polyphenol oxidase middle domain; Polyphenol oxidase middle domain, Common central domain of tyrosinase, Protein of unknown function (DUF_B2219); Common central domain of tyrosinase, Polyphenol oxidase middle domain, Protein of unknown function (DUF_B2219)	IPR022740, IPR022739, IPR002227; IPR022739, IPR022740, IPR002227; IPR022740, IPR002227, IPR022739; IPR022739, IPR002227, IPR022740; IPR002227, IPR022739, IPR022740	Polyphenol oxidase, C-terminal, Polyphenol oxidase, central domain, Tyrosinase copper-binding domain; Polyphenol oxidase, central domain, Polyphenol oxidase, C-terminal, Tyrosinase copper-binding domain; Polyphenol oxidase, C-terminal, Tyrosinase copper-binding domain, Polyphenol oxidase, central domain; Polyphenol oxidase, central domain, Tyrosinase copper-binding domain, Polyphenol oxidase, C-terminal; Tyrosinase copper-binding domain, Polyphenol oxidase, central domain, Polyphenol oxidase, C-terminal
hsd_id_Theobroma_cacao_1192	XP_007025711.2; XP_017971275.1; XP_017979043.1; XP_007043164.1; XP_007036954.2; XP_017984901.1	409; 424; 411; 395; 412; 441	Pfam	PF16499, PF17801; PF16499, PF17801; PF16499, PF17801; PF16499, PF17801; PF17801, PF16499; PF17801, PF16499	Alpha galactosidase A, Alpha galactosidase C-terminal beta sandwich domain; Alpha galactosidase A, Alpha galactosidase C-terminal beta sandwich domain; Alpha galactosidase A, Alpha galactosidase C-terminal beta sandwich domain; Alpha galactosidase A, Alpha galactosidase C-terminal beta sandwich domain; Alpha galactosidase C-terminal beta sandwich domain, Alpha galactosidase A; Alpha galactosidase C-terminal beta sandwich domain, Alpha galactosidase A	IPR002241, IPR041233; IPR002241, IPR041233; IPR002241, IPR041233; IPR002241, IPR041233; IPR041233, IPR002241; IPR041233, IPR002241	Glycoside hydrolase, family 27, Alpha galactosidase, C-terminal beta sandwich domain; Glycoside hydrolase, family 27, Alpha galactosidase, C-terminal beta sandwich domain; Glycoside hydrolase, family 27, Alpha galactosidase, C-terminal beta sandwich domain; Glycoside hydrolase, family 27, Alpha galactosidase, C-terminal beta sandwich domain; Alpha galactosidase, C-terminal beta sandwich domain, Glycoside hydrolase, family 27; Alpha galactosidase, C-terminal beta sandwich domain, Glycoside hydrolase, family 27
hsd_id_Theobroma_cacao_1193	XP_007025716.2; XP_017978704.1	840; 810	Pfam	PF01397, PF03936; PF03936, PF01397	Terpene synthase, N-terminal domain, Terpene synthase family, metal binding domain; Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain	IPR001906, IPR005630; IPR005630, IPR001906	Terpene synthase, N-terminal domain, Terpene synthase, metal-binding domain; Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain
hsd_id_Theobroma_cacao_1194	XP_007025720.2; XP_017978745.1	315; 315	Pfam	PF12146; PF12146	Serine aminopeptidase, S33; Serine aminopeptidase, S33	IPR022742; IPR022742	Serine aminopeptidase, S33; Serine aminopeptidase, S33
hsd_id_Theobroma_cacao_1195	XP_007025725.2; XP_017970580.1	374; 369	Pfam	PF01344; PF01344	Kelch motif; Kelch motif	IPR006652; IPR006652	Kelch repeat type 1; Kelch repeat type 1
hsd_id_Theobroma_cacao_1196	XP_007025745.2; XP_007043515.1; XP_017978347.1; XP_007040767.1; XP_017978750.1	317; 303; 288; 265; 278	Pfam	PF04144; PF04144; PF04144; PF04144; PF04144	SCAMP family; SCAMP family; SCAMP family; SCAMP family; SCAMP family	IPR007273; IPR007273; IPR007273; IPR007273; IPR007273	SCAMP; SCAMP; SCAMP; SCAMP; SCAMP
hsd_id_Theobroma_cacao_1197	XP_007025753.2; XP_017983194.1	545; 492	Pfam	PF07992; PF07992	Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase	IPR023753; IPR023753	FAD/NAD(P)-binding domain; FAD/NAD(P)-binding domain
hsd_id_Theobroma_cacao_1198	XP_007025754.2; XP_007044296.2; XP_007025756.1	304; 287; 304	Pfam	PF02265; PF02265; PF02265	S1/P1 Nuclease; S1/P1 Nuclease; S1/P1 Nuclease	IPR003154; IPR003154; IPR003154	S1/P1 nuclease; S1/P1 nuclease; S1/P1 nuclease
hsd_id_Theobroma_cacao_1199	XP_007025774.2; XP_007028001.2	302; 330	Pfam	PF00804, PF05739; PF00804, PF05739	Syntaxin, SNARE domain; Syntaxin, SNARE domain	IPR006011, IPR000727; IPR006011, IPR000727	Syntaxin, N-terminal domain, Target SNARE coiled-coil homology domain; Syntaxin, N-terminal domain, Target SNARE coiled-coil homology domain
hsd_id_Theobroma_cacao_1200	XP_007025801.2; XP_007043487.2; XP_017970650.1	598; 580; 609	Pfam	PF07992; PF07992; PF07992	Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase	IPR023753; IPR023753; IPR023753	FAD/NAD(P)-binding domain; FAD/NAD(P)-binding domain; FAD/NAD(P)-binding domain
hsd_id_Theobroma_cacao_1201	XP_007025839.2; XP_017971210.1	420; 415	Pfam	PF01733; PF01733	Nucleoside transporter; Nucleoside transporter	IPR002259; IPR002259	Equilibrative nucleoside transporter; Equilibrative nucleoside transporter
hsd_id_Theobroma_cacao_1202	XP_007025845.2; XP_017970200.1	327; 288	Pfam	PF02984, PF00134; PF00134, PF02984	Cyclin, C-terminal domain, Cyclin, N-terminal domain; Cyclin, N-terminal domain, Cyclin, C-terminal domain	IPR004367, IPR006671; IPR006671, IPR004367	Cyclin, C-terminal domain, Cyclin, N-terminal; Cyclin, N-terminal, Cyclin, C-terminal domain
hsd_id_Theobroma_cacao_1203	XP_007025856.2; XP_007043419.2; XP_017980543.1	248; 305; 222	Pfam	PF00582; PF00582; PF00582	Universal stress protein family; Universal stress protein family; Universal stress protein family	IPR006016; IPR006016; IPR006016	UspA; UspA; UspA
hsd_id_Theobroma_cacao_1204	XP_007025894.2; XP_017978085.1	383; 374	Pfam	PF01535, PF13041; PF13041, PF01535	PPR repeat, PPR repeat family; PPR repeat family, PPR repeat	IPR002885, IPR002885; IPR002885, IPR002885	Pentatricopeptide repeat, Pentatricopeptide repeat; Pentatricopeptide repeat, Pentatricopeptide repeat
hsd_id_Theobroma_cacao_1205	XP_007025901.2; XP_017969971.1	537; 541	Pfam	PF03000, PF00651; PF03000, PF00651	NPH3 family, BTB/POZ domain; NPH3 family, BTB/POZ domain	IPR027356, IPR000210; IPR027356, IPR000210	NPH3 domain, BTB/POZ domain; NPH3 domain, BTB/POZ domain
hsd_id_Theobroma_cacao_1206	XP_007025946.2; XP_017978358.1	1334; 1324	Pfam	PF07714, PF01657, PF00069; PF07714, PF01657, PF00069	Protein tyrosine and serine/threonine kinase, Salt stress response/antifungal, Protein kinase domain; Protein tyrosine and serine/threonine kinase, Salt stress response/antifungal, Protein kinase domain	IPR001245, IPR002902, IPR000719; IPR001245, IPR002902, IPR000719	Serine-threonine/tyrosine-protein kinase, catalytic domain, Gnk2-homologous domain, Protein kinase domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Gnk2-homologous domain, Protein kinase domain
hsd_id_Theobroma_cacao_1207	XP_007025980.1; XP_017979963.1; XP_007045566.1; XP_017979965.1; XP_017979964.1	346; 338; 357; 329; 329	Pfam	PF14226, PF03171; PF14226, PF03171; PF03171, PF14226; PF03171, PF14226; PF03171, PF14226	non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR026992, IPR044861; IPR026992, IPR044861; IPR044861, IPR026992; IPR044861, IPR026992; IPR044861, IPR026992	Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_1208	XP_007025986.2; XP_017985216.1	268; 264	Pfam	PF00240; PF00240	Ubiquitin family; Ubiquitin family	IPR000626; IPR000626	Ubiquitin-like domain; Ubiquitin-like domain
hsd_id_Theobroma_cacao_1209	XP_007025993.2; XP_007027510.2; XP_017977125.1; XP_017977544.1; XP_017976274.1; XP_007027513.2; XP_017976317.1; XP_017976030.1; XP_017977543.1	493; 493; 492; 490; 490; 490; 495; 493; 501	Pfam	PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_1210	XP_007025997.1; XP_007043966.1	125; 122	Pfam	PF02136; PF02136	Nuclear transport factor 2 (NTF2) domain; Nuclear transport factor 2 (NTF2) domain	IPR002075; IPR002075	Nuclear transport factor 2; Nuclear transport factor 2
hsd_id_Theobroma_cacao_1211	XP_007026037.1; XP_007042956.2; XP_017971356.1	291; 291; 289	Pfam	PF06454; PF06454; PF06454	Protein of unknown function (DUF1084); Protein of unknown function (DUF1084); Protein of unknown function (DUF1084)	IPR009457; IPR009457; IPR009457	THH1/TOM1/TOM3 domain; THH1/TOM1/TOM3 domain; THH1/TOM1/TOM3 domain
hsd_id_Theobroma_cacao_1212	XP_007026051.2; XP_017979068.1	431; 431	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1213	XP_007026053.2; XP_017978455.1	110; 110	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1214	XP_007026065.2; XP_017979514.1; XP_007025240.2	217; 209; 143	Pfam	PF04520; PF04520; PF04520	Senescence regulator; Senescence regulator; Senescence regulator	IPR007608; IPR007608; IPR007608	Senescence regulator S40; Senescence regulator S40; Senescence regulator S40
hsd_id_Theobroma_cacao_1215	XP_007026066.2; XP_007037189.1	548; 550	Pfam	PF00069, PF13499; PF13499, PF00069	Protein kinase domain, EF-hand domain pair; EF-hand domain pair, Protein kinase domain	IPR000719, IPR002048; IPR002048, IPR000719	Protein kinase domain, EF-hand domain; EF-hand domain, Protein kinase domain
hsd_id_Theobroma_cacao_1216	XP_007026071.1; XP_007027286.1	329; 332	Pfam	PF00141; PF00141	Peroxidase; Peroxidase	IPR002016; IPR002016	Haem peroxidase; Haem peroxidase
hsd_id_Theobroma_cacao_1217	XP_007026092.2; XP_017972025.1; XP_007039874.1; XP_017969533.1; XP_007051247.1	123; 124; 122; 117; 127	Pfam	PF02991; PF02991; PF02991; PF02991; PF02991	Autophagy protein Atg8 ubiquitin like; Autophagy protein Atg8 ubiquitin like; Autophagy protein Atg8 ubiquitin like; Autophagy protein Atg8 ubiquitin like; Autophagy protein Atg8 ubiquitin like	IPR004241; IPR004241; IPR004241; IPR004241; IPR004241	Autophagy protein Atg8 ubiquitin-like; Autophagy protein Atg8 ubiquitin-like; Autophagy protein Atg8 ubiquitin-like; Autophagy protein Atg8 ubiquitin-like; Autophagy protein Atg8 ubiquitin-like
hsd_id_Theobroma_cacao_1218	XP_007026099.2; XP_017980578.1	663; 578	Pfam	PF03140; PF03140	Plant protein of unknown function; Plant protein of unknown function	IPR004158; IPR004158	Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant
hsd_id_Theobroma_cacao_1219	XP_007026106.1; XP_007045239.2; XP_017975934.1; XP_017982805.1; XP_017976821.1	523; 498; 498; 496; 615	Pfam	PF07983, PF00332; PF00332, PF07983; PF07983, PF00332; PF07983, PF00332; PF00332, PF07983	X8 domain, Glycosyl hydrolases family 17; Glycosyl hydrolases family 17, X8 domain; X8 domain, Glycosyl hydrolases family 17; X8 domain, Glycosyl hydrolases family 17; Glycosyl hydrolases family 17, X8 domain	IPR012946, IPR000490; IPR000490, IPR012946; IPR012946, IPR000490; IPR012946, IPR000490; IPR000490, IPR012946	X8 domain, Glycoside hydrolase family 17; Glycoside hydrolase family 17, X8 domain; X8 domain, Glycoside hydrolase family 17; X8 domain, Glycoside hydrolase family 17; Glycoside hydrolase family 17, X8 domain
hsd_id_Theobroma_cacao_1220	XP_007026112.2; XP_007045387.2	305; 313	Pfam	PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930	Myb domain; Myb domain
hsd_id_Theobroma_cacao_1221	XP_007026123.2; XP_017978493.1; XP_007026125.2; XP_007026128.2; XP_017980659.1	425; 424; 425; 421; 415	Pfam	PF14476; PF14476; PF14476; PF14476; PF14476	Petal formation-expressed; Petal formation-expressed; Petal formation-expressed; Petal formation-expressed; Petal formation-expressed	IPR027949; IPR027949; IPR027949; IPR027949; IPR027949	Petal formation-expressed; Petal formation-expressed; Petal formation-expressed; Petal formation-expressed; Petal formation-expressed
hsd_id_Theobroma_cacao_1222	XP_007026126.2; XP_007035192.1	186; 185	Pfam	PF04117; PF04117	Mpv17 / PMP22 family; Mpv17 / PMP22 family	IPR007248; IPR007248	Mpv17/PMP22; Mpv17/PMP22
hsd_id_Theobroma_cacao_1223	XP_007026138.1; XP_007026139.2; XP_007026141.2; XP_017978368.1; XP_007026144.1	152; 156; 156; 131; 157	Pfam	PF04885; PF04885; PF04885; PF04885; PF04885	Stigma-specific protein, Stig1; Stigma-specific protein, Stig1; Stigma-specific protein, Stig1; Stigma-specific protein, Stig1; Stigma-specific protein, Stig1	IPR006969; IPR006969; IPR006969; IPR006969; IPR006969	Stigma-specific protein Stig1; Stigma-specific protein Stig1; Stigma-specific protein Stig1; Stigma-specific protein Stig1; Stigma-specific protein Stig1
hsd_id_Theobroma_cacao_1224	XP_007026143.2; XP_017978367.1	412; 406	Pfam	PF00646; PF00646	F-box domain; F-box domain	IPR001810; IPR001810	F-box domain; F-box domain
hsd_id_Theobroma_cacao_1225	XP_007026147.2; XP_017979560.1	266; 245	Pfam	PF01168; PF01168	Alanine racemase, N-terminal domain; Alanine racemase, N-terminal domain	IPR001608; IPR001608	Alanine racemase, N-terminal; Alanine racemase, N-terminal
hsd_id_Theobroma_cacao_1226	XP_007026159.2; XP_017976373.1	202; 229	Pfam	PF02365; PF02365	No apical meristem (NAM) protein; No apical meristem (NAM) protein	IPR003441; IPR003441	NAC domain; NAC domain
hsd_id_Theobroma_cacao_1227	XP_007026175.2; XP_017978409.1	639; 626	Pfam	PF10250; PF10250	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase	IPR019378; IPR019378	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase
hsd_id_Theobroma_cacao_1228	XP_007026179.1; XP_017969599.1; XP_017970865.1	224; 216; 222	Pfam	PF01426, PF00628; PF01426, PF00628; PF01426, PF00628	BAH domain, PHD-finger; BAH domain, PHD-finger; BAH domain, PHD-finger	IPR001025, IPR019787; IPR001025, IPR019787; IPR001025, IPR019787	Bromo adjacent homology (BAH) domain, Zinc finger, PHD-finger; Bromo adjacent homology (BAH) domain, Zinc finger, PHD-finger; Bromo adjacent homology (BAH) domain, Zinc finger, PHD-finger
hsd_id_Theobroma_cacao_1229	XP_007026197.2; XP_007049157.2	567; 566	Pfam	PF00365; PF00365	Phosphofructokinase; Phosphofructokinase	IPR000023; IPR000023	Phosphofructokinase domain; Phosphofructokinase domain
hsd_id_Theobroma_cacao_1230	XP_007026201.2; XP_017978188.1; XP_017978170.1	692; 728; 685	Pfam	PF13962, PF12796; PF13962, PF12796; PF12796, PF13962	Domain of unknown function, Ankyrin repeats (3 copies); Domain of unknown function, Ankyrin repeats (3 copies); Ankyrin repeats (3 copies), Domain of unknown function	IPR026961, IPR020683; IPR026961, IPR020683; IPR020683, IPR026961	PGG domain, Ankyrin repeat-containing domain; PGG domain, Ankyrin repeat-containing domain; Ankyrin repeat-containing domain, PGG domain
hsd_id_Theobroma_cacao_1231	XP_007026209.2; XP_017969639.1; XP_017976837.1	203; 220; 201	Pfam	PF03162; PF03162; PF03162	Tyrosine phosphatase family; Tyrosine phosphatase family; Tyrosine phosphatase family	IPR004861; IPR004861; IPR004861	Atypical dual-specificity phosphatase Siw14-like; Atypical dual-specificity phosphatase Siw14-like; Atypical dual-specificity phosphatase Siw14-like
hsd_id_Theobroma_cacao_1232	XP_007026231.1; XP_017978474.1	257; 257	Pfam	PF13561; PF13561	Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase	-; -	-; -
hsd_id_Theobroma_cacao_1233	XP_007026239.1; XP_017979652.1; XP_017974827.1	110; 201; 108	Pfam	PF03650; PF03650; PF03650	Mitochondrial pyruvate carriers; Mitochondrial pyruvate carriers; Mitochondrial pyruvate carriers	IPR005336; IPR005336; IPR005336	Mitochondrial pyruvate carrier; Mitochondrial pyruvate carrier; Mitochondrial pyruvate carrier
hsd_id_Theobroma_cacao_1234	XP_007026255.2; XP_007043603.1	448; 451	Pfam	PF00150; PF00150	Cellulase (glycosyl hydrolase family 5); Cellulase (glycosyl hydrolase family 5)	IPR001547; IPR001547	Glycoside hydrolase, family 5; Glycoside hydrolase, family 5
hsd_id_Theobroma_cacao_1235	XP_007026299.1; XP_007049278.1; XP_017980064.1	299; 297; 298	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1236	XP_007026320.2; XP_017971760.1	550; 563	Pfam	PF00249, PF00569; PF00249, PF00569	Myb-like DNA-binding domain, Zinc finger, ZZ type; Myb-like DNA-binding domain, Zinc finger, ZZ type	IPR017930, IPR000433; IPR017930, IPR000433	Myb domain, Zinc finger, ZZ-type; Myb domain, Zinc finger, ZZ-type
hsd_id_Theobroma_cacao_1237	XP_007026334.2; XP_017973504.1	121; 89	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1238	XP_007026336.2; XP_007034252.1	691; 692	Pfam	PF10551, PF03101, PF04434; PF03101, PF10551, PF04434	MULE transposase domain, FAR1 DNA-binding domain, SWIM zinc finger; FAR1 DNA-binding domain, MULE transposase domain, SWIM zinc finger	IPR018289, IPR004330, IPR007527; IPR004330, IPR018289, IPR007527	MULE transposase domain, FAR1 DNA binding domain, Zinc finger, SWIM-type; FAR1 DNA binding domain, MULE transposase domain, Zinc finger, SWIM-type
hsd_id_Theobroma_cacao_1239	XP_007026386.1; XP_007049378.1	422; 407	Pfam	PF00108, PF02803; PF02803, PF00108	Thiolase, N-terminal domain, Thiolase, C-terminal domain; Thiolase, C-terminal domain, Thiolase, N-terminal domain	IPR020616, IPR020617; IPR020617, IPR020616	Thiolase, N-terminal, Thiolase, C-terminal; Thiolase, C-terminal, Thiolase, N-terminal
hsd_id_Theobroma_cacao_1240	XP_007026395.1; XP_017977430.1	311; 372	Pfam	PF13344, PF13242; PF13242, PF13344	Haloacid dehalogenase-like hydrolase, HAD-hyrolase-like; HAD-hyrolase-like, Haloacid dehalogenase-like hydrolase	IPR006357, -; -, IPR006357	HAD-superfamily hydrolase, subfamily IIA, -; -, HAD-superfamily hydrolase, subfamily IIA
hsd_id_Theobroma_cacao_1241	XP_007026422.2; XP_017980195.1	1420; 1392	Pfam	PF16529; PF16529	WD40 region of Ge1, enhancer of mRNA-decapping protein; WD40 region of Ge1, enhancer of mRNA-decapping protein	IPR032401; IPR032401	Enhancer of mRNA-decapping protein 4, WD40 repeat region; Enhancer of mRNA-decapping protein 4, WD40 repeat region
hsd_id_Theobroma_cacao_1242	XP_007026430.1; XP_017983769.1; XP_017971520.1; XP_017981380.1; XP_007032943.2	626; 676; 685; 565; 554	Pfam	PF01501; PF01501; PF01501; PF01501; PF01501	Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8	IPR002495; IPR002495; IPR002495; IPR002495; IPR002495	Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8
hsd_id_Theobroma_cacao_1243	XP_007026439.2; XP_017975010.1	492; 587	Pfam	PF12146; PF12146	Serine aminopeptidase, S33; Serine aminopeptidase, S33	IPR022742; IPR022742	Serine aminopeptidase, S33; Serine aminopeptidase, S33
hsd_id_Theobroma_cacao_1244	XP_007026485.2; XP_007027686.1	322; 344	Pfam	PF01156; PF01156	Inosine-uridine preferring nucleoside hydrolase; Inosine-uridine preferring nucleoside hydrolase	IPR001910; IPR001910	Inosine/uridine-preferring nucleoside hydrolase domain; Inosine/uridine-preferring nucleoside hydrolase domain
hsd_id_Theobroma_cacao_1245	XP_007026491.2; XP_007039142.2	330; 341	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1246	XP_007026496.2; XP_017977286.1	1168; 1128	Pfam	PF03372; PF03372	Endonuclease/Exonuclease/phosphatase family; Endonuclease/Exonuclease/phosphatase family	IPR005135; IPR005135	Endonuclease/exonuclease/phosphatase; Endonuclease/exonuclease/phosphatase
hsd_id_Theobroma_cacao_1247	XP_007026503.2; XP_007026504.2; XP_017976765.1	392; 394; 395	Pfam	PF00295; PF00295; PF00295	Glycosyl hydrolases family 28; Glycosyl hydrolases family 28; Glycosyl hydrolases family 28	IPR000743; IPR000743; IPR000743	Glycoside hydrolase, family 28; Glycoside hydrolase, family 28; Glycoside hydrolase, family 28
hsd_id_Theobroma_cacao_1248	XP_007026518.2; XP_007040204.2; XP_017982885.1; XP_007040205.1	201; 235; 239; 172	Pfam	PF00255; PF00255; PF00255; PF00255	Glutathione peroxidase; Glutathione peroxidase; Glutathione peroxidase; Glutathione peroxidase	IPR000889; IPR000889; IPR000889; IPR000889	Glutathione peroxidase; Glutathione peroxidase; Glutathione peroxidase; Glutathione peroxidase
hsd_id_Theobroma_cacao_1249	XP_007026546.2; XP_017977379.1	503; 493	Pfam	PF06963; PF06963	Ferroportin1 (FPN1); Ferroportin1 (FPN1)	IPR009716; IPR009716	Ferroportin-1; Ferroportin-1
hsd_id_Theobroma_cacao_1250	XP_007026548.1; XP_007026549.2	198; 197	Pfam	PF04535; PF04535	Domain of unknown function (DUF588); Domain of unknown function (DUF588)	IPR006702; IPR006702	Casparian strip membrane protein domain; Casparian strip membrane protein domain
hsd_id_Theobroma_cacao_1251	XP_007026574.1; XP_017981673.1	547; 544	Pfam	PF01554; PF01554	MatE; MatE	IPR002528; IPR002528	Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein
hsd_id_Theobroma_cacao_1252	XP_007026586.2; XP_007026588.2; XP_017984467.1; XP_017984468.1; XP_017984731.1; XP_007008938.1; XP_007008936.2	444; 422; 424; 422; 417; 515; 461	Pfam	PF14416, PF13839; PF14416, PF13839; PF14416, PF13839; PF13839, PF14416; PF14416, PF13839; PF14416, PF13839; PF14416, PF13839	PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p	IPR025846, IPR026057; IPR025846, IPR026057; IPR025846, IPR026057; IPR026057, IPR025846; IPR025846, IPR026057; IPR025846, IPR026057; IPR025846, IPR026057	PMR5 N-terminal domain, PC-Esterase; PMR5 N-terminal domain, PC-Esterase; PMR5 N-terminal domain, PC-Esterase; PC-Esterase, PMR5 N-terminal domain; PMR5 N-terminal domain, PC-Esterase; PMR5 N-terminal domain, PC-Esterase; PMR5 N-terminal domain, PC-Esterase
hsd_id_Theobroma_cacao_1253	XP_007026596.2; XP_007050962.1	262; 262	Pfam	PF00467, PF08071, PF01479, PF00900, PF16121; PF00900, PF00467, PF08071, PF01479, PF16121	KOW motif, RS4NT (NUC023) domain, S4 domain, Ribosomal family S4e, 40S ribosomal protein S4 C-terminus; Ribosomal family S4e, KOW motif, RS4NT (NUC023) domain, S4 domain, 40S ribosomal protein S4 C-terminus	IPR005824, IPR013843, IPR002942, IPR013845, IPR032277; IPR013845, IPR005824, IPR013843, IPR002942, IPR032277	KOW, Ribosomal protein S4e, N-terminal, RNA-binding S4 domain, Ribosomal protein S4e, central region, 40S ribosomal protein S4, C-terminal domain; Ribosomal protein S4e, central region, KOW, Ribosomal protein S4e, N-terminal, RNA-binding S4 domain, 40S ribosomal protein S4, C-terminal domain
hsd_id_Theobroma_cacao_1254	XP_007026601.2; XP_007016964.2; XP_017977527.1	254; 259; 236	Pfam	PF03227; PF03227; PF03227	Gamma interferon inducible lysosomal thiol reductase (GILT); Gamma interferon inducible lysosomal thiol reductase (GILT); Gamma interferon inducible lysosomal thiol reductase (GILT)	IPR004911; IPR004911; IPR004911	Gamma interferon inducible lysosomal thiol reductase GILT; Gamma interferon inducible lysosomal thiol reductase GILT; Gamma interferon inducible lysosomal thiol reductase GILT
hsd_id_Theobroma_cacao_1255	XP_007026608.1; XP_017973524.1; XP_017973627.1	874; 868; 868	Pfam	PF03810, PF13513; PF13513, PF03810; PF13513, PF03810	Importin-beta N-terminal domain, HEAT-like repeat; HEAT-like repeat, Importin-beta N-terminal domain; HEAT-like repeat, Importin-beta N-terminal domain	IPR001494, -; -, IPR001494; -, IPR001494	Importin-beta, N-terminal domain, -; -, Importin-beta, N-terminal domain; -, Importin-beta, N-terminal domain
hsd_id_Theobroma_cacao_1256	XP_007026621.2; XP_017983944.1	273; 275	Pfam	PF02179, PF00240; PF02179, PF00240	BAG domain, Ubiquitin family; BAG domain, Ubiquitin family	IPR003103, IPR000626; IPR003103, IPR000626	BAG domain, Ubiquitin-like domain; BAG domain, Ubiquitin-like domain
hsd_id_Theobroma_cacao_1257	XP_007026656.2; XP_017971693.1	842; 909	Pfam	PF00962; PF00962	Adenosine/AMP deaminase; Adenosine/AMP deaminase	IPR001365; IPR001365	Adenosine/AMP deaminase domain; Adenosine/AMP deaminase domain
hsd_id_Theobroma_cacao_1258	XP_007026669.2; XP_017984923.1	1095; 1114	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1259	XP_007026685.2; XP_017984135.1	360; 359	Pfam	PF03171, PF14226; PF03171, PF14226	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR044861, IPR026992; IPR044861, IPR026992	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_1260	XP_007026695.2; XP_017981184.1	1336; 1335	Pfam	PF11935, PF12295; PF12295, PF11935	Domain of unknown function (DUF3453), Symplekin tight junction protein C terminal; Symplekin tight junction protein C terminal, Domain of unknown function (DUF3453)	IPR032460, IPR022075; IPR022075, IPR032460	Symplekin/Pta1, N-terminal, Symplekin  C-terminal; Symplekin  C-terminal, Symplekin/Pta1, N-terminal
hsd_id_Theobroma_cacao_1261	XP_007026699.1; XP_017978963.1	309; 305	Pfam	PF01680; PF01680	SOR/SNZ family; SOR/SNZ family	IPR033755; IPR033755	PdxS/SNZ N-terminal domain; PdxS/SNZ N-terminal domain
hsd_id_Theobroma_cacao_1262	XP_007026701.2; XP_017983708.1	488; 474	Pfam	PF16040, PF16041, PF13920; PF13920, PF16040, PF16041	Domain of unknown function (DUF4792), Domain of unknown function (DUF4793), Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger), Domain of unknown function (DUF4792), Domain of unknown function (DUF4793)	IPR032008, IPR032010, -; -, IPR032008, IPR032010	Domain of unknown function DUF4792, Domain of unknown function DUF4793, -; -, Domain of unknown function DUF4792, Domain of unknown function DUF4793
hsd_id_Theobroma_cacao_1263	XP_007026719.2; XP_017982661.1	312; 317	Pfam	PF01255; PF01255	Putative undecaprenyl diphosphate synthase; Putative undecaprenyl diphosphate synthase	IPR001441; IPR001441	Decaprenyl diphosphate synthase-like; Decaprenyl diphosphate synthase-like
hsd_id_Theobroma_cacao_1264	XP_007026769.2; XP_017977652.1; XP_017970681.1; XP_007032348.2; XP_017984200.1	503; 500; 503; 507; 488	Pfam	PF01553, PF12710; PF12710, PF01553; PF01553, PF12710; PF12710, PF01553; PF01553, PF12710	Acyltransferase, haloacid dehalogenase-like hydrolase; haloacid dehalogenase-like hydrolase, Acyltransferase; Acyltransferase, haloacid dehalogenase-like hydrolase; haloacid dehalogenase-like hydrolase, Acyltransferase; Acyltransferase, haloacid dehalogenase-like hydrolase	IPR002123, -; -, IPR002123; IPR002123, -; -, IPR002123; IPR002123, -	Phospholipid/glycerol acyltransferase, -; -, Phospholipid/glycerol acyltransferase; Phospholipid/glycerol acyltransferase, -; -, Phospholipid/glycerol acyltransferase; Phospholipid/glycerol acyltransferase, -
hsd_id_Theobroma_cacao_1265	XP_007026771.1; XP_017984145.1	310; 344	Pfam	PF13012, PF01398; PF13012, PF01398	Maintenance of mitochondrial structure and function, JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Maintenance of mitochondrial structure and function, JAB1/Mov34/MPN/PAD-1 ubiquitin protease	IPR024969, IPR000555; IPR024969, IPR000555	Rpn11/EIF3F, C-terminal, JAB1/MPN/MOV34 metalloenzyme domain; Rpn11/EIF3F, C-terminal, JAB1/MPN/MOV34 metalloenzyme domain
hsd_id_Theobroma_cacao_1266	XP_007026810.2; XP_007029069.1	164; 164	Pfam	PF01157; PF01157	Ribosomal protein L21e; Ribosomal protein L21e	IPR001147; IPR001147	Ribosomal protein L21e; Ribosomal protein L21e
hsd_id_Theobroma_cacao_1267	XP_007026812.2; XP_017983151.1	305; 300	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_1268	XP_007026831.1; XP_007041599.2; XP_017981497.1	410; 342; 341	Pfam	PF00316, PF18913; PF18913, PF00316; PF00316, PF18913	Fructose-1-6-bisphosphatase, N-terminal domain, Fructose-1-6-bisphosphatase, C-terminal domain; Fructose-1-6-bisphosphatase, C-terminal domain, Fructose-1-6-bisphosphatase, N-terminal domain; Fructose-1-6-bisphosphatase, N-terminal domain, Fructose-1-6-bisphosphatase, C-terminal domain	IPR033391, IPR044015; IPR044015, IPR033391; IPR033391, IPR044015	Fructose-1-6-bisphosphatase class I, N-terminal, Fructose-1-6-bisphosphatase class 1, C-terminal; Fructose-1-6-bisphosphatase class 1, C-terminal, Fructose-1-6-bisphosphatase class I, N-terminal; Fructose-1-6-bisphosphatase class I, N-terminal, Fructose-1-6-bisphosphatase class 1, C-terminal
hsd_id_Theobroma_cacao_1269	XP_007026832.2; XP_007038703.2	179; 183	Pfam	PF06521; PF06521	PAR1 protein; PAR1 protein	IPR009489; IPR009489	PAR1; PAR1
hsd_id_Theobroma_cacao_1270	XP_007026838.2; XP_017982704.1; XP_007040220.2; XP_017984665.1	491; 487; 488; 491	Pfam	PF07714; PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1271	XP_007026839.1; XP_017982705.1	315; 289	Pfam	PF14360; PF14360	PAP2 superfamily C-terminal; PAP2 superfamily C-terminal	IPR025749; IPR025749	Sphingomyelin synthase-like domain; Sphingomyelin synthase-like domain
hsd_id_Theobroma_cacao_1272	XP_007026884.2; XP_017984810.1	355; 345	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_1273	XP_007026888.2; XP_017972533.1	589; 598	Pfam	PF00854; PF00854	POT family; POT family	IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_1274	XP_007026895.2; XP_017976339.1; XP_017977300.1	812; 809; 835	Pfam	PF00069, PF00954, PF01453, PF08276; PF08276, PF01453, PF00069, PF00954; PF08276, PF00069, PF00954, PF01453	Protein kinase domain, S-locus glycoprotein domain, D-mannose binding lectin, PAN-like domain; PAN-like domain, D-mannose binding lectin, Protein kinase domain, S-locus glycoprotein domain; PAN-like domain, Protein kinase domain, S-locus glycoprotein domain, D-mannose binding lectin	IPR000719, IPR000858, IPR001480, IPR003609; IPR003609, IPR001480, IPR000719, IPR000858; IPR003609, IPR000719, IPR000858, IPR001480	Protein kinase domain, S-locus glycoprotein domain, Bulb-type lectin domain, PAN/Apple domain; PAN/Apple domain, Bulb-type lectin domain, Protein kinase domain, S-locus glycoprotein domain; PAN/Apple domain, Protein kinase domain, S-locus glycoprotein domain, Bulb-type lectin domain
hsd_id_Theobroma_cacao_1275	XP_007026917.2; XP_007026918.2; XP_017977231.1; XP_017977232.1; XP_017977020.1; XP_017977019.1	318; 315; 350; 318; 315; 316	Pfam	PF00248; PF00248; PF00248; PF00248; PF00248; PF00248	Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family	IPR023210; IPR023210; IPR023210; IPR023210; IPR023210; IPR023210	NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain
hsd_id_Theobroma_cacao_1276	XP_007026942.2; XP_017972715.1; XP_007035035.2; XP_007009276.2; XP_017973514.1; XP_017982615.1; XP_007026943.2; XP_007050365.1; XP_007035036.1	305; 250; 232; 291; 202; 176; 169; 182; 182	Pfam	PF13912; PF13912; PF13912; PF13912; PF13912; PF13912; PF13912; PF13912; PF13912	C2H2-type zinc finger; C2H2-type zinc finger; C2H2-type zinc finger; C2H2-type zinc finger; C2H2-type zinc finger; C2H2-type zinc finger; C2H2-type zinc finger; C2H2-type zinc finger; C2H2-type zinc finger	-; -; -; -; -; -; -; -; -	-; -; -; -; -; -; -; -; -
hsd_id_Theobroma_cacao_1277	XP_007026949.2; XP_007026953.2; XP_007026951.2; XP_017982159.1; XP_017982599.1; XP_007026954.2; XP_007026957.2	683; 669; 669; 675; 688; 668; 655	Pfam	PF00069, PF00139; PF00069, PF00139; PF00069, PF00139; PF00139, PF00069; PF00139, PF00069; PF00139, PF00069; PF00139, PF00069	Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain	IPR000719, IPR001220; IPR000719, IPR001220; IPR000719, IPR001220; IPR001220, IPR000719; IPR001220, IPR000719; IPR001220, IPR000719; IPR001220, IPR000719	Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain
hsd_id_Theobroma_cacao_1278	XP_007026950.2; XP_017976348.1	101; 101	Pfam	PF00280; PF00280	Potato inhibitor I family; Potato inhibitor I family	IPR000864; IPR000864	Proteinase inhibitor I13, potato inhibitor I; Proteinase inhibitor I13, potato inhibitor I
hsd_id_Theobroma_cacao_1279	XP_007026971.1; XP_017984624.1	535; 551	Pfam	PF01490; PF01490	Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein	IPR013057; IPR013057	Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain
hsd_id_Theobroma_cacao_1280	XP_007026972.2; XP_017984740.1	447; 446	Pfam	PF14541, PF14543; PF14541, PF14543	Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal	IPR032799, IPR032861; IPR032799, IPR032861	Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal
hsd_id_Theobroma_cacao_1281	XP_007027017.2; XP_007033325.1	357; 362	Pfam	PF13921; PF13921	Myb-like DNA-binding domain; Myb-like DNA-binding domain	-; -	-; -
hsd_id_Theobroma_cacao_1282	XP_007027026.1; XP_017983222.1	82; 73	Pfam	PF01439; PF01439	Metallothionein; Metallothionein	IPR000347; IPR000347	Metallothionein, family 15, plant; Metallothionein, family 15, plant
hsd_id_Theobroma_cacao_1283	XP_007027030.2; XP_007051327.2; XP_017972996.1; XP_017976912.1; XP_017972991.1; XP_007040902.2; XP_007040900.2	418; 458; 406; 412; 441; 401; 399	Pfam	PF03283; PF03283; PF03283; PF03283; PF03283; PF03283; PF03283	Pectinacetylesterase; Pectinacetylesterase; Pectinacetylesterase; Pectinacetylesterase; Pectinacetylesterase; Pectinacetylesterase; Pectinacetylesterase	IPR004963; IPR004963; IPR004963; IPR004963; IPR004963; IPR004963; IPR004963	Pectinacetylesterase/NOTUM; Pectinacetylesterase/NOTUM; Pectinacetylesterase/NOTUM; Pectinacetylesterase/NOTUM; Pectinacetylesterase/NOTUM; Pectinacetylesterase/NOTUM; Pectinacetylesterase/NOTUM
hsd_id_Theobroma_cacao_1284	XP_007027041.1; XP_017982233.1	209; 222	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1285	XP_007027043.2; XP_007027044.2	138; 134	Pfam	PF05641; PF05641	Agenet domain; Agenet domain	IPR008395; IPR008395	Agenet-like domain; Agenet-like domain
hsd_id_Theobroma_cacao_1286	XP_007027046.2; XP_017977428.1	290; 353	Pfam	PF02319, PF08781; PF08781, PF02319	E2F/DP family winged-helix DNA-binding domain, Transcription factor DP; Transcription factor DP, E2F/DP family winged-helix DNA-binding domain	IPR003316, IPR014889; IPR014889, IPR003316	E2F/DP family, winged-helix DNA-binding domain, Transcription factor DP, C-terminal; Transcription factor DP, C-terminal, E2F/DP family, winged-helix DNA-binding domain
hsd_id_Theobroma_cacao_1287	XP_007027050.1; XP_007051746.1; XP_007048067.1; XP_007040308.2; XP_017971626.1; XP_017978321.1	164; 168; 162; 175; 157; 155	Pfam	PF13639; PF13639; PF13639; PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841; IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_1288	XP_007027070.2; XP_017983484.1	240; 241	Pfam	PF13865, PF00076; PF13865, PF00076	C-terminal duplication domain of Friend of PRMT1, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); C-terminal duplication domain of Friend of PRMT1, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR025715, IPR000504; IPR025715, IPR000504	Chromatin target of PRMT1 protein, C-terminal, RNA recognition motif domain; Chromatin target of PRMT1 protein, C-terminal, RNA recognition motif domain
hsd_id_Theobroma_cacao_1289	XP_007027074.2; XP_017976140.1; XP_017973931.1; XP_017976347.1; XP_007040406.2; XP_007048418.2	837; 786; 806; 796; 803; 830	Pfam	PF00999; PF00999; PF00999; PF00999; PF00999; PF00999	Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family	IPR006153; IPR006153; IPR006153; IPR006153; IPR006153; IPR006153	Cation/H+ exchanger; Cation/H+ exchanger; Cation/H+ exchanger; Cation/H+ exchanger; Cation/H+ exchanger; Cation/H+ exchanger
hsd_id_Theobroma_cacao_1290	XP_007027080.2; XP_007039491.2; XP_017980519.1; XP_017978731.1	467; 405; 527; 482	Pfam	PF01412; PF01412; PF01412; PF01412	Putative GTPase activating protein for Arf; Putative GTPase activating protein for Arf; Putative GTPase activating protein for Arf; Putative GTPase activating protein for Arf	IPR001164; IPR001164; IPR001164; IPR001164	Arf GTPase activating protein; Arf GTPase activating protein; Arf GTPase activating protein; Arf GTPase activating protein
hsd_id_Theobroma_cacao_1291	XP_007027083.1; XP_017973019.1; XP_017972658.1; XP_017973018.1; XP_007036371.2; XP_007040629.2	391; 313; 315; 318; 359; 340	Pfam	PF00106; PF00106; PF00106; PF00106; PF00106; PF00106	short chain dehydrogenase; short chain dehydrogenase; short chain dehydrogenase; short chain dehydrogenase; short chain dehydrogenase; short chain dehydrogenase	IPR002347; IPR002347; IPR002347; IPR002347; IPR002347; IPR002347	Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR
hsd_id_Theobroma_cacao_1292	XP_007027117.2; XP_017976705.1	490; 471	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1293	XP_007027127.1; XP_017970345.1	282; 310	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1294	XP_007027143.1; XP_017976775.1; XP_007039375.2	438; 449; 436	Pfam	PF06814; PF06814; PF06814	Lung seven transmembrane receptor; Lung seven transmembrane receptor; Lung seven transmembrane receptor	IPR009637; IPR009637; IPR009637	Transmembrane protein GPR107/GPR108-like; Transmembrane protein GPR107/GPR108-like; Transmembrane protein GPR107/GPR108-like
hsd_id_Theobroma_cacao_1295	XP_007027145.2; XP_017982640.1	140; 144	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1296	XP_007027150.1; XP_017976290.1	686; 696	Pfam	PF01061, PF00005; PF00005, PF01061	ABC-2 type transporter, ABC transporter; ABC transporter, ABC-2 type transporter	IPR013525, IPR003439; IPR003439, IPR013525	ABC-2 type transporter, ABC transporter-like, ATP-binding domain; ABC transporter-like, ATP-binding domain, ABC-2 type transporter
hsd_id_Theobroma_cacao_1297	XP_007027187.1; XP_017984811.1	235; 266	Pfam	PF13410, PF13417; PF13417, PF13410	Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain	-, IPR004045; IPR004045, -	-, Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal, -
hsd_id_Theobroma_cacao_1298	XP_007027189.2; XP_017984934.1	876; 857	Pfam	PF00566; PF00566	Rab-GTPase-TBC domain; Rab-GTPase-TBC domain	IPR000195; IPR000195	Rab-GTPase-TBC domain; Rab-GTPase-TBC domain
hsd_id_Theobroma_cacao_1299	XP_007027205.2; XP_017985168.1	288; 305	Pfam	PF00406; PF00406	Adenylate kinase; Adenylate kinase	-; -	-; -
hsd_id_Theobroma_cacao_1300	XP_007027211.2; XP_017984099.1	359; 364	Pfam	PF16543; PF16543	DRG Family Regulatory Proteins, Tma46; DRG Family Regulatory Proteins, Tma46	IPR032378; IPR032378	ZC3H15/TMA46 family, C-terminal; ZC3H15/TMA46 family, C-terminal
hsd_id_Theobroma_cacao_1301	XP_007027215.2; XP_017973013.1; XP_007051714.2	305; 318; 345	Pfam	PF00249; PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930; IPR017930	Myb domain; Myb domain; Myb domain
hsd_id_Theobroma_cacao_1302	XP_007027218.1; XP_007048146.2	408; 406	Pfam	PF00573, PF14374; PF14374, PF00573	Ribosomal protein L4/L1 family, 60S ribosomal protein L4 C-terminal domain; 60S ribosomal protein L4 C-terminal domain, Ribosomal protein L4/L1 family	IPR002136, IPR025755; IPR025755, IPR002136	Ribosomal protein L4/L1e, 60S ribosomal protein L4, C-terminal domain; 60S ribosomal protein L4, C-terminal domain, Ribosomal protein L4/L1e
hsd_id_Theobroma_cacao_1303	XP_007027225.2; XP_017983257.1	1004; 1048	Pfam	PF00076, PF14570; PF14570, PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), RING/Ubox like zinc-binding domain; RING/Ubox like zinc-binding domain, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504, -; -, IPR000504	RNA recognition motif domain, -; -, RNA recognition motif domain
hsd_id_Theobroma_cacao_1304	XP_007027234.2; XP_017971672.1	926; 932	Pfam	PF12819, PF07714; PF07714, PF12819	Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain	IPR024788, IPR001245; IPR001245, IPR024788	Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain
hsd_id_Theobroma_cacao_1305	XP_007027236.2; XP_017985159.1; XP_017979530.1; XP_007049366.2; XP_017978029.1; XP_017969300.1; XP_017976071.1; XP_007035553.2; XP_007050837.2; XP_017978211.1; XP_007030959.1; XP_017980261.1	177; 179; 187; 213; 186; 226; 216; 166; 175; 213; 144; 223	Pfam	PF00808; PF00808; PF00808; PF00808; PF00808; PF00808; PF00808; PF00808; PF00808; PF00808; PF00808; PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone	IPR003958; IPR003958; IPR003958; IPR003958; IPR003958; IPR003958; IPR003958; IPR003958; IPR003958; IPR003958; IPR003958; IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain
hsd_id_Theobroma_cacao_1306	XP_007027285.2; XP_017975802.1; XP_017971178.1	714; 690; 701	Pfam	PF00139, PF00069; PF00069, PF00139; PF00139, PF00069	Legume lectin domain, Protein kinase domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain	IPR001220, IPR000719; IPR000719, IPR001220; IPR001220, IPR000719	Legume lectin domain, Protein kinase domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain
hsd_id_Theobroma_cacao_1307	XP_007027295.2; XP_017982959.1; XP_017981621.1	267; 267; 270	Pfam	PF05739; PF05739; PF05739	SNARE domain; SNARE domain; SNARE domain	IPR000727; IPR000727; IPR000727	Target SNARE coiled-coil homology domain; Target SNARE coiled-coil homology domain; Target SNARE coiled-coil homology domain
hsd_id_Theobroma_cacao_1308	XP_007027331.1; XP_017982120.1	166; 166	Pfam	PF00298, PF03946; PF03946, PF00298	Ribosomal protein L11, RNA binding domain, Ribosomal protein L11, N-terminal domain; Ribosomal protein L11, N-terminal domain, Ribosomal protein L11, RNA binding domain	IPR020783, IPR020784; IPR020784, IPR020783	Ribosomal protein L11, C-terminal, Ribosomal protein L11, N-terminal; Ribosomal protein L11, N-terminal, Ribosomal protein L11, C-terminal
hsd_id_Theobroma_cacao_1309	XP_007027354.1; XP_017984795.1; XP_017983837.1	722; 713; 713	Pfam	PF00221; PF00221; PF00221	Aromatic amino acid lyase; Aromatic amino acid lyase; Aromatic amino acid lyase	IPR001106; IPR001106; IPR001106	Aromatic amino acid lyase; Aromatic amino acid lyase; Aromatic amino acid lyase
hsd_id_Theobroma_cacao_1310	XP_007027370.2; XP_017982528.1; XP_017984931.1; XP_017983816.1	1098; 1117; 1120; 1097	Pfam	PF00005, PF19055; PF00005, PF19055; PF00005, PF19055; PF19055, PF00005	ABC transporter, ABC-2 type transporter; ABC transporter, ABC-2 type transporter; ABC transporter, ABC-2 type transporter; ABC-2 type transporter, ABC transporter	IPR003439, IPR043926; IPR003439, IPR043926; IPR003439, IPR043926; IPR043926, IPR003439	ABC transporter-like, ATP-binding domain, ABC transporter family G domain; ABC transporter-like, ATP-binding domain, ABC transporter family G domain; ABC transporter-like, ATP-binding domain, ABC transporter family G domain; ABC transporter family G domain, ABC transporter-like, ATP-binding domain
hsd_id_Theobroma_cacao_1311	XP_007027373.2; XP_017982008.1	337; 370	Pfam	PF02338; PF02338	OTU-like cysteine protease; OTU-like cysteine protease	IPR003323; IPR003323	OTU domain; OTU domain
hsd_id_Theobroma_cacao_1312	XP_007027375.2; XP_017982439.1	214; 194	Pfam	PF03634; PF03634	TCP family transcription factor; TCP family transcription factor	IPR017887; IPR017887	Transcription factor TCP subgroup; Transcription factor TCP subgroup
hsd_id_Theobroma_cacao_1313	XP_007027461.2; XP_017984656.1	486; 493	Pfam	PF00544; PF00544	Pectate lyase; Pectate lyase	IPR002022; IPR002022	Pectate lyase; Pectate lyase
hsd_id_Theobroma_cacao_1314	XP_007027515.2; XP_007049055.1	400; 396	Pfam	PF01095; PF01095	Pectinesterase; Pectinesterase	IPR000070; IPR000070	Pectinesterase, catalytic; Pectinesterase, catalytic
hsd_id_Theobroma_cacao_1315	XP_007027576.2; XP_007038604.2; XP_017973812.1; XP_017969786.1	297; 282; 293; 288	Pfam	PF14299; PF14299; PF14299; PF14299	Phloem protein 2; Phloem protein 2; Phloem protein 2; Phloem protein 2	IPR025886; IPR025886; IPR025886; IPR025886	Phloem protein 2-like; Phloem protein 2-like; Phloem protein 2-like; Phloem protein 2-like
hsd_id_Theobroma_cacao_1316	XP_007027623.1; XP_007015942.1	93; 142	Pfam	PF06404; PF06404	Phytosulfokine precursor protein (PSK); Phytosulfokine precursor protein (PSK)	IPR009438; IPR009438	Phytosulfokine; Phytosulfokine
hsd_id_Theobroma_cacao_1317	XP_007027668.2; XP_017982746.1	874; 863	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1318	XP_007027671.1; XP_007031493.2; XP_017980513.1	434; 478; 555	Pfam	PF07992; PF07992; PF07992	Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase	IPR023753; IPR023753; IPR023753	FAD/NAD(P)-binding domain; FAD/NAD(P)-binding domain; FAD/NAD(P)-binding domain
hsd_id_Theobroma_cacao_1319	XP_007027679.2; XP_017982413.1; XP_017969916.1; XP_017982414.1; XP_007009170.1; XP_007009168.2; XP_017984507.1; XP_017984476.1; XP_017984477.1; XP_007040097.2; XP_017972710.1; XP_007016592.2; XP_017982434.1; XP_017982177.1	744; 739; 771; 742; 739; 738; 736; 738; 702; 773; 774; 744; 733; 739	Pfam	PF05922, PF17766, PF00082; PF17766, PF00082, PF05922; PF05922, PF00082, PF17766; PF17766, PF00082, PF05922; PF00082, PF05922, PF17766; PF05922, PF00082, PF17766; PF17766, PF00082, PF05922; PF17766, PF05922, PF00082; PF00082, PF05922, PF17766; PF05922, PF17766, PF00082; PF05922, PF00082, PF17766; PF05922, PF00082, PF17766; PF05922, PF17766, PF00082; PF05922, PF00082, PF17766	Peptidase inhibitor I9, Fibronectin type-III domain, Subtilase family; Fibronectin type-III domain, Subtilase family, Peptidase inhibitor I9; Peptidase inhibitor I9, Subtilase family, Fibronectin type-III domain; Fibronectin type-III domain, Subtilase family, Peptidase inhibitor I9; Subtilase family, Peptidase inhibitor I9, Fibronectin type-III domain; Peptidase inhibitor I9, Subtilase family, Fibronectin type-III domain; Fibronectin type-III domain, Subtilase family, Peptidase inhibitor I9; Fibronectin type-III domain, Peptidase inhibitor I9, Subtilase family; Subtilase family, Peptidase inhibitor I9, Fibronectin type-III domain; Peptidase inhibitor I9, Fibronectin type-III domain, Subtilase family; Peptidase inhibitor I9, Subtilase family, Fibronectin type-III domain; Peptidase inhibitor I9, Subtilase family, Fibronectin type-III domain; Peptidase inhibitor I9, Fibronectin type-III domain, Subtilase family; Peptidase inhibitor I9, Subtilase family, Fibronectin type-III domain	IPR010259, IPR041469, IPR000209; IPR041469, IPR000209, IPR010259; IPR010259, IPR000209, IPR041469; IPR041469, IPR000209, IPR010259; IPR000209, IPR010259, IPR041469; IPR010259, IPR000209, IPR041469; IPR041469, IPR000209, IPR010259; IPR041469, IPR010259, IPR000209; IPR000209, IPR010259, IPR041469; IPR010259, IPR041469, IPR000209; IPR010259, IPR000209, IPR041469; IPR010259, IPR000209, IPR041469; IPR010259, IPR041469, IPR000209; IPR010259, IPR000209, IPR041469	Peptidase S8 propeptide/proteinase inhibitor I9, Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain; Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9; Peptidase S8 propeptide/proteinase inhibitor I9, Peptidase S8/S53 domain, Subtilisin-like protease, fibronectin type-III domain; Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9; Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9, Subtilisin-like protease, fibronectin type-III domain; Peptidase S8 propeptide/proteinase inhibitor I9, Peptidase S8/S53 domain, Subtilisin-like protease, fibronectin type-III domain; Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9; Subtilisin-like protease, fibronectin type-III domain, Peptidase S8 propeptide/proteinase inhibitor I9, Peptidase S8/S53 domain; Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9, Subtilisin-like protease, fibronectin type-III domain; Peptidase S8 propeptide/proteinase inhibitor I9, Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain; Peptidase S8 propeptide/proteinase inhibitor I9, Peptidase S8/S53 domain, Subtilisin-like protease, fibronectin type-III domain; Peptidase S8 propeptide/proteinase inhibitor I9, Peptidase S8/S53 domain, Subtilisin-like protease, fibronectin type-III domain; Peptidase S8 propeptide/proteinase inhibitor I9, Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain; Peptidase S8 propeptide/proteinase inhibitor I9, Peptidase S8/S53 domain, Subtilisin-like protease, fibronectin type-III domain
hsd_id_Theobroma_cacao_1320	XP_007027734.2; XP_017982782.1	169; 165	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1321	XP_007027782.1; XP_017982709.1; XP_007051458.2; XP_007050754.2	485; 494; 501; 480	Pfam	PF00620, PF00786; PF00786, PF00620; PF00786, PF00620; PF00786, PF00620	RhoGAP domain, P21-Rho-binding domain; P21-Rho-binding domain, RhoGAP domain; P21-Rho-binding domain, RhoGAP domain; P21-Rho-binding domain, RhoGAP domain	IPR000198, IPR000095; IPR000095, IPR000198; IPR000095, IPR000198; IPR000095, IPR000198	Rho GTPase-activating protein domain, CRIB domain; CRIB domain, Rho GTPase-activating protein domain; CRIB domain, Rho GTPase-activating protein domain; CRIB domain, Rho GTPase-activating protein domain
hsd_id_Theobroma_cacao_1322	XP_007027810.2; XP_017976234.1; XP_007045252.2	365; 365; 359	Pfam	PF14226, PF03171; PF03171, PF14226; PF03171, PF14226	non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR026992, IPR044861; IPR044861, IPR026992; IPR044861, IPR026992	Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_1323	XP_007027818.1; XP_007038235.2	309; 308	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1324	XP_007027824.2; XP_017979514.1; XP_007025240.2	202; 209; 143	Pfam	PF04520; PF04520; PF04520	Senescence regulator; Senescence regulator; Senescence regulator	IPR007608; IPR007608; IPR007608	Senescence regulator S40; Senescence regulator S40; Senescence regulator S40
hsd_id_Theobroma_cacao_1325	XP_007027869.2; XP_017981945.1	672; 658	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1326	XP_007027916.1; XP_017971055.1	146; 159	Pfam	PF00179; PF00179	Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme	IPR000608; IPR000608	Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2
hsd_id_Theobroma_cacao_1327	XP_007027918.2; XP_017984156.1; XP_017970638.1	259; 225; 255	Pfam	PF04844; PF04844; PF04844	Transcriptional repressor, ovate; Transcriptional repressor, ovate; Transcriptional repressor, ovate	IPR006458; IPR006458; IPR006458	Ovate  protein family, C-terminal; Ovate  protein family, C-terminal; Ovate  protein family, C-terminal
hsd_id_Theobroma_cacao_1328	XP_007027954.2; XP_017984996.1	643; 651	Pfam	PF03081; PF03081	Exo70 exocyst complex subunit; Exo70 exocyst complex subunit	IPR004140; IPR004140	Exocyst complex component Exo70; Exocyst complex component Exo70
hsd_id_Theobroma_cacao_1329	XP_007027990.1; XP_017982931.1	411; 413	Pfam	PF04564; PF04564	U-box domain; U-box domain	IPR003613; IPR003613	U box domain; U box domain
hsd_id_Theobroma_cacao_1330	XP_007028005.1; XP_007012703.1; XP_007052521.2; XP_007015064.1; XP_007024571.1; XP_007028810.2	328; 342; 323; 315; 341; 361	Pfam	PF02045; PF02045; PF02045; PF02045; PF02045; PF02045	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	IPR001289; IPR001289; IPR001289; IPR001289; IPR001289; IPR001289	Nuclear transcription factor Y subunit A; Nuclear transcription factor Y subunit A; Nuclear transcription factor Y subunit A; Nuclear transcription factor Y subunit A; Nuclear transcription factor Y subunit A; Nuclear transcription factor Y subunit A
hsd_id_Theobroma_cacao_1331	XP_007028008.2; XP_017976416.1	354; 354	Pfam	PF00319; PF00319	SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain)	IPR002100; IPR002100	Transcription factor, MADS-box; Transcription factor, MADS-box
hsd_id_Theobroma_cacao_1332	XP_007028019.1; XP_017982973.1; XP_017982396.1	156; 160; 122	Pfam	PF02221; PF02221; PF02221	ML domain; ML domain; ML domain	IPR003172; IPR003172; IPR003172	MD-2-related lipid-recognition domain; MD-2-related lipid-recognition domain; MD-2-related lipid-recognition domain
hsd_id_Theobroma_cacao_1333	XP_007028046.2; XP_017982933.1; XP_007034653.2	383; 407; 407	Pfam	PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_1334	XP_007028124.1; XP_007049531.2	623; 619	Pfam	PF08263, PF00069; PF00069, PF08263	Leucine rich repeat N-terminal domain, Protein kinase domain; Protein kinase domain, Leucine rich repeat N-terminal domain	IPR013210, IPR000719; IPR000719, IPR013210	Leucine-rich repeat-containing N-terminal, plant-type, Protein kinase domain; Protein kinase domain, Leucine-rich repeat-containing N-terminal, plant-type
hsd_id_Theobroma_cacao_1335	XP_007028126.2; XP_007033634.2	482; 478	Pfam	PF10369, PF01842, PF13710; PF13710, PF10369, PF01842	Small subunit of acetolactate synthase, ACT domain, ACT domain; ACT domain, Small subunit of acetolactate synthase, ACT domain	IPR019455, IPR002912, -; -, IPR019455, IPR002912	Acetolactate synthase, small subunit, C-terminal, ACT domain, -; -, Acetolactate synthase, small subunit, C-terminal, ACT domain
hsd_id_Theobroma_cacao_1336	XP_007028162.2; XP_017978831.1	619; 620	Pfam	PF00759; PF00759	Glycosyl hydrolase family 9; Glycosyl hydrolase family 9	IPR001701; IPR001701	Glycoside hydrolase family 9; Glycoside hydrolase family 9
hsd_id_Theobroma_cacao_1337	XP_007028210.2; XP_017971185.1	155; 201	Pfam	PF01230; PF01230	HIT domain; HIT domain	IPR001310; IPR001310	Histidine triad (HIT) protein; Histidine triad (HIT) protein
hsd_id_Theobroma_cacao_1338	XP_007028221.2; XP_007038110.2; XP_007043816.1	470; 463; 463	Pfam	PF00450; PF00450; PF00450	Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase	IPR001563; IPR001563; IPR001563	Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase
hsd_id_Theobroma_cacao_1339	XP_007028226.2; XP_007044970.2; XP_017972754.1	445; 436; 444	Pfam	PF02458; PF02458; PF02458	Transferase family; Transferase family; Transferase family	IPR003480; IPR003480; IPR003480	Transferase; Transferase; Transferase
hsd_id_Theobroma_cacao_1340	XP_007028238.2; XP_007051357.2	468; 488	Pfam	PF05978; PF05978	Ion channel regulatory protein UNC-93; Ion channel regulatory protein UNC-93	IPR010291; IPR010291	Ion channel regulatory protein, UNC-93; Ion channel regulatory protein, UNC-93
hsd_id_Theobroma_cacao_1341	XP_007028316.2; XP_007047191.1; XP_017970951.1; XP_017982048.1; XP_017973854.1	576; 630; 607; 606; 575	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1342	XP_007028366.2; XP_007045275.1; XP_017978062.1	612; 621; 579	Pfam	PF07058; PF07058; PF07058	Microtubule-associated protein 70; Microtubule-associated protein 70; Microtubule-associated protein 70	IPR009768; IPR009768; IPR009768	Microtubule-associated protein 70; Microtubule-associated protein 70; Microtubule-associated protein 70
hsd_id_Theobroma_cacao_1343	XP_007028419.1; XP_007028432.1	161; 161	Pfam	PF01849; PF01849	NAC domain; NAC domain	IPR002715; IPR002715	Nascent polypeptide-associated complex NAC domain; Nascent polypeptide-associated complex NAC domain
hsd_id_Theobroma_cacao_1344	XP_007028541.2; XP_007028542.2; XP_017984484.1; XP_007028555.2	462; 459; 431; 464	Pfam	PF03140; PF03140; PF03140; PF03140	Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function	IPR004158; IPR004158; IPR004158; IPR004158	Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant
hsd_id_Theobroma_cacao_1345	XP_007028616.2; XP_017978093.1	415; 406	Pfam	PF00612, PF13178; PF00612, PF13178	IQ calmodulin-binding motif, Protein of unknown function (DUF4005); IQ calmodulin-binding motif, Protein of unknown function (DUF4005)	IPR000048, IPR025064; IPR000048, IPR025064	IQ motif, EF-hand binding site, Domain of unknown function DUF4005; IQ motif, EF-hand binding site, Domain of unknown function DUF4005
hsd_id_Theobroma_cacao_1346	XP_007028655.2; XP_007032052.2; XP_007034442.1; XP_017980892.1	394; 395; 389; 393	Pfam	PF02797, PF00195; PF02797, PF00195; PF00195, PF02797; PF02797, PF00195	Chalcone and stilbene synthases, C-terminal domain, Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, C-terminal domain, Chalcone and stilbene synthases, N-terminal domain; Chalcone and stilbene synthases, N-terminal domain, Chalcone and stilbene synthases, C-terminal domain; Chalcone and stilbene synthases, C-terminal domain, Chalcone and stilbene synthases, N-terminal domain	IPR012328, IPR001099; IPR012328, IPR001099; IPR001099, IPR012328; IPR012328, IPR001099	Chalcone/stilbene synthase, C-terminal, Chalcone/stilbene synthase, N-terminal; Chalcone/stilbene synthase, C-terminal, Chalcone/stilbene synthase, N-terminal; Chalcone/stilbene synthase, N-terminal, Chalcone/stilbene synthase, C-terminal; Chalcone/stilbene synthase, C-terminal, Chalcone/stilbene synthase, N-terminal
hsd_id_Theobroma_cacao_1347	XP_007028693.2; XP_017977681.1	476; 471	Pfam	PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_1348	XP_007028708.2; XP_017984583.1	463; 465	Pfam	PF01210, PF07479; PF07479, PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus, NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus	IPR011128, IPR006109; IPR006109, IPR011128	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal, Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal, Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal
hsd_id_Theobroma_cacao_1349	XP_007028765.2; XP_017969387.1; XP_017969388.1	343; 346; 356	Pfam	PF08498, PF08241; PF08498, PF08241; PF08241, PF08498	Sterol methyltransferase C-terminal, Methyltransferase domain; Sterol methyltransferase C-terminal, Methyltransferase domain; Methyltransferase domain, Sterol methyltransferase C-terminal	IPR013705, IPR013216; IPR013705, IPR013216; IPR013216, IPR013705	Sterol methyltransferase C-terminal, Methyltransferase type 11; Sterol methyltransferase C-terminal, Methyltransferase type 11; Methyltransferase type 11, Sterol methyltransferase C-terminal
hsd_id_Theobroma_cacao_1350	XP_007028785.2; XP_017970338.1	103; 128	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1351	XP_007028812.2; XP_007040980.2	501; 516	Pfam	PF01697; PF01697	Glycosyltransferase family 92; Glycosyltransferase family 92	IPR008166; IPR008166	Glycosyltransferase family 92; Glycosyltransferase family 92
hsd_id_Theobroma_cacao_1352	XP_007028906.1; XP_017972192.1; XP_017971691.1	151; 137; 136	Pfam	PF03311; PF03311; PF03311	Cornichon protein; Cornichon protein; Cornichon protein	IPR003377; IPR003377; IPR003377	Cornichon; Cornichon; Cornichon
hsd_id_Theobroma_cacao_1353	XP_007028926.2; XP_007028927.2; XP_017976606.1; XP_017976477.1	516; 507; 516; 521	Pfam	PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_1354	XP_007028937.1; XP_017976180.1; XP_017976620.1	233; 233; 233	Pfam	PF01159, PF03868; PF01159, PF03868; PF01159, PF03868	Ribosomal protein L6e, Ribosomal protein L6, N-terminal domain; Ribosomal protein L6e, Ribosomal protein L6, N-terminal domain; Ribosomal protein L6e, Ribosomal protein L6, N-terminal domain	IPR000915, IPR005568; IPR000915, IPR005568; IPR000915, IPR005568	60S ribosomal protein L6E, Ribosomal protein L6, N-terminal; 60S ribosomal protein L6E, Ribosomal protein L6, N-terminal; 60S ribosomal protein L6E, Ribosomal protein L6, N-terminal
hsd_id_Theobroma_cacao_1355	XP_007028981.1; XP_017983881.1	292; 299	Pfam	PF00013, PF00642; PF00642, PF00013	KH domain, Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar), KH domain	IPR004088, IPR000571; IPR000571, IPR004088	K Homology domain, type 1, Zinc finger, CCCH-type; Zinc finger, CCCH-type, K Homology domain, type 1
hsd_id_Theobroma_cacao_1356	XP_007028983.2; XP_007028984.2	163; 166	Pfam	PF03760; PF03760	Late embryogenesis abundant (LEA) group 1; Late embryogenesis abundant (LEA) group 1	IPR005513; IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup; Late embryogenesis abundant protein, LEA_1 subgroup
hsd_id_Theobroma_cacao_1357	XP_007029023.2; XP_017971696.1; XP_007051109.2; XP_017983684.1; XP_007035738.1; XP_017984628.1; XP_007034642.2; XP_017976843.1; XP_017977119.1	650; 632; 549; 460; 453; 602; 456; 464; 419	Pfam	PF13839, PF14416; PF14416, PF13839; PF13839, PF14416; PF14416, PF13839; PF14416, PF13839; PF13839, PF14416; PF14416, PF13839; PF14416, PF13839; PF14416, PF13839	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p	IPR026057, IPR025846; IPR025846, IPR026057; IPR026057, IPR025846; IPR025846, IPR026057; IPR025846, IPR026057; IPR026057, IPR025846; IPR025846, IPR026057; IPR025846, IPR026057; IPR025846, IPR026057	PC-Esterase, PMR5 N-terminal domain; PMR5 N-terminal domain, PC-Esterase; PC-Esterase, PMR5 N-terminal domain; PMR5 N-terminal domain, PC-Esterase; PMR5 N-terminal domain, PC-Esterase; PC-Esterase, PMR5 N-terminal domain; PMR5 N-terminal domain, PC-Esterase; PMR5 N-terminal domain, PC-Esterase; PMR5 N-terminal domain, PC-Esterase
hsd_id_Theobroma_cacao_1358	XP_007029058.2; XP_007044279.2	238; 238	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1359	XP_007029101.2; XP_017982504.1; XP_017972663.1	602; 584; 584	Pfam	PF03015, PF07993; PF07993, PF03015; PF07993, PF03015	Male sterility protein, Male sterility protein; Male sterility protein, Male sterility protein; Male sterility protein, Male sterility protein	IPR033640, IPR013120; IPR013120, IPR033640; IPR013120, IPR033640	Fatty acyl-CoA reductase, C-terminal, Fatty acyl-coenzyme A reductase, NAD-binding domain; Fatty acyl-coenzyme A reductase, NAD-binding domain, Fatty acyl-CoA reductase, C-terminal; Fatty acyl-coenzyme A reductase, NAD-binding domain, Fatty acyl-CoA reductase, C-terminal
hsd_id_Theobroma_cacao_1360	XP_007029144.2; XP_007029145.1	171; 172	Pfam	PF00582; PF00582	Universal stress protein family; Universal stress protein family	IPR006016; IPR006016	UspA; UspA
hsd_id_Theobroma_cacao_1361	XP_007029146.2; XP_017982897.1; XP_017984829.1	1114; 1117; 1143	Pfam	PF00917, PF00443, PF14533, PF12436; PF12436, PF00917, PF14533, PF00443; PF14533, PF00917, PF00443, PF12436	MATH domain, Ubiquitin carboxyl-terminal hydrolase, Ubiquitin-specific protease C-terminal, ICP0-binding domain of Ubiquitin-specific protease 7; ICP0-binding domain of Ubiquitin-specific protease 7, MATH domain, Ubiquitin-specific protease C-terminal, Ubiquitin carboxyl-terminal hydrolase; Ubiquitin-specific protease C-terminal, MATH domain, Ubiquitin carboxyl-terminal hydrolase, ICP0-binding domain of Ubiquitin-specific protease 7	IPR002083, IPR001394, IPR029346, IPR024729; IPR024729, IPR002083, IPR029346, IPR001394; IPR029346, IPR002083, IPR001394, IPR024729	MATH/TRAF domain, Peptidase C19, ubiquitin carboxyl-terminal hydrolase, Ubiquitin carboxyl-terminal hydrolase, C-terminal, Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain; Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain, MATH/TRAF domain, Ubiquitin carboxyl-terminal hydrolase, C-terminal, Peptidase C19, ubiquitin carboxyl-terminal hydrolase; Ubiquitin carboxyl-terminal hydrolase, C-terminal, MATH/TRAF domain, Peptidase C19, ubiquitin carboxyl-terminal hydrolase, Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain
hsd_id_Theobroma_cacao_1362	XP_007029155.2; XP_017976486.1; XP_017974845.1; XP_017974825.1	230; 313; 330; 282	Pfam	PF00685; PF00685; PF00685; PF00685	Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain	IPR000863; IPR000863; IPR000863; IPR000863	Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain; Sulfotransferase domain
hsd_id_Theobroma_cacao_1363	XP_007029168.1; XP_017978457.1; XP_007038744.1	445; 437; 455	Pfam	PF12894, PF00400; PF12894, PF00400; PF00400, PF12894	Anaphase-promoting complex subunit 4 WD40 domain, WD domain, G-beta repeat; Anaphase-promoting complex subunit 4 WD40 domain, WD domain, G-beta repeat; WD domain, G-beta repeat, Anaphase-promoting complex subunit 4 WD40 domain	IPR024977, IPR001680; IPR024977, IPR001680; IPR001680, IPR024977	Anaphase-promoting complex subunit 4, WD40 domain, WD40 repeat; Anaphase-promoting complex subunit 4, WD40 domain, WD40 repeat; WD40 repeat, Anaphase-promoting complex subunit 4, WD40 domain
hsd_id_Theobroma_cacao_1364	XP_007029186.2; XP_017974084.1	382; 382	Pfam	PF13419; PF13419	Haloacid dehalogenase-like hydrolase; Haloacid dehalogenase-like hydrolase	IPR041492; IPR041492	Haloacid dehalogenase-like hydrolase; Haloacid dehalogenase-like hydrolase
hsd_id_Theobroma_cacao_1365	XP_007029187.1; XP_007029190.2	148; 143	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1366	XP_007029191.2; XP_017974910.1; XP_007031136.2	423; 423; 427	Pfam	PF00262; PF00262; PF00262	Calreticulin family; Calreticulin family; Calreticulin family	IPR001580; IPR001580; IPR001580	Calreticulin/calnexin; Calreticulin/calnexin; Calreticulin/calnexin
hsd_id_Theobroma_cacao_1367	XP_007029193.1; XP_007052415.1	132; 126	Pfam	PF00550; PF00550	Phosphopantetheine attachment site; Phosphopantetheine attachment site	IPR009081; IPR009081	Phosphopantetheine binding ACP domain; Phosphopantetheine binding ACP domain
hsd_id_Theobroma_cacao_1368	XP_007029235.1; XP_007036236.1	170; 171	Pfam	PF01592; PF01592	NifU-like N terminal domain; NifU-like N terminal domain	IPR002871; IPR002871	NIF system FeS cluster assembly, NifU, N-terminal; NIF system FeS cluster assembly, NifU, N-terminal
hsd_id_Theobroma_cacao_1369	XP_007029243.2; XP_007052468.1	694; 692	Pfam	PF13522, PF01380; PF01380, PF13522	Glutamine amidotransferase domain, SIS domain; SIS domain, Glutamine amidotransferase domain	-, IPR001347; IPR001347, -	-, SIS domain; SIS domain, -
hsd_id_Theobroma_cacao_1370	XP_007029252.1; XP_017972564.1; XP_007032701.1	279; 279; 288	Pfam	PF00364; PF00364; PF00364	Biotin-requiring enzyme; Biotin-requiring enzyme; Biotin-requiring enzyme	IPR000089; IPR000089; IPR000089	Biotin/lipoyl attachment; Biotin/lipoyl attachment; Biotin/lipoyl attachment
hsd_id_Theobroma_cacao_1371	XP_007029276.2; XP_007033987.1	489; 488	Pfam	PF14543, PF14541; PF14543, PF14541	Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal; Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal	IPR032861, IPR032799; IPR032861, IPR032799	Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal; Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal
hsd_id_Theobroma_cacao_1372	XP_007029291.2; XP_017974190.1	495; 499	Pfam	PF00450; PF00450	Serine carboxypeptidase; Serine carboxypeptidase	IPR001563; IPR001563	Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase
hsd_id_Theobroma_cacao_1373	XP_007029298.2; XP_017975231.1; XP_017977738.1	526; 540; 509	Pfam	PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_1374	XP_007029305.2; XP_017976495.1; XP_007029334.2; XP_017976496.1; XP_017984285.1; XP_017984284.1	347; 347; 347; 248; 233; 145	Pfam	PF02365; PF02365; PF02365; PF02365; PF02365; PF02365	No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein	IPR003441; IPR003441; IPR003441; IPR003441; IPR003441; IPR003441	NAC domain; NAC domain; NAC domain; NAC domain; NAC domain; NAC domain
hsd_id_Theobroma_cacao_1375	XP_007029307.1; XP_007047521.1	146; 146	Pfam	PF16906, PF00467; PF00467, PF16906	Ribosomal proteins L26 eukaryotic, L24P archaeal, KOW motif; KOW motif, Ribosomal proteins L26 eukaryotic, L24P archaeal	IPR005756, IPR005824; IPR005824, IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal, KOW; KOW, Ribosomal protein L26/L24, eukaryotic/archaeal
hsd_id_Theobroma_cacao_1376	XP_007029356.2; XP_007043321.2; XP_007031922.2; XP_017973142.1; XP_017973243.1	689; 694; 670; 668; 664	Pfam	PF03169; PF03169; PF03169; PF03169; PF03169	OPT oligopeptide transporter protein; OPT oligopeptide transporter protein; OPT oligopeptide transporter protein; OPT oligopeptide transporter protein; OPT oligopeptide transporter protein	IPR004813; IPR004813; IPR004813; IPR004813; IPR004813	Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily; Oligopeptide transporter, OPT superfamily
hsd_id_Theobroma_cacao_1377	XP_007029360.2; XP_007029361.1	195; 198	Pfam	PF00197; PF00197	Trypsin and protease inhibitor; Trypsin and protease inhibitor	IPR002160; IPR002160	Proteinase inhibitor I3, Kunitz legume; Proteinase inhibitor I3, Kunitz legume
hsd_id_Theobroma_cacao_1378	XP_007029381.1; XP_007049544.1	217; 218	Pfam	PF02605; PF02605	Photosystem I reaction centre subunit XI; Photosystem I reaction centre subunit XI	IPR003757; IPR003757	Photosystem I PsaL, reaction centre subunit XI; Photosystem I PsaL, reaction centre subunit XI
hsd_id_Theobroma_cacao_1379	XP_007029395.1; XP_017975196.1	113; 124	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1380	XP_007029410.2; XP_007047281.2	363; 358	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1381	XP_007029462.2; XP_017976340.1; XP_017977842.1; XP_017977678.1	693; 693; 694; 696	Pfam	PF01031, PF02212, PF00350; PF02212, PF00350, PF01031; PF02212, PF00350, PF01031; PF00350, PF02212, PF01031	Dynamin central region, Dynamin GTPase effector domain, Dynamin family; Dynamin GTPase effector domain, Dynamin family, Dynamin central region; Dynamin GTPase effector domain, Dynamin family, Dynamin central region; Dynamin family, Dynamin GTPase effector domain, Dynamin central region	IPR000375, IPR003130, IPR045063; IPR003130, IPR045063, IPR000375; IPR003130, IPR045063, IPR000375; IPR045063, IPR003130, IPR000375	Dynamin stalk domain, Dynamin GTPase effector, Dynamin, N-terminal; Dynamin GTPase effector, Dynamin, N-terminal, Dynamin stalk domain; Dynamin GTPase effector, Dynamin, N-terminal, Dynamin stalk domain; Dynamin, N-terminal, Dynamin GTPase effector, Dynamin stalk domain
hsd_id_Theobroma_cacao_1382	XP_007029487.2; XP_017976761.1; XP_017976762.1; XP_017970668.1; XP_017974900.1; XP_017974901.1; XP_007035692.1; XP_007035691.1; XP_017974899.1; XP_007035693.2; XP_007035697.1; XP_017974898.1; XP_007035700.2; XP_007035695.2; XP_007051017.1; XP_007035688.2; XP_007035686.2; XP_007035687.1	159; 159; 159; 159; 159; 159; 159; 158; 160; 160; 160; 160; 160; 160; 159; 197; 160; 160	Pfam	PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407; PF00407	Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family	IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916; IPR000916	Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein
hsd_id_Theobroma_cacao_1383	XP_007029545.2; XP_007044675.1; XP_007051216.1; XP_007031214.1; XP_007031496.1; XP_017983776.1; XP_017969640.1; XP_007034914.1; XP_017971660.1	193; 181; 181; 181; 181; 182; 189; 183; 250	Pfam	PF00025; PF00025; PF00025; PF00025; PF00025; PF00025; PF00025; PF00025; PF00025	ADP-ribosylation factor family; ADP-ribosylation factor family; ADP-ribosylation factor family; ADP-ribosylation factor family; ADP-ribosylation factor family; ADP-ribosylation factor family; ADP-ribosylation factor family; ADP-ribosylation factor family; ADP-ribosylation factor family	IPR006689; IPR006689; IPR006689; IPR006689; IPR006689; IPR006689; IPR006689; IPR006689; IPR006689	Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type
hsd_id_Theobroma_cacao_1384	XP_007029574.2; XP_007046917.2	650; 628	Pfam	PF12037, PF00004; PF12037, PF00004	Domain of unknown function (DUF3523), ATPase family associated with various cellular activities (AAA); Domain of unknown function (DUF3523), ATPase family associated with various cellular activities (AAA)	IPR021911, IPR003959; IPR021911, IPR003959	ATPase family AAA domain-containing protein 3, N-terminal, ATPase, AAA-type, core; ATPase family AAA domain-containing protein 3, N-terminal, ATPase, AAA-type, core
hsd_id_Theobroma_cacao_1385	XP_007029588.1; XP_007012143.2	180; 194	Pfam	PF01981; PF01981	Peptidyl-tRNA hydrolase PTH2; Peptidyl-tRNA hydrolase PTH2	IPR002833; IPR002833	Peptidyl-tRNA hydrolase, PTH2; Peptidyl-tRNA hydrolase, PTH2
hsd_id_Theobroma_cacao_1386	XP_007029596.2; XP_007040666.2; XP_007045509.2; XP_007030054.2	328; 282; 311; 269	Pfam	PF00076; PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_1387	XP_007029600.2; XP_007040664.1; XP_017975144.1	280; 273; 271	Pfam	PF05739, PF14523; PF05739, PF14523; PF05739, PF14523	SNARE domain, Syntaxin-like protein; SNARE domain, Syntaxin-like protein; SNARE domain, Syntaxin-like protein	IPR000727, IPR006011; IPR000727, IPR006011; IPR000727, IPR006011	Target SNARE coiled-coil homology domain, Syntaxin, N-terminal domain; Target SNARE coiled-coil homology domain, Syntaxin, N-terminal domain; Target SNARE coiled-coil homology domain, Syntaxin, N-terminal domain
hsd_id_Theobroma_cacao_1388	XP_007029610.2; XP_017976076.1; XP_007029615.1	157; 159; 159	Pfam	PF00407; PF00407; PF00407	Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family	IPR000916; IPR000916; IPR000916	Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein
hsd_id_Theobroma_cacao_1389	XP_007029620.1; XP_007040636.2	310; 369	Pfam	PF05770, PF17927; PF05770, PF17927	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain, Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain; Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain, Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain	IPR040464, IPR041429; IPR040464, IPR041429	Inositol 1,3,4-trisphosphate 5/6-kinase, ATP-grasp domain, Inositol-tetrakisphosphate 1-kinase, N-terminal; Inositol 1,3,4-trisphosphate 5/6-kinase, ATP-grasp domain, Inositol-tetrakisphosphate 1-kinase, N-terminal
hsd_id_Theobroma_cacao_1390	XP_007029678.2; XP_007039484.2	185; 170	Pfam	PF06094; PF06094	Gamma-glutamyl cyclotransferase, AIG2-like; Gamma-glutamyl cyclotransferase, AIG2-like	IPR009288; IPR009288	Gamma-glutamylcyclotransferase, AIG2-like domain; Gamma-glutamylcyclotransferase, AIG2-like domain
hsd_id_Theobroma_cacao_1391	XP_007029686.2; XP_017977918.1	375; 426	Pfam	PF08240, PF00107; PF00107, PF08240	Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain	IPR013154, IPR013149; IPR013149, IPR013154	Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, C-terminal, Alcohol dehydrogenase, N-terminal
hsd_id_Theobroma_cacao_1392	XP_007029697.2; XP_007037286.2; XP_017971345.1	460; 439; 522	Pfam	PF01344; PF01344; PF01344	Kelch motif; Kelch motif; Kelch motif	IPR006652; IPR006652; IPR006652	Kelch repeat type 1; Kelch repeat type 1; Kelch repeat type 1
hsd_id_Theobroma_cacao_1393	XP_007029723.2; XP_007047440.2	412; 497	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1394	XP_007029751.2; XP_007029754.2; XP_017976660.1	127; 127; 127	Pfam	PF04081; PF04081; PF04081	DNA polymerase delta, subunit 4; DNA polymerase delta, subunit 4; DNA polymerase delta, subunit 4	IPR007218; IPR007218; IPR007218	DNA polymerase delta, subunit 4; DNA polymerase delta, subunit 4; DNA polymerase delta, subunit 4
hsd_id_Theobroma_cacao_1395	XP_007029752.2; XP_017975989.1; XP_017977927.1; XP_017977828.1; XP_017976122.1; XP_017976758.1; XP_017976507.1	558; 522; 513; 513; 520; 512; 511	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_1396	XP_007029790.2; XP_017976074.1; XP_017977759.1; XP_017977799.1	457; 452; 454; 504	Pfam	PF02458; PF02458; PF02458; PF02458	Transferase family; Transferase family; Transferase family; Transferase family	IPR003480; IPR003480; IPR003480; IPR003480	Transferase; Transferase; Transferase; Transferase
hsd_id_Theobroma_cacao_1397	XP_007029796.1; XP_017976055.1	311; 303	Pfam	PF01026; PF01026	TatD related DNase; TatD related DNase	IPR001130; IPR001130	TatD family; TatD family
hsd_id_Theobroma_cacao_1398	XP_007029817.2; XP_007047864.1	627; 602	Pfam	PF12070; PF12070	Protein SCAI; Protein SCAI	IPR022709; IPR022709	Protein SCAI; Protein SCAI
hsd_id_Theobroma_cacao_1399	XP_007029827.2; XP_017972293.1	708; 708	Pfam	PF00924; PF00924	Mechanosensitive ion channel; Mechanosensitive ion channel	IPR006685; IPR006685	Mechanosensitive ion channel MscS; Mechanosensitive ion channel MscS
hsd_id_Theobroma_cacao_1400	XP_007029834.2; XP_007040929.2	382; 364	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1401	XP_007029848.1; XP_007040912.2	558; 610	Pfam	PF06813; PF06813	Nodulin-like; Nodulin-like	IPR010658; IPR010658	Nodulin-like; Nodulin-like
hsd_id_Theobroma_cacao_1402	XP_007029885.1; XP_017972510.1; XP_017972507.1; XP_017977081.1; XP_007048299.2	195; 204; 204; 201; 200	Pfam	PF00352; PF00352; PF00352; PF00352; PF00352	Transcription factor TFIID (or TATA-binding protein, TBP); Transcription factor TFIID (or TATA-binding protein, TBP); Transcription factor TFIID (or TATA-binding protein, TBP); Transcription factor TFIID (or TATA-binding protein, TBP); Transcription factor TFIID (or TATA-binding protein, TBP)	IPR000814; IPR000814; IPR000814; IPR000814; IPR000814	TATA-box binding protein; TATA-box binding protein; TATA-box binding protein; TATA-box binding protein; TATA-box binding protein
hsd_id_Theobroma_cacao_1403	XP_007029898.2; XP_007043545.2; XP_017970140.1; XP_007052337.2	320; 288; 293; 266	Pfam	PF04727; PF04727; PF04727; PF04727	ELMO/CED-12 family; ELMO/CED-12 family; ELMO/CED-12 family; ELMO/CED-12 family	IPR006816; IPR006816; IPR006816; IPR006816	ELMO domain; ELMO domain; ELMO domain; ELMO domain
hsd_id_Theobroma_cacao_1404	XP_007029901.1; XP_017976696.1; XP_017976260.1; XP_007029904.2; XP_007029905.2; XP_017977496.1	485; 480; 488; 486; 486; 489	Pfam	PF01554; PF01554; PF01554; PF01554; PF01554; PF01554	MatE; MatE; MatE; MatE; MatE; MatE	IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528	Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein
hsd_id_Theobroma_cacao_1405	XP_007029929.1; XP_007033723.2; XP_007030649.2; XP_017974671.1; XP_017975971.1; XP_017984314.1	384; 402; 324; 325; 323; 371	Pfam	PF00291; PF00291; PF00291; PF00291; PF00291; PF00291	Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme	IPR001926; IPR001926; IPR001926; IPR001926; IPR001926; IPR001926	Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme; Pyridoxal-phosphate dependent enzyme
hsd_id_Theobroma_cacao_1406	XP_007029936.2; XP_017976526.1; XP_017976525.1	433; 434; 455	Pfam	PF00561; PF00561; PF00561	alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR000073; IPR000073; IPR000073	Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1
hsd_id_Theobroma_cacao_1407	XP_007029985.2; XP_017977091.1	640; 636	Pfam	PF13520, PF13906; PF13520, PF13906	Amino acid permease, C-terminus of AA_permease; Amino acid permease, C-terminus of AA_permease	IPR002293, IPR029485; IPR002293, IPR029485	Amino acid/polyamine transporter I, Cationic amino acid transporter, C-terminal; Amino acid/polyamine transporter I, Cationic amino acid transporter, C-terminal
hsd_id_Theobroma_cacao_1408	XP_007030006.1; XP_007046200.1; XP_007037261.1	152; 152; 152	Pfam	PF00179; PF00179; PF00179	Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme	IPR000608; IPR000608; IPR000608	Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2
hsd_id_Theobroma_cacao_1409	XP_007030045.2; XP_007030046.2; XP_017972628.1; XP_017976542.1	196; 199; 203; 164	Pfam	PF02298; PF02298; PF02298; PF02298	Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain	IPR003245; IPR003245; IPR003245; IPR003245	Phytocyanin domain; Phytocyanin domain; Phytocyanin domain; Phytocyanin domain
hsd_id_Theobroma_cacao_1410	XP_007030068.2; XP_017976269.1; XP_017976112.1; XP_007030070.2	478; 465; 473; 492	Pfam	PF03016; PF03016; PF03016; PF03016	Exostosin family; Exostosin family; Exostosin family; Exostosin family	IPR040911; IPR040911; IPR040911; IPR040911	Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain
hsd_id_Theobroma_cacao_1411	XP_007030084.2; XP_017977228.1; XP_017977229.1; XP_017979562.1; XP_017979632.1; XP_017980697.1	735; 733; 733; 744; 752; 741	Pfam	PF03552; PF03552; PF03552; PF03552; PF03552; PF03552	Cellulose synthase; Cellulose synthase; Cellulose synthase; Cellulose synthase; Cellulose synthase; Cellulose synthase	IPR005150; IPR005150; IPR005150; IPR005150; IPR005150; IPR005150	Cellulose synthase; Cellulose synthase; Cellulose synthase; Cellulose synthase; Cellulose synthase; Cellulose synthase
hsd_id_Theobroma_cacao_1412	XP_007030110.2; XP_007035449.2	532; 535	Pfam	PF01488, PF01487, PF08501, PF18317; PF18317, PF08501, PF01488, PF01487	Shikimate / quinate 5-dehydrogenase, Type I 3-dehydroquinase, Shikimate dehydrogenase substrate binding domain, Shikimate 5'-dehydrogenase C-terminal domain; Shikimate 5'-dehydrogenase C-terminal domain, Shikimate dehydrogenase substrate binding domain, Shikimate / quinate 5-dehydrogenase, Type I 3-dehydroquinase	IPR006151, IPR001381, IPR013708, IPR041121; IPR041121, IPR013708, IPR006151, IPR001381	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase, 3-dehydroquinate dehydratase type I, Shikimate dehydrogenase substrate binding, N-terminal, SDH, C-terminal; SDH, C-terminal, Shikimate dehydrogenase substrate binding, N-terminal, Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase, 3-dehydroquinate dehydratase type I
hsd_id_Theobroma_cacao_1413	XP_007030115.1; XP_017980764.1	148; 148	Pfam	PF06179; PF06179	Surfeit locus protein 5 subunit 22 of Mediator complex; Surfeit locus protein 5 subunit 22 of Mediator complex	IPR009332; IPR009332	Mediator of RNA polymerase II transcription subunit 22; Mediator of RNA polymerase II transcription subunit 22
hsd_id_Theobroma_cacao_1414	XP_007030139.1; XP_017973204.1	299; 317	Pfam	PF10160; PF10160	Predicted membrane protein; Predicted membrane protein	IPR018781; IPR018781	Transmembrane protein TPRA1/CAND2/CAND8; Transmembrane protein TPRA1/CAND2/CAND8
hsd_id_Theobroma_cacao_1415	XP_007030193.2; XP_017976349.1; XP_017976673.1; XP_007030207.2; XP_017976709.1; XP_017976674.1	152; 152; 137; 152; 152; 211	Pfam	; ; ; ; ; 	; ; ; ; ; 	; ; ; ; ; 	; ; ; ; ; 
hsd_id_Theobroma_cacao_1416	XP_007030215.1; XP_007037394.2	294; 278	Pfam	PF00085; PF00085	Thioredoxin; Thioredoxin	IPR013766; IPR013766	Thioredoxin domain; Thioredoxin domain
hsd_id_Theobroma_cacao_1417	XP_007030240.1; XP_017976742.1; XP_007050795.2; XP_007038075.2; XP_007043874.1; XP_007038077.1; XP_017972712.1	301; 254; 306; 280; 287; 289; 285	Pfam	PF03083; PF03083; PF03083; PF03083; PF03083; PF03083; PF03083	Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange	IPR004316; IPR004316; IPR004316; IPR004316; IPR004316; IPR004316; IPR004316	SWEET sugar transporter; SWEET sugar transporter; SWEET sugar transporter; SWEET sugar transporter; SWEET sugar transporter; SWEET sugar transporter; SWEET sugar transporter
hsd_id_Theobroma_cacao_1418	XP_007030243.2; XP_007030244.2; XP_017970285.1; XP_017970297.1; XP_017972027.1; XP_007050140.2	489; 489; 517; 517; 495; 488	Pfam	PF00282; PF00282; PF00282; PF00282; PF00282; PF00282	Pyridoxal-dependent decarboxylase conserved domain; Pyridoxal-dependent decarboxylase conserved domain; Pyridoxal-dependent decarboxylase conserved domain; Pyridoxal-dependent decarboxylase conserved domain; Pyridoxal-dependent decarboxylase conserved domain; Pyridoxal-dependent decarboxylase conserved domain	IPR002129; IPR002129; IPR002129; IPR002129; IPR002129; IPR002129	Pyridoxal phosphate-dependent decarboxylase; Pyridoxal phosphate-dependent decarboxylase; Pyridoxal phosphate-dependent decarboxylase; Pyridoxal phosphate-dependent decarboxylase; Pyridoxal phosphate-dependent decarboxylase; Pyridoxal phosphate-dependent decarboxylase
hsd_id_Theobroma_cacao_1419	XP_007030265.1; XP_017976277.1; XP_017977493.1; XP_007030273.2; XP_017976306.1; XP_017976679.1; XP_007030280.1; XP_017976685.1; XP_007030284.2; XP_017976273.1; XP_017976280.1; XP_007030289.1; XP_017976680.1; XP_017976226.1; XP_017976216.1; XP_007030282.2; XP_017976689.1; XP_007030283.2; XP_017978466.1; XP_007051335.1; XP_007031299.2; XP_017978216.1; XP_007044465.2; XP_017973307.1	221; 225; 224; 224; 226; 225; 226; 225; 226; 226; 226; 221; 220; 225; 225; 225; 235; 157; 221; 219; 217; 208; 218; 221	Pfam	PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190; PF00190	Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin; Cupin	IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045; IPR006045	Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1; Cupin 1
hsd_id_Theobroma_cacao_1420	XP_007030301.2; XP_007030305.2; XP_017977899.1	370; 367; 367	Pfam	PF00657; PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_1421	XP_007030315.1; XP_007050111.2; XP_017980262.1	109; 107; 134	Pfam	PF05899; PF05899; PF05899	Protein of unknown function (DUF861); Protein of unknown function (DUF861); Protein of unknown function (DUF861)	IPR008579; IPR008579; IPR008579	(S)-ureidoglycine aminohydrolase, cupin-3 domain; (S)-ureidoglycine aminohydrolase, cupin-3 domain; (S)-ureidoglycine aminohydrolase, cupin-3 domain
hsd_id_Theobroma_cacao_1422	XP_007030327.2; XP_017969917.1	606; 559	Pfam	PF03070; PF03070	TENA/THI-4/PQQC family; TENA/THI-4/PQQC family	IPR004305; IPR004305	Thiaminase-2/PQQC; Thiaminase-2/PQQC
hsd_id_Theobroma_cacao_1423	XP_007030336.2; XP_017976560.1	212; 219	Pfam	PF01612; PF01612	3'-5' exonuclease; 3'-5' exonuclease	IPR002562; IPR002562	3'-5' exonuclease domain; 3'-5' exonuclease domain
hsd_id_Theobroma_cacao_1424	XP_007030349.2; XP_017969567.1	600; 568	Pfam	PF06101; PF06101	Vacuolar protein sorting-associated protein 62; Vacuolar protein sorting-associated protein 62	IPR009291; IPR009291	Vacuolar protein sorting-associated protein 62; Vacuolar protein sorting-associated protein 62
hsd_id_Theobroma_cacao_1425	XP_007030357.2; XP_007030367.2	818; 802	Pfam	PF17120, PF03107; PF03107, PF17120	Zinc-ribbon, C4HC2 type, C1 domain; C1 domain, Zinc-ribbon, C4HC2 type	-, IPR004146; IPR004146, -	-, DC1; DC1, -
hsd_id_Theobroma_cacao_1426	XP_007030388.2; XP_017975459.1; XP_017979438.1	658; 649; 610	Pfam	PF11904; PF11904; PF11904	GPCR-chaperone; GPCR-chaperone; GPCR-chaperone	IPR021832; IPR021832; IPR021832	Ankyrin repeat domain-containing protein 13; Ankyrin repeat domain-containing protein 13; Ankyrin repeat domain-containing protein 13
hsd_id_Theobroma_cacao_1427	XP_007030432.2; XP_007035108.2	274; 270	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1428	XP_007030469.1; XP_007035064.2; XP_017975215.1; XP_007035057.2; XP_007035066.2; XP_017975214.1; XP_007035062.2; XP_017974607.1; XP_017975216.1; XP_007035068.2; XP_007099680.2; XP_017984037.1	373; 369; 374; 371; 371; 386; 374; 381; 368; 371; 386; 366	Pfam	PF03171, PF14226; PF14226, PF03171; PF14226, PF03171; PF03171, PF14226; PF03171, PF14226; PF03171, PF14226; PF03171, PF14226; PF14226, PF03171; PF14226, PF03171; PF14226, PF03171; PF03171, PF14226; PF03171, PF14226	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR044861, IPR026992; IPR026992, IPR044861; IPR026992, IPR044861; IPR044861, IPR026992; IPR044861, IPR026992; IPR044861, IPR026992; IPR044861, IPR026992; IPR026992, IPR044861; IPR026992, IPR044861; IPR026992, IPR044861; IPR044861, IPR026992; IPR044861, IPR026992	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_1429	XP_007030495.1; XP_007039179.1; XP_017969340.1	225; 189; 213	Pfam	PF05030; PF05030; PF05030	SSXT protein (N-terminal region); SSXT protein (N-terminal region); SSXT protein (N-terminal region)	IPR007726; IPR007726; IPR007726	SS18, N-terminal; SS18, N-terminal; SS18, N-terminal
hsd_id_Theobroma_cacao_1430	XP_007030510.2; XP_017976351.1	582; 600	Pfam	PF12796, PF13962; PF12796, PF13962	Ankyrin repeats (3 copies), Domain of unknown function; Ankyrin repeats (3 copies), Domain of unknown function	IPR020683, IPR026961; IPR020683, IPR026961	Ankyrin repeat-containing domain, PGG domain; Ankyrin repeat-containing domain, PGG domain
hsd_id_Theobroma_cacao_1431	XP_007030523.1; XP_017976743.1; XP_007030529.1; XP_007030528.1; XP_007030524.2; XP_017976276.1	173; 173; 190; 188; 201; 222	Pfam	PF04970; PF04970; PF04970; PF04970; PF04970; PF04970	Lecithin retinol acyltransferase; Lecithin retinol acyltransferase; Lecithin retinol acyltransferase; Lecithin retinol acyltransferase; Lecithin retinol acyltransferase; Lecithin retinol acyltransferase	IPR007053; IPR007053; IPR007053; IPR007053; IPR007053; IPR007053	LRAT domain; LRAT domain; LRAT domain; LRAT domain; LRAT domain; LRAT domain
hsd_id_Theobroma_cacao_1432	XP_007030527.2; XP_017973185.1; XP_007039034.2; XP_007039035.2	357; 346; 354; 366	Pfam	PF01764; PF01764; PF01764; PF01764	Lipase (class 3); Lipase (class 3); Lipase (class 3); Lipase (class 3)	IPR002921; IPR002921; IPR002921; IPR002921	Fungal lipase-like domain; Fungal lipase-like domain; Fungal lipase-like domain; Fungal lipase-like domain
hsd_id_Theobroma_cacao_1433	XP_007030535.2; XP_017982724.1; XP_017977641.1; XP_007034995.2	361; 458; 487; 400	Pfam	PF06886; PF06886; PF06886; PF06886	Targeting protein for Xklp2 (TPX2) domain; Targeting protein for Xklp2 (TPX2) domain; Targeting protein for Xklp2 (TPX2) domain; Targeting protein for Xklp2 (TPX2) domain	IPR027329; IPR027329; IPR027329; IPR027329	TPX2, C-terminal; TPX2, C-terminal; TPX2, C-terminal; TPX2, C-terminal
hsd_id_Theobroma_cacao_1434	XP_007030547.1; XP_007050407.2; XP_017974771.1	460; 429; 424	Pfam	PF13923; PF13923; PF13923	Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger)	-; -; -	-; -; -
hsd_id_Theobroma_cacao_1435	XP_007030571.1; XP_007038102.2	345; 348	Pfam	PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_1436	XP_007030588.2; XP_017977787.1; XP_017976106.1; XP_017974148.1; XP_017975264.1	1001; 1001; 1019; 1018; 1018	Pfam	PF00702, PF00689, PF00122, PF00690; PF00690, PF00689, PF00702, PF00122; PF00689, PF00702, PF00122, PF00690; PF00689, PF00122, PF00690, PF00702; PF00122, PF00702, PF00689, PF00690	haloacid dehalogenase-like hydrolase, Cation transporting ATPase, C-terminus, E1-E2 ATPase, Cation transporter/ATPase, N-terminus; Cation transporter/ATPase, N-terminus, Cation transporting ATPase, C-terminus, haloacid dehalogenase-like hydrolase, E1-E2 ATPase; Cation transporting ATPase, C-terminus, haloacid dehalogenase-like hydrolase, E1-E2 ATPase, Cation transporter/ATPase, N-terminus; Cation transporting ATPase, C-terminus, E1-E2 ATPase, Cation transporter/ATPase, N-terminus, haloacid dehalogenase-like hydrolase; E1-E2 ATPase, haloacid dehalogenase-like hydrolase, Cation transporting ATPase, C-terminus, Cation transporter/ATPase, N-terminus	-, IPR006068, -, IPR004014; IPR004014, IPR006068, -, -; IPR006068, -, -, IPR004014; IPR006068, -, IPR004014, -; -, -, IPR006068, IPR004014	-, Cation-transporting P-type ATPase, C-terminal, -, Cation-transporting P-type ATPase, N-terminal; Cation-transporting P-type ATPase, N-terminal, Cation-transporting P-type ATPase, C-terminal, -, -; Cation-transporting P-type ATPase, C-terminal, -, -, Cation-transporting P-type ATPase, N-terminal; Cation-transporting P-type ATPase, C-terminal, -, Cation-transporting P-type ATPase, N-terminal, -; -, -, Cation-transporting P-type ATPase, C-terminal, Cation-transporting P-type ATPase, N-terminal
hsd_id_Theobroma_cacao_1437	XP_007030594.1; XP_007030596.2; XP_017976868.1; XP_017976271.1; XP_017976869.1; XP_007030598.1; XP_007034873.2; XP_017974893.1; XP_017974729.1; XP_007034105.2; XP_017974733.1	350; 350; 351; 350; 350; 350; 355; 399; 344; 344; 344	Pfam	PF00248; PF00248; PF00248; PF00248; PF00248; PF00248; PF00248; PF00248; PF00248; PF00248; PF00248	Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family	IPR023210; IPR023210; IPR023210; IPR023210; IPR023210; IPR023210; IPR023210; IPR023210; IPR023210; IPR023210; IPR023210	NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain
hsd_id_Theobroma_cacao_1438	XP_007030603.2; XP_007045069.2	281; 260	Pfam	PF06026; PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A); Ribose 5-phosphate isomerase A (phosphoriboisomerase A)	IPR004788; IPR004788	Ribose 5-phosphate isomerase, type A; Ribose 5-phosphate isomerase, type A
hsd_id_Theobroma_cacao_1439	XP_007030607.2; XP_017985286.1; XP_017981065.1; XP_007027628.1	660; 569; 617; 574	Pfam	PF13837; PF13837; PF13837; PF13837	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR044822; IPR044822; IPR044822; IPR044822	Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4
hsd_id_Theobroma_cacao_1440	XP_007030608.1; XP_017969604.1; XP_017976600.1; XP_017984007.1	620; 612; 651; 576	Pfam	PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1441	XP_007030615.2; XP_007034835.1	261; 262	Pfam	PF01015; PF01015	Ribosomal S3Ae family; Ribosomal S3Ae family	IPR001593; IPR001593	Ribosomal protein S3Ae; Ribosomal protein S3Ae
hsd_id_Theobroma_cacao_1442	XP_007030623.2; XP_007050577.2	300; 310	Pfam	PF05910; PF05910	Plant protein of unknown function (DUF868); Plant protein of unknown function (DUF868)	IPR008586; IPR008586	Protein of unknown function DUF868, plant; Protein of unknown function DUF868, plant
hsd_id_Theobroma_cacao_1443	XP_007030636.1; XP_017974680.1	134; 134	Pfam	PF01282; PF01282	Ribosomal protein S24e; Ribosomal protein S24e	IPR001976; IPR001976	Ribosomal protein S24e; Ribosomal protein S24e
hsd_id_Theobroma_cacao_1444	XP_007030647.1; XP_007035905.2	109; 124	Pfam	PF07876; PF07876	Stress responsive A/B Barrel Domain; Stress responsive A/B Barrel Domain	IPR013097; IPR013097	Stress responsive alpha-beta barrel; Stress responsive alpha-beta barrel
hsd_id_Theobroma_cacao_1445	XP_007030728.2; XP_007047525.2; XP_017970400.1	208; 288; 136	Pfam	PF01583; PF01583; PF01583	Adenylylsulphate kinase; Adenylylsulphate kinase; Adenylylsulphate kinase	-; -; -	-; -; -
hsd_id_Theobroma_cacao_1446	XP_007030757.1; XP_007050734.1	344; 344	Pfam	PF07859; PF07859	alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR013094; IPR013094	Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3
hsd_id_Theobroma_cacao_1447	XP_007030778.2; XP_007030780.2; XP_017982887.1; XP_007035424.1; XP_017975501.1; XP_017976647.1	491; 486; 484; 479; 484; 471	Pfam	PF00083; PF00083; PF00083; PF00083; PF00083; PF00083	Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter; Sugar (and other) transporter	IPR005828; IPR005828; IPR005828; IPR005828; IPR005828; IPR005828	Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like
hsd_id_Theobroma_cacao_1448	XP_007030786.1; XP_007040320.2	297; 335	Pfam	PF00300; PF00300	Histidine phosphatase superfamily (branch 1); Histidine phosphatase superfamily (branch 1)	IPR013078; IPR013078	Histidine phosphatase superfamily, clade-1; Histidine phosphatase superfamily, clade-1
hsd_id_Theobroma_cacao_1449	XP_007030798.2; XP_017976309.1	330; 334	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1450	XP_007030817.2; XP_017976284.1; XP_007034721.2; XP_017977757.1; XP_017975993.1; XP_017977586.1	866; 861; 874; 843; 863; 775	Pfam	PF01477, PF00305; PF01477, PF00305; PF00305, PF01477; PF01477, PF00305; PF01477, PF00305; PF01477, PF00305	PLAT/LH2 domain, Lipoxygenase; PLAT/LH2 domain, Lipoxygenase; Lipoxygenase, PLAT/LH2 domain; PLAT/LH2 domain, Lipoxygenase; PLAT/LH2 domain, Lipoxygenase; PLAT/LH2 domain, Lipoxygenase	IPR001024, IPR013819; IPR001024, IPR013819; IPR013819, IPR001024; IPR001024, IPR013819; IPR001024, IPR013819; IPR001024, IPR013819	PLAT/LH2 domain, Lipoxygenase, C-terminal; PLAT/LH2 domain, Lipoxygenase, C-terminal; Lipoxygenase, C-terminal, PLAT/LH2 domain; PLAT/LH2 domain, Lipoxygenase, C-terminal; PLAT/LH2 domain, Lipoxygenase, C-terminal; PLAT/LH2 domain, Lipoxygenase, C-terminal
hsd_id_Theobroma_cacao_1451	XP_007030850.2; XP_017977621.1	568; 555	Pfam	PF01501; PF01501	Glycosyl transferase family 8; Glycosyl transferase family 8	IPR002495; IPR002495	Glycosyl transferase, family 8; Glycosyl transferase, family 8
hsd_id_Theobroma_cacao_1452	XP_007030854.2; XP_007050628.2	644; 641	Pfam	PF08356, PF00071, PF08355; PF08355, PF00071, PF08356	EF hand associated, Ras family, EF hand associated; EF hand associated, Ras family, EF hand associated	IPR013567, IPR001806, IPR013566; IPR013566, IPR001806, IPR013567	EF hand associated, type-2, Small GTPase, EF hand associated, type-1; EF hand associated, type-1, Small GTPase, EF hand associated, type-2
hsd_id_Theobroma_cacao_1453	XP_007030865.2; XP_007030866.2	432; 430	Pfam	PF01425; PF01425	Amidase; Amidase	IPR023631; IPR023631	Amidase signature domain; Amidase signature domain
hsd_id_Theobroma_cacao_1454	XP_007030878.2; XP_007099598.2; XP_017976243.1; XP_017976239.1	205; 228; 233; 224	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_1455	XP_007030900.1; XP_017974306.1; XP_017974600.1	424; 436; 456	Pfam	PF14541, PF14543; PF14541, PF14543; PF14543, PF14541	Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal	IPR032799, IPR032861; IPR032799, IPR032861; IPR032861, IPR032799	Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal
hsd_id_Theobroma_cacao_1456	XP_007030901.2; XP_007034609.2	503; 514	Pfam	PF00403; PF00403	Heavy-metal-associated domain; Heavy-metal-associated domain	IPR006121; IPR006121	Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA
hsd_id_Theobroma_cacao_1457	XP_007030927.2; XP_017971133.1	441; 406	Pfam	PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_1458	XP_007030948.1; XP_007032056.1; XP_007049127.1	86; 86; 86	Pfam	PF01667; PF01667; PF01667	Ribosomal protein S27; Ribosomal protein S27; Ribosomal protein S27	IPR000592; IPR000592; IPR000592	Ribosomal protein S27; Ribosomal protein S27; Ribosomal protein S27
hsd_id_Theobroma_cacao_1459	XP_007030973.2; XP_007035560.2	286; 290	Pfam	PF00168; PF00168	C2 domain; C2 domain	IPR000008; IPR000008	C2 domain; C2 domain
hsd_id_Theobroma_cacao_1460	XP_007030986.2; XP_007033684.1; XP_017979935.1; XP_007047509.2; XP_017971234.1	929; 933; 978; 916; 918	Pfam	PF02181; PF02181; PF02181; PF02181; PF02181	Formin Homology 2 Domain; Formin Homology 2 Domain; Formin Homology 2 Domain; Formin Homology 2 Domain; Formin Homology 2 Domain	IPR015425; IPR015425; IPR015425; IPR015425; IPR015425	Formin, FH2 domain; Formin, FH2 domain; Formin, FH2 domain; Formin, FH2 domain; Formin, FH2 domain
hsd_id_Theobroma_cacao_1461	XP_007030988.2; XP_007050858.2	380; 282	Pfam	PF00403; PF00403	Heavy-metal-associated domain; Heavy-metal-associated domain	IPR006121; IPR006121	Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA
hsd_id_Theobroma_cacao_1462	XP_007030996.2; XP_007050876.2	242; 236	Pfam	PF05755; PF05755	Rubber elongation factor protein (REF); Rubber elongation factor protein (REF)	IPR008802; IPR008802	Rubber elongation factor; Rubber elongation factor
hsd_id_Theobroma_cacao_1463	XP_007031008.2; XP_007035605.2	168; 168	Pfam	PF00838; PF00838	Translationally controlled tumour protein; Translationally controlled tumour protein	IPR018105; IPR018105	Translationally controlled tumour protein; Translationally controlled tumour protein
hsd_id_Theobroma_cacao_1464	XP_007031010.1; XP_017978286.1	437; 429	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_1465	XP_007031028.2; XP_017969754.1; XP_007050967.2; XP_017970819.1	148; 170; 154; 173	Pfam	PF04398; PF04398; PF04398; PF04398	Protein of unknown function, DUF538; Protein of unknown function, DUF538; Protein of unknown function, DUF538; Protein of unknown function, DUF538	IPR007493; IPR007493; IPR007493; IPR007493	Protein of unknown function DUF538; Protein of unknown function DUF538; Protein of unknown function DUF538; Protein of unknown function DUF538
hsd_id_Theobroma_cacao_1466	XP_007031029.2; XP_007035630.1; XP_017976757.1; XP_007031030.2; XP_007031037.2; XP_017977742.1	245; 237; 249; 302; 298; 299	Pfam	PF03083; PF03083; PF03083; PF03083; PF03083; PF03083	Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange	IPR004316; IPR004316; IPR004316; IPR004316; IPR004316; IPR004316	SWEET sugar transporter; SWEET sugar transporter; SWEET sugar transporter; SWEET sugar transporter; SWEET sugar transporter; SWEET sugar transporter
hsd_id_Theobroma_cacao_1467	XP_007031040.1; XP_007050974.1	187; 187	Pfam	PF17135; PF17135	Ribosomal protein 60S L18 and 50S L18e; Ribosomal protein 60S L18 and 50S L18e	IPR021131; IPR021131	Ribosomal protein L18e/L15P; Ribosomal protein L18e/L15P
hsd_id_Theobroma_cacao_1468	XP_007031076.2; XP_017976591.1	1578; 1586	Pfam	PF00400, PF00931; PF00400, PF00931	WD domain, G-beta repeat, NB-ARC domain; WD domain, G-beta repeat, NB-ARC domain	IPR001680, IPR002182; IPR001680, IPR002182	WD40 repeat, NB-ARC; WD40 repeat, NB-ARC
hsd_id_Theobroma_cacao_1469	XP_007031080.2; XP_017985485.1	984; 992	Pfam	PF01399; PF01399	PCI domain; PCI domain	IPR000717; IPR000717	Proteasome component (PCI) domain; Proteasome component (PCI) domain
hsd_id_Theobroma_cacao_1470	XP_007031082.1; XP_007045075.2	216; 214	Pfam	PF00436; PF00436	Single-strand binding protein family; Single-strand binding protein family	IPR000424; IPR000424	Primosome PriB/single-strand DNA-binding; Primosome PriB/single-strand DNA-binding
hsd_id_Theobroma_cacao_1471	XP_007031089.2; XP_007035709.2; XP_017981070.1	220; 224; 226	Pfam	PF14571, PF05605; PF05605, PF14571; PF05605, PF14571	Stress-induced protein Di19, C-terminal, Drought induced 19 protein (Di19), zinc-binding; Drought induced 19 protein (Di19), zinc-binding, Stress-induced protein Di19, C-terminal; Drought induced 19 protein (Di19), zinc-binding, Stress-induced protein Di19, C-terminal	IPR027935, IPR008598; IPR008598, IPR027935; IPR008598, IPR027935	Protein dehydration-induced 19, C-terminal, Drought induced 19 protein type, zinc-binding domain; Drought induced 19 protein type, zinc-binding domain, Protein dehydration-induced 19, C-terminal; Drought induced 19 protein type, zinc-binding domain, Protein dehydration-induced 19, C-terminal
hsd_id_Theobroma_cacao_1472	XP_007031091.2; XP_007051030.2	331; 322	Pfam	PF05739; PF05739	SNARE domain; SNARE domain	IPR000727; IPR000727	Target SNARE coiled-coil homology domain; Target SNARE coiled-coil homology domain
hsd_id_Theobroma_cacao_1473	XP_007031125.2; XP_007051065.2; XP_007017349.2	389; 394; 368	Pfam	PF07816; PF07816; PF07816	Protein of unknown function (DUF1645); Protein of unknown function (DUF1645); Protein of unknown function (DUF1645)	IPR012442; IPR012442; IPR012442	Protein of unknown function DUF1645, plant; Protein of unknown function DUF1645, plant; Protein of unknown function DUF1645, plant
hsd_id_Theobroma_cacao_1474	XP_007031130.2; XP_017974125.1	168; 187	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1475	XP_007031131.1; XP_007035750.1; XP_007051084.1; XP_007035749.1	193; 193; 193; 193	Pfam	PF00025; PF00025; PF00025; PF00025	ADP-ribosylation factor family; ADP-ribosylation factor family; ADP-ribosylation factor family; ADP-ribosylation factor family	IPR006689; IPR006689; IPR006689; IPR006689	Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type
hsd_id_Theobroma_cacao_1476	XP_007031163.2; XP_007051121.1	547; 576	Pfam	PF04438, PF04795; PF04795, PF04438	HIT zinc finger, PAPA-1-like conserved region; PAPA-1-like conserved region, HIT zinc finger	IPR007529, IPR006880; IPR006880, IPR007529	Zinc finger, HIT-type, INO80 complex subunit B-like conserved region; INO80 complex subunit B-like conserved region, Zinc finger, HIT-type
hsd_id_Theobroma_cacao_1477	XP_007031173.2; XP_017973735.1	341; 403	Pfam	PF01095; PF01095	Pectinesterase; Pectinesterase	IPR000070; IPR000070	Pectinesterase, catalytic; Pectinesterase, catalytic
hsd_id_Theobroma_cacao_1478	XP_007031177.1; XP_007035839.2	205; 220	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1479	XP_007031180.2; XP_007051174.2; XP_017981119.1; XP_007048860.2	531; 537; 522; 540	Pfam	PF01553; PF01553; PF01553; PF01553	Acyltransferase; Acyltransferase; Acyltransferase; Acyltransferase	IPR002123; IPR002123; IPR002123; IPR002123	Phospholipid/glycerol acyltransferase; Phospholipid/glycerol acyltransferase; Phospholipid/glycerol acyltransferase; Phospholipid/glycerol acyltransferase
hsd_id_Theobroma_cacao_1480	XP_007031183.1; XP_017976992.1; XP_007051049.1; XP_017975665.1; XP_017975574.1	536; 529; 534; 532; 524	Pfam	PF00514, PF01749, PF16186; PF16186, PF00514, PF01749; PF16186, PF00514, PF01749; PF01749, PF16186, PF00514; PF01749, PF00514, PF16186	Armadillo/beta-catenin-like repeat, Importin beta binding domain, Atypical Arm repeat; Atypical Arm repeat, Armadillo/beta-catenin-like repeat, Importin beta binding domain; Atypical Arm repeat, Armadillo/beta-catenin-like repeat, Importin beta binding domain; Importin beta binding domain, Atypical Arm repeat, Armadillo/beta-catenin-like repeat; Importin beta binding domain, Armadillo/beta-catenin-like repeat, Atypical Arm repeat	IPR000225, IPR002652, IPR032413; IPR032413, IPR000225, IPR002652; IPR032413, IPR000225, IPR002652; IPR002652, IPR032413, IPR000225; IPR002652, IPR000225, IPR032413	Armadillo, Importin-alpha, importin-beta-binding domain, Atypical Arm repeat; Atypical Arm repeat, Armadillo, Importin-alpha, importin-beta-binding domain; Atypical Arm repeat, Armadillo, Importin-alpha, importin-beta-binding domain; Importin-alpha, importin-beta-binding domain, Atypical Arm repeat, Armadillo; Importin-alpha, importin-beta-binding domain, Armadillo, Atypical Arm repeat
hsd_id_Theobroma_cacao_1481	XP_007031201.2; XP_017975441.1; XP_017982747.1; XP_017984799.1; XP_007041939.1; XP_017981047.1; XP_017981564.1	669; 677; 623; 650; 574; 557; 564	Pfam	PF12899; PF12899; PF12899; PF12899; PF12899; PF12899; PF12899	Alkaline and neutral invertase; Alkaline and neutral invertase; Alkaline and neutral invertase; Alkaline and neutral invertase; Alkaline and neutral invertase; Alkaline and neutral invertase; Alkaline and neutral invertase	IPR024746; IPR024746; IPR024746; IPR024746; IPR024746; IPR024746; IPR024746	Glycosyl hydrolase family 100; Glycosyl hydrolase family 100; Glycosyl hydrolase family 100; Glycosyl hydrolase family 100; Glycosyl hydrolase family 100; Glycosyl hydrolase family 100; Glycosyl hydrolase family 100
hsd_id_Theobroma_cacao_1482	XP_007031210.1; XP_007051210.2; XP_017974748.1; XP_007044673.2; XP_007035902.1	348; 336; 318; 336; 324	Pfam	PF01501; PF01501; PF01501; PF01501; PF01501	Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8; Glycosyl transferase family 8	IPR002495; IPR002495; IPR002495; IPR002495; IPR002495	Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8; Glycosyl transferase, family 8
hsd_id_Theobroma_cacao_1483	XP_007031222.2; XP_017969907.1; XP_007043909.1; XP_017975477.1	643; 592; 601; 514	Pfam	PF02781, PF00479; PF02781, PF00479; PF00479, PF02781; PF02781, PF00479	Glucose-6-phosphate dehydrogenase, C-terminal domain, Glucose-6-phosphate dehydrogenase, NAD binding domain; Glucose-6-phosphate dehydrogenase, C-terminal domain, Glucose-6-phosphate dehydrogenase, NAD binding domain; Glucose-6-phosphate dehydrogenase, NAD binding domain, Glucose-6-phosphate dehydrogenase, C-terminal domain; Glucose-6-phosphate dehydrogenase, C-terminal domain, Glucose-6-phosphate dehydrogenase, NAD binding domain	IPR022675, IPR022674; IPR022675, IPR022674; IPR022674, IPR022675; IPR022675, IPR022674	Glucose-6-phosphate dehydrogenase, C-terminal, Glucose-6-phosphate dehydrogenase, NAD-binding; Glucose-6-phosphate dehydrogenase, C-terminal, Glucose-6-phosphate dehydrogenase, NAD-binding; Glucose-6-phosphate dehydrogenase, NAD-binding, Glucose-6-phosphate dehydrogenase, C-terminal; Glucose-6-phosphate dehydrogenase, C-terminal, Glucose-6-phosphate dehydrogenase, NAD-binding
hsd_id_Theobroma_cacao_1484	XP_007031223.1; XP_017970122.1	220; 214	Pfam	PF01470; PF01470	Pyroglutamyl peptidase; Pyroglutamyl peptidase	IPR016125; IPR016125	Peptidase C15, pyroglutamyl peptidase I-like; Peptidase C15, pyroglutamyl peptidase I-like
hsd_id_Theobroma_cacao_1485	XP_007031233.2; XP_017976898.1	1065; 1071	Pfam	PF14826, PF08644, PF08512, PF00557; PF14826, PF08512, PF08644, PF00557	FACT complex subunit SPT16 N-terminal lobe domain, FACT complex subunit (SPT16/CDC68), Histone chaperone Rttp106-like, Metallopeptidase family M24; FACT complex subunit SPT16 N-terminal lobe domain, Histone chaperone Rttp106-like, FACT complex subunit (SPT16/CDC68), Metallopeptidase family M24	IPR029148, IPR013953, IPR013719, IPR000994; IPR029148, IPR013719, IPR013953, IPR000994	FACT complex subunit Spt16, N-terminal lobe domain, FACT complex subunit Spt16 domain, Domain of unknown function DUF1747, Peptidase M24; FACT complex subunit Spt16, N-terminal lobe domain, Domain of unknown function DUF1747, FACT complex subunit Spt16 domain, Peptidase M24
hsd_id_Theobroma_cacao_1486	XP_007031235.1; XP_007044704.1	423; 423	Pfam	PF08442, PF16114; PF16114, PF08442	ATP-grasp domain, ATP citrate lyase citrate-binding; ATP citrate lyase citrate-binding, ATP-grasp domain	IPR013650, IPR032263; IPR032263, IPR013650	ATP-grasp fold, succinyl-CoA synthetase-type, ATP-citrate synthase, citrate-binding domain; ATP-citrate synthase, citrate-binding domain, ATP-grasp fold, succinyl-CoA synthetase-type
hsd_id_Theobroma_cacao_1487	XP_007031236.2; XP_017975671.1; XP_007039219.2	329; 327; 330	Pfam	PF00141; PF00141; PF00141	Peroxidase; Peroxidase; Peroxidase	IPR002016; IPR002016; IPR002016	Haem peroxidase; Haem peroxidase; Haem peroxidase
hsd_id_Theobroma_cacao_1488	XP_007031244.2; XP_007048877.2; XP_017981779.1	509; 508; 518	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1489	XP_007031260.2; XP_017975622.1	765; 746	Pfam	PF04434, PF00564, PF03108, PF10551; PF10551, PF00564, PF03108, PF04434	SWIM zinc finger, PB1 domain, MuDR family transposase, MULE transposase domain; MULE transposase domain, PB1 domain, MuDR family transposase, SWIM zinc finger	IPR007527, IPR000270, IPR004332, IPR018289; IPR018289, IPR000270, IPR004332, IPR007527	Zinc finger, SWIM-type, PB1 domain, Transposase, MuDR, plant, MULE transposase domain; MULE transposase domain, PB1 domain, Transposase, MuDR, plant, Zinc finger, SWIM-type
hsd_id_Theobroma_cacao_1490	XP_007031263.1; XP_007051290.2	542; 451	Pfam	PF00266; PF00266	Aminotransferase class-V; Aminotransferase class-V	IPR000192; IPR000192	Aminotransferase class V domain; Aminotransferase class V domain
hsd_id_Theobroma_cacao_1491	XP_007031286.2; XP_017980948.1; XP_017981405.1; XP_017978335.1	629; 554; 511; 607	Pfam	PF00854; PF00854; PF00854; PF00854	POT family; POT family; POT family; POT family	IPR000109; IPR000109; IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_1492	XP_007031360.2; XP_017983827.1	288; 207	Pfam	PF00536; PF00536	SAM domain (Sterile alpha motif); SAM domain (Sterile alpha motif)	IPR001660; IPR001660	Sterile alpha motif domain; Sterile alpha motif domain
hsd_id_Theobroma_cacao_1493	XP_007031365.2; XP_007036106.2	574; 549	Pfam	PF04564, PF00514; PF04564, PF00514	U-box domain, Armadillo/beta-catenin-like repeat; U-box domain, Armadillo/beta-catenin-like repeat	IPR003613, IPR000225; IPR003613, IPR000225	U box domain, Armadillo; U box domain, Armadillo
hsd_id_Theobroma_cacao_1494	XP_007031399.2; XP_007031402.2; XP_017974197.1; XP_007031400.2; XP_017975392.1; XP_017974433.1	361; 361; 355; 349; 374; 276	Pfam	PF00892; PF00892; PF00892; PF00892; PF00892; PF00892	EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family	IPR000620; IPR000620; IPR000620; IPR000620; IPR000620; IPR000620	EamA domain; EamA domain; EamA domain; EamA domain; EamA domain; EamA domain
hsd_id_Theobroma_cacao_1495	XP_007031406.2; XP_007044597.2; XP_017970138.1; XP_007036147.2	350; 350; 354; 379	Pfam	PF00892; PF00892; PF00892; PF00892	EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family	IPR000620; IPR000620; IPR000620; IPR000620	EamA domain; EamA domain; EamA domain; EamA domain
hsd_id_Theobroma_cacao_1496	XP_007031410.2; XP_007052242.2; XP_017973963.1	312; 311; 356	Pfam	PF00917; PF00917; PF00917	MATH domain; MATH domain; MATH domain	IPR002083; IPR002083; IPR002083	MATH/TRAF domain; MATH/TRAF domain; MATH/TRAF domain
hsd_id_Theobroma_cacao_1497	XP_007031433.2; XP_007032488.1; XP_017971986.1; XP_017981874.1	276; 283; 287; 279	Pfam	PF02183, PF00046; PF00046, PF02183; PF00046, PF02183; PF00046, PF02183	Homeobox associated leucine zipper, Homeodomain; Homeodomain, Homeobox associated leucine zipper; Homeodomain, Homeobox associated leucine zipper; Homeodomain, Homeobox associated leucine zipper	IPR003106, IPR001356; IPR001356, IPR003106; IPR001356, IPR003106; IPR001356, IPR003106	Leucine zipper, homeobox-associated, Homeobox domain; Homeobox domain, Leucine zipper, homeobox-associated; Homeobox domain, Leucine zipper, homeobox-associated; Homeobox domain, Leucine zipper, homeobox-associated
hsd_id_Theobroma_cacao_1498	XP_007031434.1; XP_007036182.2; XP_007040592.2; XP_007031435.2	247; 232; 255; 235	Pfam	PF03083; PF03083; PF03083; PF03083	Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange; Sugar efflux transporter for intercellular exchange	IPR004316; IPR004316; IPR004316; IPR004316	SWEET sugar transporter; SWEET sugar transporter; SWEET sugar transporter; SWEET sugar transporter
hsd_id_Theobroma_cacao_1499	XP_007031441.2; XP_007036183.2; XP_017974664.1	378; 386; 393	Pfam	PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1500	XP_007031446.2; XP_017971536.1	519; 468	Pfam	PF01966; PF01966	HD domain; HD domain	IPR006674; IPR006674	HD domain; HD domain
hsd_id_Theobroma_cacao_1501	XP_007031454.2; XP_017974070.1	362; 307	Pfam	PF04535; PF04535	Domain of unknown function (DUF588); Domain of unknown function (DUF588)	IPR006702; IPR006702	Casparian strip membrane protein domain; Casparian strip membrane protein domain
hsd_id_Theobroma_cacao_1502	XP_007031458.2; XP_017974831.1; XP_017971444.1; XP_017974137.1; XP_017975428.1	326; 323; 388; 320; 320	Pfam	PF08240, PF13602; PF13602, PF08240; PF13602, PF08240; PF08240, PF13602; PF08240, PF13602	Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase	IPR013154, -; -, IPR013154; -, IPR013154; IPR013154, -; IPR013154, -	Alcohol dehydrogenase, N-terminal, -; -, Alcohol dehydrogenase, N-terminal; -, Alcohol dehydrogenase, N-terminal; Alcohol dehydrogenase, N-terminal, -; Alcohol dehydrogenase, N-terminal, -
hsd_id_Theobroma_cacao_1503	XP_007031483.2; XP_007039408.2; XP_017978612.1	687; 730; 696	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1504	XP_007031503.2; XP_017971457.1	460; 524	Pfam	PF00295; PF00295	Glycosyl hydrolases family 28; Glycosyl hydrolases family 28	IPR000743; IPR000743	Glycoside hydrolase, family 28; Glycoside hydrolase, family 28
hsd_id_Theobroma_cacao_1505	XP_007031527.2; XP_007036241.2	408; 412	Pfam	PF03151; PF03151	Triose-phosphate Transporter family; Triose-phosphate Transporter family	IPR004853; IPR004853	Sugar phosphate transporter domain; Sugar phosphate transporter domain
hsd_id_Theobroma_cacao_1506	XP_007031531.2; XP_017973596.1; XP_007044703.2	337; 346; 332	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_1507	XP_007031540.2; XP_007036266.2	665; 649	Pfam	PF00069, PF01657; PF00069, PF01657	Protein kinase domain, Salt stress response/antifungal; Protein kinase domain, Salt stress response/antifungal	IPR000719, IPR002902; IPR000719, IPR002902	Protein kinase domain, Gnk2-homologous domain; Protein kinase domain, Gnk2-homologous domain
hsd_id_Theobroma_cacao_1508	XP_007031549.2; XP_017979467.1; XP_017984528.1	372; 384; 384	Pfam	PF02485; PF02485; PF02485	Core-2/I-Branching enzyme; Core-2/I-Branching enzyme; Core-2/I-Branching enzyme	IPR003406; IPR003406; IPR003406	Glycosyl transferase, family 14; Glycosyl transferase, family 14; Glycosyl transferase, family 14
hsd_id_Theobroma_cacao_1509	XP_007031560.2; XP_017969904.1	344; 347	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_1510	XP_007031561.1; XP_017972464.1	160; 159	Pfam	PF01277; PF01277	Oleosin; Oleosin	IPR000136; IPR000136	Oleosin; Oleosin
hsd_id_Theobroma_cacao_1511	XP_007031572.1; XP_017970460.1	107; 112	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1512	XP_007031595.2; XP_017974768.1; XP_007031599.2	508; 508; 508	Pfam	PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_1513	XP_007031618.2; XP_007044821.2; XP_017984025.1; XP_017978736.1; XP_007049550.1; XP_007041143.1; XP_017977312.1	404; 392; 380; 400; 385; 416; 389	Pfam	PF05212; PF05212; PF05212; PF05212; PF05212; PF05212; PF05212	Protein of unknown function (DUF707); Protein of unknown function (DUF707); Protein of unknown function (DUF707); Protein of unknown function (DUF707); Protein of unknown function (DUF707); Protein of unknown function (DUF707); Protein of unknown function (DUF707)	IPR007877; IPR007877; IPR007877; IPR007877; IPR007877; IPR007877; IPR007877	Protein of unknown function DUF707; Protein of unknown function DUF707; Protein of unknown function DUF707; Protein of unknown function DUF707; Protein of unknown function DUF707; Protein of unknown function DUF707; Protein of unknown function DUF707
hsd_id_Theobroma_cacao_1514	XP_007031638.2; XP_017980212.1; XP_007031841.2; XP_017973284.1	453; 478; 466; 512	Pfam	PF14681, PF00485; PF00485, PF14681; PF00485, PF14681; PF14681, PF00485	Uracil phosphoribosyltransferase, Phosphoribulokinase / Uridine kinase family; Phosphoribulokinase / Uridine kinase family, Uracil phosphoribosyltransferase; Phosphoribulokinase / Uridine kinase family, Uracil phosphoribosyltransferase; Uracil phosphoribosyltransferase, Phosphoribulokinase / Uridine kinase family	-, IPR006083; IPR006083, -; IPR006083, -; -, IPR006083	-, Phosphoribulokinase/uridine kinase; Phosphoribulokinase/uridine kinase, -; Phosphoribulokinase/uridine kinase, -; -, Phosphoribulokinase/uridine kinase
hsd_id_Theobroma_cacao_1515	XP_007031656.2; XP_007049443.2	478; 476	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_1516	XP_007031673.2; XP_007036625.2	1087; 1082	Pfam	PF01422; PF01422	NF-X1 type zinc finger; NF-X1 type zinc finger	IPR000967; IPR000967	Zinc finger, NF-X1-type; Zinc finger, NF-X1-type
hsd_id_Theobroma_cacao_1517	XP_007031682.2; XP_017985207.1	379; 379	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_1518	XP_007031709.2; XP_007037874.2	279; 270	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1519	XP_007031719.2; XP_007031720.1	211; 223	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1520	XP_007031724.2; XP_007047985.2	283; 301	Pfam	PF13085, PF13534; PF13085, PF13534	2Fe-2S iron-sulfur cluster binding domain, 4Fe-4S dicluster domain; 2Fe-2S iron-sulfur cluster binding domain, 4Fe-4S dicluster domain	IPR025192, -; IPR025192, -	Succinate dehydogenase/fumarate reductase N-terminal, -; Succinate dehydogenase/fumarate reductase N-terminal, -
hsd_id_Theobroma_cacao_1521	XP_007031725.2; XP_007050814.1; XP_017975652.1; XP_007029391.1; XP_017972829.1	468; 476; 472; 451; 478	Pfam	PF00642; PF00642; PF00642; PF00642; PF00642	Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar)	IPR000571; IPR000571; IPR000571; IPR000571; IPR000571	Zinc finger, CCCH-type; Zinc finger, CCCH-type; Zinc finger, CCCH-type; Zinc finger, CCCH-type; Zinc finger, CCCH-type
hsd_id_Theobroma_cacao_1522	XP_007031731.1; XP_007044961.2	448; 395	Pfam	PF07859; PF07859	alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR013094; IPR013094	Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3
hsd_id_Theobroma_cacao_1523	XP_007031732.2; XP_017971669.1; XP_007044975.2; XP_007049146.2; XP_017977533.1; XP_017983168.1; XP_017983468.1	525; 523; 518; 545; 496; 503; 506	Pfam	PF01603; PF01603; PF01603; PF01603; PF01603; PF01603; PF01603	Protein phosphatase 2A regulatory B subunit (B56 family); Protein phosphatase 2A regulatory B subunit (B56 family); Protein phosphatase 2A regulatory B subunit (B56 family); Protein phosphatase 2A regulatory B subunit (B56 family); Protein phosphatase 2A regulatory B subunit (B56 family); Protein phosphatase 2A regulatory B subunit (B56 family); Protein phosphatase 2A regulatory B subunit (B56 family)	IPR002554; IPR002554; IPR002554; IPR002554; IPR002554; IPR002554; IPR002554	Protein phosphatase 2A, regulatory B subunit, B56; Protein phosphatase 2A, regulatory B subunit, B56; Protein phosphatase 2A, regulatory B subunit, B56; Protein phosphatase 2A, regulatory B subunit, B56; Protein phosphatase 2A, regulatory B subunit, B56; Protein phosphatase 2A, regulatory B subunit, B56; Protein phosphatase 2A, regulatory B subunit, B56
hsd_id_Theobroma_cacao_1524	XP_007031744.2; XP_007037904.2; XP_017969947.1; XP_017980702.1	337; 337; 342; 424	Pfam	PF00044, PF02800; PF02800, PF00044; PF00044, PF02800; PF02800, PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain, Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain, Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	IPR020828, IPR020829; IPR020829, IPR020828; IPR020828, IPR020829; IPR020829, IPR020828	Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain, Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain, Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
hsd_id_Theobroma_cacao_1525	XP_007031746.1; XP_007043712.1	280; 290	Pfam	PF01145; PF01145	SPFH domain / Band 7 family; SPFH domain / Band 7 family	IPR001107; IPR001107	Band 7 domain; Band 7 domain
hsd_id_Theobroma_cacao_1526	XP_007031759.1; XP_017975643.1; XP_017972726.1; XP_017970102.1	452; 449; 439; 435	Pfam	PF01490; PF01490; PF01490; PF01490	Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein	IPR013057; IPR013057; IPR013057; IPR013057	Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain
hsd_id_Theobroma_cacao_1527	XP_007031760.2; XP_007044997.1	247; 249	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1528	XP_007031776.2; XP_017979403.1	439; 430	Pfam	PF01344, PF13418; PF13418, PF01344	Kelch motif, Galactose oxidase, central domain; Galactose oxidase, central domain, Kelch motif	IPR006652, -; -, IPR006652	Kelch repeat type 1, -; -, Kelch repeat type 1
hsd_id_Theobroma_cacao_1529	XP_007031778.2; XP_017973556.1; XP_017970078.1	548; 556; 545	Pfam	PF13193, PF00501; PF00501, PF13193; PF13193, PF00501	AMP-binding enzyme C-terminal domain, AMP-binding enzyme; AMP-binding enzyme, AMP-binding enzyme C-terminal domain; AMP-binding enzyme C-terminal domain, AMP-binding enzyme	IPR025110, IPR000873; IPR000873, IPR025110; IPR025110, IPR000873	AMP-binding enzyme, C-terminal domain, AMP-dependent synthetase/ligase; AMP-dependent synthetase/ligase, AMP-binding enzyme, C-terminal domain; AMP-binding enzyme, C-terminal domain, AMP-dependent synthetase/ligase
hsd_id_Theobroma_cacao_1530	XP_007031800.2; XP_017974800.1; XP_017974602.1	319; 317; 351	Pfam	PF00106; PF00106; PF00106	short chain dehydrogenase; short chain dehydrogenase; short chain dehydrogenase	IPR002347; IPR002347; IPR002347	Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR
hsd_id_Theobroma_cacao_1531	XP_007031810.2; XP_007037941.2	268; 269	Pfam	PF00406; PF00406	Adenylate kinase; Adenylate kinase	-; -	-; -
hsd_id_Theobroma_cacao_1532	XP_007031818.2; XP_017974826.1; XP_017974393.1; XP_007031831.2; XP_017974300.1	444; 444; 442; 424; 434	Pfam	PF03140; PF03140; PF03140; PF03140; PF03140	Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function	IPR004158; IPR004158; IPR004158; IPR004158; IPR004158	Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant
hsd_id_Theobroma_cacao_1533	XP_007031825.2; XP_017974777.1	128; 118	Pfam	PF13499; PF13499	EF-hand domain pair; EF-hand domain pair	IPR002048; IPR002048	EF-hand domain; EF-hand domain
hsd_id_Theobroma_cacao_1534	XP_007031869.1; XP_007040571.1	304; 326	Pfam	PF10539; PF10539	Development and cell death domain; Development and cell death domain	IPR013989; IPR013989	Development/cell death domain; Development/cell death domain
hsd_id_Theobroma_cacao_1535	XP_007031883.1; XP_017974178.1	329; 359	Pfam	PF00268; PF00268	Ribonucleotide reductase, small chain; Ribonucleotide reductase, small chain	IPR000358; IPR000358	Ribonucleotide reductase small subunit family; Ribonucleotide reductase small subunit family
hsd_id_Theobroma_cacao_1536	XP_007031898.1; XP_017972210.1	69; 69	Pfam	PF00584; PF00584	SecE/Sec61-gamma subunits of protein translocation complex; SecE/Sec61-gamma subunits of protein translocation complex	IPR001901; IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit; Protein translocase complex, SecE/Sec61-gamma subunit
hsd_id_Theobroma_cacao_1537	XP_007031903.2; XP_007037994.2	591; 588	Pfam	PF06813; PF06813	Nodulin-like; Nodulin-like	IPR010658; IPR010658	Nodulin-like; Nodulin-like
hsd_id_Theobroma_cacao_1538	XP_007031923.2; XP_007043907.1	314; 294	Pfam	PF03634; PF03634	TCP family transcription factor; TCP family transcription factor	IPR017887; IPR017887	Transcription factor TCP subgroup; Transcription factor TCP subgroup
hsd_id_Theobroma_cacao_1539	XP_007031930.1; XP_007038052.1	259; 258	Pfam	PF01248; PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	IPR004038; IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45; Ribosomal protein L7Ae/L30e/S12e/Gadd45
hsd_id_Theobroma_cacao_1540	XP_007031942.2; XP_007043876.2	699; 666	Pfam	PF03081; PF03081	Exo70 exocyst complex subunit; Exo70 exocyst complex subunit	IPR004140; IPR004140	Exocyst complex component Exo70; Exocyst complex component Exo70
hsd_id_Theobroma_cacao_1541	XP_007031960.2; XP_007043861.2	649; 654	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1542	XP_007031966.2; XP_017975081.1; XP_017975086.1; XP_017977369.1	698; 704; 641; 710	Pfam	PF12146, PF03982; PF12146, PF03982; PF03982, PF12146; PF12146, PF03982	Serine aminopeptidase, S33, Diacylglycerol acyltransferase; Serine aminopeptidase, S33, Diacylglycerol acyltransferase; Diacylglycerol acyltransferase, Serine aminopeptidase, S33; Serine aminopeptidase, S33, Diacylglycerol acyltransferase	IPR022742, IPR007130; IPR022742, IPR007130; IPR007130, IPR022742; IPR022742, IPR007130	Serine aminopeptidase, S33, Diacylglycerol acyltransferase; Serine aminopeptidase, S33, Diacylglycerol acyltransferase; Diacylglycerol acyltransferase, Serine aminopeptidase, S33; Serine aminopeptidase, S33, Diacylglycerol acyltransferase
hsd_id_Theobroma_cacao_1543	XP_007031987.1; XP_007038096.2	489; 489	Pfam	PF00155; PF00155	Aminotransferase class I and II; Aminotransferase class I and II	IPR004839; IPR004839	Aminotransferase, class I/classII; Aminotransferase, class I/classII
hsd_id_Theobroma_cacao_1544	XP_007032007.2; XP_007050766.2	291; 299	Pfam	PF13561; PF13561	Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase	-; -	-; -
hsd_id_Theobroma_cacao_1545	XP_007032011.2; XP_017971704.1	566; 573	Pfam	PF00696; PF00696	Amino acid kinase family; Amino acid kinase family	IPR001048; IPR001048	Aspartate/glutamate/uridylate kinase; Aspartate/glutamate/uridylate kinase
hsd_id_Theobroma_cacao_1546	XP_007032025.2; XP_017973259.1; XP_007032026.2; XP_017969418.1	1018; 1010; 1015; 1022	Pfam	PF09261, PF07748, PF17677, PF01074; PF01074, PF09261, PF07748, PF17677; PF01074, PF17677, PF09261, PF07748; PF09261, PF07748, PF01074, PF17677	Alpha mannosidase middle domain, Glycosyl hydrolases family 38 C-terminal domain, Glycosyl hydrolases family 38 C-terminal beta sandwich domain, Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases family 38 N-terminal domain, Alpha mannosidase middle domain, Glycosyl hydrolases family 38 C-terminal domain, Glycosyl hydrolases family 38 C-terminal beta sandwich domain; Glycosyl hydrolases family 38 N-terminal domain, Glycosyl hydrolases family 38 C-terminal beta sandwich domain, Alpha mannosidase middle domain, Glycosyl hydrolases family 38 C-terminal domain; Alpha mannosidase middle domain, Glycosyl hydrolases family 38 C-terminal domain, Glycosyl hydrolases family 38 N-terminal domain, Glycosyl hydrolases family 38 C-terminal beta sandwich domain	IPR015341, IPR011682, IPR041147, IPR000602; IPR000602, IPR015341, IPR011682, IPR041147; IPR000602, IPR041147, IPR015341, IPR011682; IPR015341, IPR011682, IPR000602, IPR041147	Glycoside hydrolase family 38, central domain, Glycosyl hydrolase family 38, C-terminal, Glycosyl hydrolases family 38, C-terminal beta sandwich domain, Glycoside hydrolase family 38, N-terminal domain; Glycoside hydrolase family 38, N-terminal domain, Glycoside hydrolase family 38, central domain, Glycosyl hydrolase family 38, C-terminal, Glycosyl hydrolases family 38, C-terminal beta sandwich domain; Glycoside hydrolase family 38, N-terminal domain, Glycosyl hydrolases family 38, C-terminal beta sandwich domain, Glycoside hydrolase family 38, central domain, Glycosyl hydrolase family 38, C-terminal; Glycoside hydrolase family 38, central domain, Glycosyl hydrolase family 38, C-terminal, Glycoside hydrolase family 38, N-terminal domain, Glycosyl hydrolases family 38, C-terminal beta sandwich domain
hsd_id_Theobroma_cacao_1547	XP_007032040.1; XP_007032041.2	492; 490	Pfam	PF12576; PF12576	Protein of unknown function (DUF3754); Protein of unknown function (DUF3754)	IPR022227; IPR022227	Protein of unknown function DUF3754; Protein of unknown function DUF3754
hsd_id_Theobroma_cacao_1548	XP_007032054.2; XP_017973552.1	496; 505	Pfam	PF13499, PF13202, PF00153; PF00153, PF13499, PF13202	EF-hand domain pair, EF hand, Mitochondrial carrier protein; Mitochondrial carrier protein, EF-hand domain pair, EF hand	IPR002048, IPR002048, IPR018108; IPR018108, IPR002048, IPR002048	EF-hand domain, EF-hand domain, Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier, EF-hand domain, EF-hand domain
hsd_id_Theobroma_cacao_1549	XP_007032079.2; XP_007050005.1	309; 270	Pfam	PF00168; PF00168	C2 domain; C2 domain	IPR000008; IPR000008	C2 domain; C2 domain
hsd_id_Theobroma_cacao_1550	XP_007032081.2; XP_017977433.1; XP_017975512.1; XP_017974119.1; XP_017974175.1; XP_017980831.1	394; 393; 396; 396; 394; 388	Pfam	PF03405; PF03405; PF03405; PF03405; PF03405; PF03405	Fatty acid desaturase; Fatty acid desaturase; Fatty acid desaturase; Fatty acid desaturase; Fatty acid desaturase; Fatty acid desaturase	IPR005067; IPR005067; IPR005067; IPR005067; IPR005067; IPR005067	Fatty acid desaturase, type 2; Fatty acid desaturase, type 2; Fatty acid desaturase, type 2; Fatty acid desaturase, type 2; Fatty acid desaturase, type 2; Fatty acid desaturase, type 2
hsd_id_Theobroma_cacao_1551	XP_007032125.1; XP_007045255.1; XP_007036922.1; XP_017984112.1; XP_017975146.1; XP_007043743.1	181; 175; 212; 169; 229; 204	Pfam	PF00293; PF00293; PF00293; PF00293; PF00293; PF00293	NUDIX domain; NUDIX domain; NUDIX domain; NUDIX domain; NUDIX domain; NUDIX domain	IPR000086; IPR000086; IPR000086; IPR000086; IPR000086; IPR000086	NUDIX hydrolase domain; NUDIX hydrolase domain; NUDIX hydrolase domain; NUDIX hydrolase domain; NUDIX hydrolase domain; NUDIX hydrolase domain
hsd_id_Theobroma_cacao_1552	XP_007032197.2; XP_007048950.1; XP_007048952.2	214; 217; 217	Pfam	PF00043, PF02798; PF00043, PF02798; PF00043, PF02798	Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain	IPR004046, IPR004045; IPR004046, IPR004045; IPR004046, IPR004045	Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal
hsd_id_Theobroma_cacao_1553	XP_007032271.2; XP_017971281.1	384; 383	Pfam	PF16113; PF16113	Enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase	IPR045004; IPR045004	Enoyl-CoA hydratase/isomerase domain; Enoyl-CoA hydratase/isomerase domain
hsd_id_Theobroma_cacao_1554	XP_007032314.2; XP_017979480.1	301; 301	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_1555	XP_007032350.2; XP_017974994.1	307; 302	Pfam	PF01549, PF13640; PF13640, PF01549	ShK domain-like, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, ShK domain-like	IPR003582, IPR044862; IPR044862, IPR003582	ShKT domain, Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain; Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain, ShKT domain
hsd_id_Theobroma_cacao_1556	XP_007032385.2; XP_017980896.1	683; 683	Pfam	PF01535, PF13041; PF01535, PF13041	PPR repeat, PPR repeat family; PPR repeat, PPR repeat family	IPR002885, IPR002885; IPR002885, IPR002885	Pentatricopeptide repeat, Pentatricopeptide repeat; Pentatricopeptide repeat, Pentatricopeptide repeat
hsd_id_Theobroma_cacao_1557	XP_007032405.1; XP_007032410.2; XP_017972221.1	501; 518; 507	Pfam	PF14363, PF00004; PF14363, PF00004; PF14363, PF00004	Domain associated at C-terminal with AAA, ATPase family associated with various cellular activities (AAA); Domain associated at C-terminal with AAA, ATPase family associated with various cellular activities (AAA); Domain associated at C-terminal with AAA, ATPase family associated with various cellular activities (AAA)	IPR025753, IPR003959; IPR025753, IPR003959; IPR025753, IPR003959	AAA-type ATPase, N-terminal domain, ATPase, AAA-type, core; AAA-type ATPase, N-terminal domain, ATPase, AAA-type, core; AAA-type ATPase, N-terminal domain, ATPase, AAA-type, core
hsd_id_Theobroma_cacao_1558	XP_007032421.2; XP_007037172.2	696; 705	Pfam	PF07995; PF07995	Glucose / Sorbosone dehydrogenase; Glucose / Sorbosone dehydrogenase	IPR012938; IPR012938	Glucose/Sorbosone dehydrogenase; Glucose/Sorbosone dehydrogenase
hsd_id_Theobroma_cacao_1559	XP_007032429.2; XP_007044392.1	139; 116	Pfam	PF00085; PF00085	Thioredoxin; Thioredoxin	IPR013766; IPR013766	Thioredoxin domain; Thioredoxin domain
hsd_id_Theobroma_cacao_1560	XP_007032473.1; XP_017974737.1; XP_017972851.1; XP_017972680.1; XP_007036806.2	364; 356; 353; 353; 336	Pfam	PF01263; PF01263; PF01263; PF01263; PF01263	Aldose 1-epimerase; Aldose 1-epimerase; Aldose 1-epimerase; Aldose 1-epimerase; Aldose 1-epimerase	IPR008183; IPR008183; IPR008183; IPR008183; IPR008183	Aldose 1-/Glucose-6-phosphate 1-epimerase; Aldose 1-/Glucose-6-phosphate 1-epimerase; Aldose 1-/Glucose-6-phosphate 1-epimerase; Aldose 1-/Glucose-6-phosphate 1-epimerase; Aldose 1-/Glucose-6-phosphate 1-epimerase
hsd_id_Theobroma_cacao_1561	XP_007032505.1; XP_007037295.1	197; 197	Pfam	PF01479, PF00163; PF00163, PF01479	S4 domain, Ribosomal protein S4/S9 N-terminal domain; Ribosomal protein S4/S9 N-terminal domain, S4 domain	IPR002942, IPR001912; IPR001912, IPR002942	RNA-binding S4 domain, Ribosomal protein S4/S9, N-terminal; Ribosomal protein S4/S9, N-terminal, RNA-binding S4 domain
hsd_id_Theobroma_cacao_1562	XP_007032560.2; XP_017974895.1	242; 232	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1563	XP_007032570.2; XP_007038965.2	466; 442	Pfam	PF11835, PF13893, PF00076; PF00076, PF11835, PF13893	RRM-like domain, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), RRM-like domain, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR021790, -, IPR000504; IPR000504, IPR021790, -	PTBP1, RNA recognition motif 2-like, -, RNA recognition motif domain; RNA recognition motif domain, PTBP1, RNA recognition motif 2-like, -
hsd_id_Theobroma_cacao_1564	XP_007032609.1; XP_007046004.2	214; 212	Pfam	PF01105; PF01105	emp24/gp25L/p24 family/GOLD; emp24/gp25L/p24 family/GOLD	IPR009038; IPR009038	GOLD domain; GOLD domain
hsd_id_Theobroma_cacao_1565	XP_007032615.1; XP_007037430.2; XP_007045998.1	221; 221; 223	Pfam	PF12352, PF05008; PF12352, PF05008; PF12352, PF05008	Snare region anchored in the vesicle membrane C-terminus, Vesicle transport v-SNARE protein N-terminus; Snare region anchored in the vesicle membrane C-terminus, Vesicle transport v-SNARE protein N-terminus; Snare region anchored in the vesicle membrane C-terminus, Vesicle transport v-SNARE protein N-terminus	-, IPR007705; -, IPR007705; -, IPR007705	-, Vesicle transport v-SNARE, N-terminal; -, Vesicle transport v-SNARE, N-terminal; -, Vesicle transport v-SNARE, N-terminal
hsd_id_Theobroma_cacao_1566	XP_007032625.2; XP_017971370.1	566; 495	Pfam	PF07059; PF07059	Protein of unknown function (DUF1336); Protein of unknown function (DUF1336)	IPR009769; IPR009769	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal; Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
hsd_id_Theobroma_cacao_1567	XP_007032633.2; XP_017982740.1; XP_007032634.2	160; 168; 173	Pfam	PF02298; PF02298; PF02298	Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain	IPR003245; IPR003245; IPR003245	Phytocyanin domain; Phytocyanin domain; Phytocyanin domain
hsd_id_Theobroma_cacao_1568	XP_007032636.2; XP_007045961.2; XP_017983875.1	324; 319; 278	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_1569	XP_007032644.2; XP_017975312.1	381; 434	Pfam	PF08268, PF00646; PF00646, PF08268	F-box associated domain, F-box domain; F-box domain, F-box associated domain	IPR013187, IPR001810; IPR001810, IPR013187	F-box associated domain, type 3, F-box domain; F-box domain, F-box associated domain, type 3
hsd_id_Theobroma_cacao_1570	XP_007032660.1; XP_017973955.1; XP_017970554.1	267; 260; 262	Pfam	PF13445; PF13445; PF13445	RING-type zinc-finger; RING-type zinc-finger; RING-type zinc-finger	IPR027370; IPR027370; IPR027370	RING-type zinc-finger, LisH dimerisation motif; RING-type zinc-finger, LisH dimerisation motif; RING-type zinc-finger, LisH dimerisation motif
hsd_id_Theobroma_cacao_1571	XP_007032687.2; XP_017971954.1	1004; 951	Pfam	PF00343; PF00343	Carbohydrate phosphorylase; Carbohydrate phosphorylase	IPR000811; IPR000811	Glycosyl transferase, family 35; Glycosyl transferase, family 35
hsd_id_Theobroma_cacao_1572	XP_007032693.1; XP_007037510.2; XP_007045911.1	480; 480; 480	Pfam	PF00984, PF03721, PF03720; PF03721, PF00984, PF03720; PF03720, PF00984, PF03721	UDP-glucose/GDP-mannose dehydrogenase family, central domain, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain, UDP-glucose/GDP-mannose dehydrogenase family, central domain, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain, UDP-glucose/GDP-mannose dehydrogenase family, central domain, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	IPR014026, IPR001732, IPR014027; IPR001732, IPR014026, IPR014027; IPR014027, IPR014026, IPR001732	UDP-glucose/GDP-mannose dehydrogenase, dimerisation, UDP-glucose/GDP-mannose dehydrogenase, N-terminal, UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, N-terminal, UDP-glucose/GDP-mannose dehydrogenase, dimerisation, UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal, UDP-glucose/GDP-mannose dehydrogenase, dimerisation, UDP-glucose/GDP-mannose dehydrogenase, N-terminal
hsd_id_Theobroma_cacao_1573	XP_007032716.2; XP_007032721.2; XP_017974767.1; XP_007037524.1; XP_007037530.2	457; 454; 461; 453; 456	Pfam	PF00201; PF00201; PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_1574	XP_007032789.2; XP_017973989.1	644; 630	Pfam	PF00005, PF00664; PF00005, PF00664	ABC transporter, ABC transporter transmembrane region; ABC transporter, ABC transporter transmembrane region	IPR003439, IPR011527; IPR003439, IPR011527	ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain
hsd_id_Theobroma_cacao_1575	XP_007032845.2; XP_007037617.1; XP_007032846.2; XP_017973107.1; XP_007037621.2; XP_017971664.1	455; 456; 432; 463; 438; 443	Pfam	PF04833; PF04833; PF04833; PF04833; PF04833; PF04833	COBRA-like protein; COBRA-like protein; COBRA-like protein; COBRA-like protein; COBRA-like protein; COBRA-like protein	IPR006918; IPR006918; IPR006918; IPR006918; IPR006918; IPR006918	COBRA, plant; COBRA, plant; COBRA, plant; COBRA, plant; COBRA, plant; COBRA, plant
hsd_id_Theobroma_cacao_1576	XP_007032847.2; XP_007044988.1; XP_007036078.1	86; 89; 87	Pfam	PF06522; PF06522; PF06522	NADH-ubiquinone reductase complex 1 MLRQ subunit; NADH-ubiquinone reductase complex 1 MLRQ subunit; NADH-ubiquinone reductase complex 1 MLRQ subunit	IPR010530; IPR010530; IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit; NADH-ubiquinone reductase complex 1 MLRQ subunit; NADH-ubiquinone reductase complex 1 MLRQ subunit
hsd_id_Theobroma_cacao_1577	XP_007032848.1; XP_007045812.2; XP_007042450.2; XP_007047287.1; XP_007047314.2	363; 368; 399; 423; 425	Pfam	; ; ; ; 	; ; ; ; 	; ; ; ; 	; ; ; ; 
hsd_id_Theobroma_cacao_1578	XP_007032850.2; XP_007045811.2	465; 467	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_1579	XP_007032852.1; XP_007037627.2; XP_007045810.2; XP_017977623.1	364; 362; 362; 430	Pfam	PF03214; PF03214; PF03214; PF03214	Reversibly glycosylated polypeptide; Reversibly glycosylated polypeptide; Reversibly glycosylated polypeptide; Reversibly glycosylated polypeptide	IPR037595; IPR037595; IPR037595; IPR037595	Reversibly glycosylated polypeptide family; Reversibly glycosylated polypeptide family; Reversibly glycosylated polypeptide family; Reversibly glycosylated polypeptide family
hsd_id_Theobroma_cacao_1580	XP_007032894.2; XP_007037671.2; XP_007045745.2; XP_007046006.2; XP_007045744.2; XP_017970165.1; XP_007045740.2; XP_007045742.2	511; 508; 518; 503; 527; 507; 471; 503	Pfam	PF10250; PF10250; PF10250; PF10250; PF10250; PF10250; PF10250; PF10250	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase	IPR019378; IPR019378; IPR019378; IPR019378; IPR019378; IPR019378; IPR019378; IPR019378	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase
hsd_id_Theobroma_cacao_1581	XP_007032901.2; XP_017971511.1; XP_007037675.2	625; 641; 633	Pfam	PF00454; PF00454; PF00454	Phosphatidylinositol 3- and 4-kinase; Phosphatidylinositol 3- and 4-kinase; Phosphatidylinositol 3- and 4-kinase	IPR000403; IPR000403; IPR000403	Phosphatidylinositol 3-/4-kinase, catalytic domain; Phosphatidylinositol 3-/4-kinase, catalytic domain; Phosphatidylinositol 3-/4-kinase, catalytic domain
hsd_id_Theobroma_cacao_1582	XP_007032908.1; XP_017974849.1	357; 356	Pfam	PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_1583	XP_007032928.2; XP_017981581.1	464; 483	Pfam	PF01490; PF01490	Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein	IPR013057; IPR013057	Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain
hsd_id_Theobroma_cacao_1584	XP_007032948.1; XP_007045684.1; XP_017972824.1	485; 485; 489	Pfam	PF03446, PF00393; PF00393, PF03446; PF00393, PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase, 6-phosphogluconate dehydrogenase, C-terminal domain; 6-phosphogluconate dehydrogenase, C-terminal domain, NAD binding domain of 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase, C-terminal domain, NAD binding domain of 6-phosphogluconate dehydrogenase	IPR006115, IPR006114; IPR006114, IPR006115; IPR006114, IPR006115	6-phosphogluconate dehydrogenase, NADP-binding, 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, C-terminal, 6-phosphogluconate dehydrogenase, NADP-binding; 6-phosphogluconate dehydrogenase, C-terminal, 6-phosphogluconate dehydrogenase, NADP-binding
hsd_id_Theobroma_cacao_1585	XP_007032961.2; XP_007032962.1; XP_007032963.1; XP_007011646.2; XP_017982122.1	100; 98; 104; 178; 167	Pfam	; ; ; ; 	; ; ; ; 	; ; ; ; 	; ; ; ; 
hsd_id_Theobroma_cacao_1586	XP_007032978.2; XP_007038725.2; XP_007051815.1	450; 453; 449	Pfam	PF01764, PF03893; PF01764, PF03893; PF01764, PF03893	Lipase (class 3), Lipase 3 N-terminal region; Lipase (class 3), Lipase 3 N-terminal region; Lipase (class 3), Lipase 3 N-terminal region	IPR002921, IPR005592; IPR002921, IPR005592; IPR002921, IPR005592	Fungal lipase-like domain, Mono-/di-acylglycerol lipase, N-terminal; Fungal lipase-like domain, Mono-/di-acylglycerol lipase, N-terminal; Fungal lipase-like domain, Mono-/di-acylglycerol lipase, N-terminal
hsd_id_Theobroma_cacao_1587	XP_007032993.2; XP_017970012.1	190; 175	Pfam	PF00538; PF00538	linker histone H1 and H5 family; linker histone H1 and H5 family	IPR005818; IPR005818	Linker histone H1/H5, domain H15; Linker histone H1/H5, domain H15
hsd_id_Theobroma_cacao_1588	XP_007033008.2; XP_017971583.1	577; 582	Pfam	PF10151; PF10151	TMEM214, C-terminal, caspase 4 activator; TMEM214, C-terminal, caspase 4 activator	IPR019308; IPR019308	Transmembrane protein 214; Transmembrane protein 214
hsd_id_Theobroma_cacao_1589	XP_007033017.2; XP_017974774.1; XP_007047029.2	361; 362; 370	Pfam	PF00348; PF00348; PF00348	Polyprenyl synthetase; Polyprenyl synthetase; Polyprenyl synthetase	IPR000092; IPR000092; IPR000092	Polyprenyl synthetase; Polyprenyl synthetase; Polyprenyl synthetase
hsd_id_Theobroma_cacao_1590	XP_007033029.2; XP_017971817.1; XP_017977420.1	148; 137; 138	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_1591	XP_007033034.2; XP_017974048.1; XP_017972087.1	165; 181; 175	Pfam	PF00168; PF00168; PF00168	C2 domain; C2 domain; C2 domain	IPR000008; IPR000008; IPR000008	C2 domain; C2 domain; C2 domain
hsd_id_Theobroma_cacao_1592	XP_007033077.1; XP_007045105.2	219; 227	Pfam	PF14009; PF14009	Domain of unknown function (DUF4228); Domain of unknown function (DUF4228)	IPR025322; IPR025322	Protein of unknown function DUF4228, plant; Protein of unknown function DUF4228, plant
hsd_id_Theobroma_cacao_1593	XP_007033106.2; XP_007040931.2; XP_007051119.2	316; 290; 302	Pfam	PF00574; PF00574; PF00574	Clp protease; Clp protease; Clp protease	IPR023562; IPR023562; IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA; Clp protease proteolytic subunit /Translocation-enhancing protein TepA; Clp protease proteolytic subunit /Translocation-enhancing protein TepA
hsd_id_Theobroma_cacao_1594	XP_007033111.2; XP_007045071.1; XP_007045072.2; XP_007033112.1; XP_007033113.2	146; 151; 148; 146; 182	Pfam	; ; ; ; 	; ; ; ; 	; ; ; ; 	; ; ; ; 
hsd_id_Theobroma_cacao_1595	XP_007033116.1; XP_007045070.1	449; 450	Pfam	PF03547; PF03547	Membrane transport protein; Membrane transport protein	IPR004776; IPR004776	Membrane transport protein; Membrane transport protein
hsd_id_Theobroma_cacao_1596	XP_007033135.1; XP_017970071.1	179; 177	Pfam	PF14009; PF14009	Domain of unknown function (DUF4228); Domain of unknown function (DUF4228)	IPR025322; IPR025322	Protein of unknown function DUF4228, plant; Protein of unknown function DUF4228, plant
hsd_id_Theobroma_cacao_1597	XP_007033143.2; XP_017974543.1; XP_017975756.1	1181; 1154; 1154	Pfam	PF00931, PF18052; PF18052, PF00931; PF00931, PF18052	NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain; NB-ARC domain, Rx N-terminal domain	IPR002182, IPR041118; IPR041118, IPR002182; IPR002182, IPR041118	NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC; NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_1598	XP_007033170.2; XP_017972081.1; XP_017971615.1; XP_017972676.1	371; 433; 330; 317	Pfam	PF01569; PF01569; PF01569; PF01569	PAP2 superfamily; PAP2 superfamily; PAP2 superfamily; PAP2 superfamily	IPR000326; IPR000326; IPR000326; IPR000326	Phosphatidic acid phosphatase type 2/haloperoxidase; Phosphatidic acid phosphatase type 2/haloperoxidase; Phosphatidic acid phosphatase type 2/haloperoxidase; Phosphatidic acid phosphatase type 2/haloperoxidase
hsd_id_Theobroma_cacao_1599	XP_007033191.2; XP_017972219.1	443; 424	Pfam	PF13378, PF02746; PF13378, PF02746	Enolase C-terminal domain-like, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; Enolase C-terminal domain-like, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain	IPR029065, IPR013341; IPR029065, IPR013341	Enolase C-terminal domain-like, Mandelate racemase/muconate lactonizing enzyme, N-terminal domain; Enolase C-terminal domain-like, Mandelate racemase/muconate lactonizing enzyme, N-terminal domain
hsd_id_Theobroma_cacao_1600	XP_007033193.2; XP_017972353.1; XP_017970603.1	118; 92; 95	Pfam	PF14368; PF14368; PF14368	Probable lipid transfer; Probable lipid transfer; Probable lipid transfer	IPR016140; IPR016140; IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
hsd_id_Theobroma_cacao_1601	XP_007033197.2; XP_017974362.1	427; 406	Pfam	PF07722; PF07722	Peptidase C26; Peptidase C26	IPR011697; IPR011697	Peptidase C26; Peptidase C26
hsd_id_Theobroma_cacao_1602	XP_007033234.2; XP_007035730.1; XP_007051057.1	213; 197; 193	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_1603	XP_007033236.2; XP_017977813.1; XP_007036463.2	244; 214; 273	Pfam	PF01195; PF01195; PF01195	Peptidyl-tRNA hydrolase; Peptidyl-tRNA hydrolase; Peptidyl-tRNA hydrolase	IPR001328; IPR001328; IPR001328	Peptidyl-tRNA hydrolase; Peptidyl-tRNA hydrolase; Peptidyl-tRNA hydrolase
hsd_id_Theobroma_cacao_1604	XP_007033245.1; XP_017973721.1	233; 237	Pfam	PF13398; PF13398	Peptidase M50B-like; Peptidase M50B-like	-; -	-; -
hsd_id_Theobroma_cacao_1605	XP_007033252.2; XP_007036547.1	191; 191	Pfam	PF01251; PF01251	Ribosomal protein S7e; Ribosomal protein S7e	IPR000554; IPR000554	Ribosomal protein S7e; Ribosomal protein S7e
hsd_id_Theobroma_cacao_1606	XP_007033264.2; XP_007044319.1	374; 393	Pfam	PF12146; PF12146	Serine aminopeptidase, S33; Serine aminopeptidase, S33	IPR022742; IPR022742	Serine aminopeptidase, S33; Serine aminopeptidase, S33
hsd_id_Theobroma_cacao_1607	XP_007033265.2; XP_017971881.1; XP_007036526.2	176; 183; 163	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_1608	XP_007033286.2; XP_017970799.1; XP_017974551.1	502; 449; 474	Pfam	PF03398; PF03398; PF03398	Regulator of Vps4 activity in the MVB pathway; Regulator of Vps4 activity in the MVB pathway; Regulator of Vps4 activity in the MVB pathway	IPR005061; IPR005061; IPR005061	Vacuolar protein sorting-associated protein Ist1; Vacuolar protein sorting-associated protein Ist1; Vacuolar protein sorting-associated protein Ist1
hsd_id_Theobroma_cacao_1609	XP_007033296.2; XP_017970185.1	344; 337	Pfam	PF07859; PF07859	alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR013094; IPR013094	Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3
hsd_id_Theobroma_cacao_1610	XP_007033297.1; XP_017973939.1	535; 535	Pfam	PF00118; PF00118	TCP-1/cpn60 chaperonin family; TCP-1/cpn60 chaperonin family	IPR002423; IPR002423	Chaperonin Cpn60/TCP-1 family; Chaperonin Cpn60/TCP-1 family
hsd_id_Theobroma_cacao_1611	XP_007033340.2; XP_007036420.2	636; 642	Pfam	PF01008; PF01008	Initiation factor 2 subunit family; Initiation factor 2 subunit family	IPR000649; IPR000649	Initiation factor 2B-related; Initiation factor 2B-related
hsd_id_Theobroma_cacao_1612	XP_007033348.2; XP_017970734.1	601; 598	Pfam	PF12701, PF09532; PF12701, PF09532	Scd6-like Sm domain, FDF domain; Scd6-like Sm domain, FDF domain	IPR025609, IPR019050; IPR025609, IPR019050	Lsm14-like, N-terminal, FDF domain; Lsm14-like, N-terminal, FDF domain
hsd_id_Theobroma_cacao_1613	XP_007033367.2; XP_017974716.1; XP_007045354.2	76; 74; 148	Pfam	PF00304; PF00304; PF00304	Gamma-thionin family; Gamma-thionin family; Gamma-thionin family	-; -; -	-; -; -
hsd_id_Theobroma_cacao_1614	XP_007033398.2; XP_017970572.1; XP_017978855.1	751; 754; 741	Pfam	PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1615	XP_007033404.2; XP_017975557.1	444; 425	Pfam	PF13839, PF14416; PF13839, PF14416	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain	IPR026057, IPR025846; IPR026057, IPR025846	PC-Esterase, PMR5 N-terminal domain; PC-Esterase, PMR5 N-terminal domain
hsd_id_Theobroma_cacao_1616	XP_007033415.2; XP_017984023.1	287; 287	Pfam	PF13460; PF13460	NAD(P)H-binding; NAD(P)H-binding	IPR016040; IPR016040	NAD(P)-binding domain; NAD(P)-binding domain
hsd_id_Theobroma_cacao_1617	XP_007033416.1; XP_007033439.1	66; 67	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1618	XP_007033446.2; XP_017984560.1; XP_017981960.1	462; 435; 409	Pfam	PF13920; PF13920; PF13920	Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger)	-; -; -	-; -; -
hsd_id_Theobroma_cacao_1619	XP_007033454.2; XP_007033455.2; XP_007048206.2; XP_017984302.1	134; 134; 133; 134	Pfam	PF05617; PF05617; PF05617; PF05617	Prolamin-like; Prolamin-like; Prolamin-like; Prolamin-like	IPR008502; IPR008502; IPR008502; IPR008502	Prolamin-like domain; Prolamin-like domain; Prolamin-like domain; Prolamin-like domain
hsd_id_Theobroma_cacao_1620	XP_007033457.1; XP_017970069.1	304; 323	Pfam	PF06697; PF06697	Protein of unknown function (DUF1191); Protein of unknown function (DUF1191)	IPR010605; IPR010605	Protein of unknown function DUF1191; Protein of unknown function DUF1191
hsd_id_Theobroma_cacao_1621	XP_007033474.2; XP_007040311.1	229; 229	Pfam	PF01991; PF01991	ATP synthase (E/31 kDa) subunit; ATP synthase (E/31 kDa) subunit	IPR002842; IPR002842	V-type ATPase subunit E; V-type ATPase subunit E
hsd_id_Theobroma_cacao_1622	XP_007033490.2; XP_017984565.1	139; 162	Pfam	PF00085; PF00085	Thioredoxin; Thioredoxin	IPR013766; IPR013766	Thioredoxin domain; Thioredoxin domain
hsd_id_Theobroma_cacao_1623	XP_007033541.2; XP_017985061.1; XP_017982060.1; XP_017969862.1; XP_017981138.1	198; 195; 197; 188; 199	Pfam	PF13639; PF13639; PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_1624	XP_007033544.2; XP_007033545.2	122; 119	Pfam	PF00234; PF00234	Protease inhibitor/seed storage/LTP family; Protease inhibitor/seed storage/LTP family	IPR016140; IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
hsd_id_Theobroma_cacao_1625	XP_007033549.2; XP_017974829.1	115; 122	Pfam	PF00234; PF00234	Protease inhibitor/seed storage/LTP family; Protease inhibitor/seed storage/LTP family	IPR016140; IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
hsd_id_Theobroma_cacao_1626	XP_007033558.2; XP_007017068.2	890; 836	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1627	XP_007033596.1; XP_007048076.2	479; 490	Pfam	PF00202; PF00202	Aminotransferase class-III; Aminotransferase class-III	IPR005814; IPR005814	Aminotransferase class-III; Aminotransferase class-III
hsd_id_Theobroma_cacao_1628	XP_007033621.1; XP_007033626.2; XP_017975041.1; XP_017975359.1; XP_017974563.1; XP_017977756.1; XP_017977584.1; XP_017982586.1	350; 349; 349; 347; 349; 343; 346; 346	Pfam	PF16884, PF00107; PF00107, PF16884; PF00107, PF16884; PF00107, PF16884; PF00107, PF16884; PF16884, PF00107; PF00107, PF16884; PF16884, PF00107	N-terminal domain of oxidoreductase, Zinc-binding dehydrogenase; Zinc-binding dehydrogenase, N-terminal domain of oxidoreductase; Zinc-binding dehydrogenase, N-terminal domain of oxidoreductase; Zinc-binding dehydrogenase, N-terminal domain of oxidoreductase; Zinc-binding dehydrogenase, N-terminal domain of oxidoreductase; N-terminal domain of oxidoreductase, Zinc-binding dehydrogenase; Zinc-binding dehydrogenase, N-terminal domain of oxidoreductase; N-terminal domain of oxidoreductase, Zinc-binding dehydrogenase	IPR041694, IPR013149; IPR013149, IPR041694; IPR013149, IPR041694; IPR013149, IPR041694; IPR013149, IPR041694; IPR041694, IPR013149; IPR013149, IPR041694; IPR041694, IPR013149	Oxidoreductase, N-terminal domain, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, C-terminal, Oxidoreductase, N-terminal domain; Alcohol dehydrogenase, C-terminal, Oxidoreductase, N-terminal domain; Alcohol dehydrogenase, C-terminal, Oxidoreductase, N-terminal domain; Alcohol dehydrogenase, C-terminal, Oxidoreductase, N-terminal domain; Oxidoreductase, N-terminal domain, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, C-terminal, Oxidoreductase, N-terminal domain; Oxidoreductase, N-terminal domain, Alcohol dehydrogenase, C-terminal
hsd_id_Theobroma_cacao_1629	XP_007033640.1; XP_017977501.1	757; 758	Pfam	PF07766; PF07766	LETM1-like protein; LETM1-like protein	IPR011685; IPR011685	LETM1-like; LETM1-like
hsd_id_Theobroma_cacao_1630	XP_007033645.2; XP_007033647.2; XP_007045533.2; XP_017972910.1; XP_007049526.1; XP_017976433.1; XP_007044514.2; XP_017974917.1; XP_017974918.1; XP_017975813.1; XP_007036115.2	455; 458; 457; 459; 459; 459; 462; 470; 442; 452; 456	Pfam	PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_1631	XP_007033652.2; XP_007047510.2	418; 383	Pfam	PF02135, PF00651; PF02135, PF00651	TAZ zinc finger, BTB/POZ domain; TAZ zinc finger, BTB/POZ domain	IPR000197, IPR000210; IPR000197, IPR000210	Zinc finger, TAZ-type, BTB/POZ domain; Zinc finger, TAZ-type, BTB/POZ domain
hsd_id_Theobroma_cacao_1632	XP_007033676.2; XP_017975262.1; XP_017974561.1	1161; 1164; 1110	Pfam	PF00931, PF18052; PF00931, PF18052; PF18052, PF00931	NB-ARC domain, Rx N-terminal domain; NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain	IPR002182, IPR041118; IPR002182, IPR041118; IPR041118, IPR002182	NB-ARC, Rx, N-terminal; NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC
hsd_id_Theobroma_cacao_1633	XP_007033680.2; XP_017981570.1	524; 440	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1634	XP_007033700.2; XP_017969788.1	298; 300	Pfam	PF17144, PF14204; PF14204, PF17144	Ribosomal large subunit proteins 60S L5, and 50S L18, Ribosomal L18 C-terminal region; Ribosomal L18 C-terminal region, Ribosomal large subunit proteins 60S L5, and 50S L18	IPR005485, IPR025607; IPR025607, IPR005485	Ribosomal protein L5 eukaryotic/L18 archaeal, Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal; Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal, Ribosomal protein L5 eukaryotic/L18 archaeal
hsd_id_Theobroma_cacao_1635	XP_007033716.2; XP_007041243.2	898; 954	Pfam	PF06241; PF06241	Castor and Pollux, part of voltage-gated ion channel; Castor and Pollux, part of voltage-gated ion channel	IPR010420; IPR010420	CASTOR/POLLUX/SYM8 ion channel, conserved domain; CASTOR/POLLUX/SYM8 ion channel, conserved domain
hsd_id_Theobroma_cacao_1636	XP_007033721.1; XP_017976659.1	184; 189	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1637	XP_007033759.2; XP_017979693.1	396; 348	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1638	XP_007033799.2; XP_007039247.2; XP_017974067.1	249; 245; 272	Pfam	PF04654; PF04654; PF04654	Protein of unknown function, DUF599; Protein of unknown function, DUF599; Protein of unknown function, DUF599	IPR006747; IPR006747; IPR006747	Protein of unknown function DUF599; Protein of unknown function DUF599; Protein of unknown function DUF599
hsd_id_Theobroma_cacao_1639	XP_007033810.2; XP_017973045.1	254; 254	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1640	XP_007033865.2; XP_007033867.2	465; 467	Pfam	PF02458; PF02458	Transferase family; Transferase family	IPR003480; IPR003480	Transferase; Transferase
hsd_id_Theobroma_cacao_1641	XP_007033876.1; XP_007047538.1	457; 505	Pfam	PF03514; PF03514	GRAS domain family; GRAS domain family	IPR005202; IPR005202	Transcription factor GRAS; Transcription factor GRAS
hsd_id_Theobroma_cacao_1642	XP_007033879.2; XP_017974319.1; XP_017974569.1; XP_017974523.1	386; 386; 386; 386	Pfam	PF00657; PF00657; PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087; IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_1643	XP_007033896.2; XP_007049464.2	970; 912	Pfam	PF07744, PF00076; PF00076, PF07744	SPOC domain, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), SPOC domain	IPR012921, IPR000504; IPR000504, IPR012921	Spen paralogue and orthologue SPOC, C-terminal, RNA recognition motif domain; RNA recognition motif domain, Spen paralogue and orthologue SPOC, C-terminal
hsd_id_Theobroma_cacao_1644	XP_007033903.2; XP_007017082.1; XP_017981081.1; XP_007011315.2; XP_007021637.2; XP_007050026.2	412; 395; 336; 373; 335; 298	Pfam	PF00170; PF00170; PF00170; PF00170; PF00170; PF00170	bZIP transcription factor; bZIP transcription factor; bZIP transcription factor; bZIP transcription factor; bZIP transcription factor; bZIP transcription factor	IPR004827; IPR004827; IPR004827; IPR004827; IPR004827; IPR004827	Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain
hsd_id_Theobroma_cacao_1645	XP_007033923.2; XP_017980783.1; XP_007038535.2; XP_017975727.1	328; 358; 348; 386	Pfam	PF00294; PF00294; PF00294; PF00294	pfkB family carbohydrate kinase; pfkB family carbohydrate kinase; pfkB family carbohydrate kinase; pfkB family carbohydrate kinase	IPR011611; IPR011611; IPR011611; IPR011611	Carbohydrate kinase PfkB; Carbohydrate kinase PfkB; Carbohydrate kinase PfkB; Carbohydrate kinase PfkB
hsd_id_Theobroma_cacao_1646	XP_007033935.2; XP_017974334.1; XP_017974711.1; XP_007033939.2	254; 258; 245; 244	Pfam	PF03101; PF03101; PF03101; PF03101	FAR1 DNA-binding domain; FAR1 DNA-binding domain; FAR1 DNA-binding domain; FAR1 DNA-binding domain	IPR004330; IPR004330; IPR004330; IPR004330	FAR1 DNA binding domain; FAR1 DNA binding domain; FAR1 DNA binding domain; FAR1 DNA binding domain
hsd_id_Theobroma_cacao_1647	XP_007033942.2; XP_007033943.1; XP_007049566.1; XP_007049563.2; XP_017974714.1	207; 211; 216; 218; 216	Pfam	PF03101; PF03101; PF03101; PF03101; PF03101	FAR1 DNA-binding domain; FAR1 DNA-binding domain; FAR1 DNA-binding domain; FAR1 DNA-binding domain; FAR1 DNA-binding domain	IPR004330; IPR004330; IPR004330; IPR004330; IPR004330	FAR1 DNA binding domain; FAR1 DNA binding domain; FAR1 DNA binding domain; FAR1 DNA binding domain; FAR1 DNA binding domain
hsd_id_Theobroma_cacao_1648	XP_007034023.2; XP_017975933.1; XP_017974414.1; XP_017975546.1; XP_017984458.1; XP_017984462.1; XP_017984459.1; XP_017984215.1; XP_017984259.1; XP_017984256.1; XP_007035049.2	679; 673; 671; 669; 674; 662; 668; 671; 677; 574; 528	Pfam	PF03107; PF03107; PF03107; PF03107; PF03107; PF03107; PF03107; PF03107; PF03107; PF03107; PF03107	C1 domain; C1 domain; C1 domain; C1 domain; C1 domain; C1 domain; C1 domain; C1 domain; C1 domain; C1 domain; C1 domain	IPR004146; IPR004146; IPR004146; IPR004146; IPR004146; IPR004146; IPR004146; IPR004146; IPR004146; IPR004146; IPR004146	DC1; DC1; DC1; DC1; DC1; DC1; DC1; DC1; DC1; DC1; DC1
hsd_id_Theobroma_cacao_1649	XP_007034045.2; XP_017980884.1; XP_017976672.1; XP_017975210.1	368; 362; 366; 367	Pfam	PF07714; PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1650	XP_007034072.2; XP_007034076.2; XP_017974574.1	282; 287; 278	Pfam	PF02365; PF02365; PF02365	No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein	IPR003441; IPR003441; IPR003441	NAC domain; NAC domain; NAC domain
hsd_id_Theobroma_cacao_1651	XP_007034086.1; XP_017970882.1; XP_007046251.2	603; 584; 584	Pfam	PF00854; PF00854; PF00854	POT family; POT family; POT family	IPR000109; IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_1652	XP_007034166.1; XP_017984877.1	772; 761	Pfam	PF04811, PF08033, PF04815, PF00626, PF04810; PF04810, PF08033, PF00626, PF04811, PF04815	Sec23/Sec24 trunk domain, Sec23/Sec24 beta-sandwich domain, Sec23/Sec24 helical domain, Gelsolin repeat, Sec23/Sec24 zinc finger; Sec23/Sec24 zinc finger, Sec23/Sec24 beta-sandwich domain, Gelsolin repeat, Sec23/Sec24 trunk domain, Sec23/Sec24 helical domain	IPR006896, IPR012990, IPR006900, IPR007123, IPR006895; IPR006895, IPR012990, IPR007123, IPR006896, IPR006900	Sec23/Sec24, trunk domain, Sec23/Sec24 beta-sandwich, Sec23/Sec24, helical domain, Gelsolin-like domain, Zinc finger, Sec23/Sec24-type; Zinc finger, Sec23/Sec24-type, Sec23/Sec24 beta-sandwich, Gelsolin-like domain, Sec23/Sec24, trunk domain, Sec23/Sec24, helical domain
hsd_id_Theobroma_cacao_1653	XP_007034175.2; XP_007034178.2	295; 294	Pfam	PF04278; PF04278	Tic22-like family; Tic22-like family	IPR007378; IPR007378	Tic22-like; Tic22-like
hsd_id_Theobroma_cacao_1654	XP_007034186.2; XP_017975373.1	465; 463	Pfam	PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_1655	XP_007034239.1; XP_007041894.2; XP_007046689.2; XP_017981742.1; XP_017980823.1	189; 113; 164; 168; 168	Pfam	PF00226; PF00226; PF00226; PF00226; PF00226	DnaJ domain; DnaJ domain; DnaJ domain; DnaJ domain; DnaJ domain	IPR001623; IPR001623; IPR001623; IPR001623; IPR001623	DnaJ domain; DnaJ domain; DnaJ domain; DnaJ domain; DnaJ domain
hsd_id_Theobroma_cacao_1656	XP_007034290.1; XP_017978968.1	254; 255	Pfam	PF05875; PF05875	Ceramidase; Ceramidase	IPR008901; IPR008901	Alkaline ceramidase; Alkaline ceramidase
hsd_id_Theobroma_cacao_1657	XP_007034322.2; XP_007049733.2	412; 317	Pfam	PF09409, PF00627; PF00627, PF09409	PUB domain, UBA/TS-N domain; UBA/TS-N domain, PUB domain	IPR018997, IPR015940; IPR015940, IPR018997	PUB domain, Ubiquitin-associated domain; Ubiquitin-associated domain, PUB domain
hsd_id_Theobroma_cacao_1658	XP_007034347.2; XP_007042018.1	639; 732	Pfam	PF02784; PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain	IPR022644; IPR022644	Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal
hsd_id_Theobroma_cacao_1659	XP_007034383.1; XP_007049776.1	206; 206	Pfam	PF00572; PF00572	Ribosomal protein L13; Ribosomal protein L13	IPR005822; IPR005822	Ribosomal protein L13; Ribosomal protein L13
hsd_id_Theobroma_cacao_1660	XP_007034385.2; XP_007034386.2	1009; 1009	Pfam	PF13646, PF17781, PF18004, PF01851; PF17781, PF01851, PF18004, PF13646	HEAT repeats, RPN1/RPN2 N-terminal domain, 26S proteasome regulatory subunit RPN2 C-terminal domain, Proteasome/cyclosome repeat; RPN1/RPN2 N-terminal domain, Proteasome/cyclosome repeat, 26S proteasome regulatory subunit RPN2 C-terminal domain, HEAT repeats	-, IPR040892, IPR040623, IPR002015; IPR040892, IPR002015, IPR040623, -	-, RPN1, N-terminal, 26S proteasome regulatory subunit RPN2, C-terminal, Proteasome/cyclosome repeat; RPN1, N-terminal, Proteasome/cyclosome repeat, 26S proteasome regulatory subunit RPN2, C-terminal, -
hsd_id_Theobroma_cacao_1661	XP_007034389.2; XP_007049786.2; XP_007042389.1	264; 234; 210	Pfam	PF02234; PF02234; PF02234	Cyclin-dependent kinase inhibitor; Cyclin-dependent kinase inhibitor; Cyclin-dependent kinase inhibitor	IPR003175; IPR003175; IPR003175	Cyclin-dependent kinase inhibitor domain; Cyclin-dependent kinase inhibitor domain; Cyclin-dependent kinase inhibitor domain
hsd_id_Theobroma_cacao_1662	XP_007034482.1; XP_007034483.1	144; 144	Pfam	PF05938; PF05938	Plant self-incompatibility protein S1; Plant self-incompatibility protein S1	IPR010264; IPR010264	Plant self-incompatibility S1; Plant self-incompatibility S1
hsd_id_Theobroma_cacao_1663	XP_007034487.2; XP_017977581.1	1106; 1122	Pfam	PF00069, PF08263, PF13855; PF08263, PF13855, PF00069	Protein kinase domain, Leucine rich repeat N-terminal domain, Leucine rich repeat; Leucine rich repeat N-terminal domain, Leucine rich repeat, Protein kinase domain	IPR000719, IPR013210, IPR001611; IPR013210, IPR001611, IPR000719	Protein kinase domain, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat; Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Protein kinase domain
hsd_id_Theobroma_cacao_1664	XP_007034572.1; XP_017984627.1; XP_017973379.1; XP_017980348.1; XP_007045138.2	563; 620; 607; 601; 495	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1665	XP_007034580.2; XP_017975318.1	239; 239	Pfam	PF01738; PF01738	Dienelactone hydrolase family; Dienelactone hydrolase family	IPR002925; IPR002925	Dienelactone hydrolase; Dienelactone hydrolase
hsd_id_Theobroma_cacao_1666	XP_007034585.2; XP_007050680.2	1325; 1328	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1667	XP_007034593.1; XP_007050663.1; XP_017970497.1; XP_017970490.1; XP_017970498.1; XP_017970491.1	326; 322; 281; 300; 278; 300	Pfam	PF01715; PF01715; PF01715; PF01715; PF01715; PF01715	IPP transferase; IPP transferase; IPP transferase; IPP transferase; IPP transferase; IPP transferase	-; -; -; -; -; -	-; -; -; -; -; -
hsd_id_Theobroma_cacao_1668	XP_007034633.1; XP_007050652.2	236; 236	Pfam	PF12481; PF12481	Aluminium induced protein; Aluminium induced protein	IPR024286; IPR024286	Domain of unknown function DUF3700; Domain of unknown function DUF3700
hsd_id_Theobroma_cacao_1669	XP_007034636.2; XP_017977847.1	256; 256	Pfam	PF00808; PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone	IPR003958; IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain
hsd_id_Theobroma_cacao_1670	XP_007034659.2; XP_017981384.1; XP_017969626.1; XP_007042146.2; XP_007049452.2	522; 527; 524; 526; 518	Pfam	PF00483; PF00483; PF00483; PF00483; PF00483	Nucleotidyl transferase; Nucleotidyl transferase; Nucleotidyl transferase; Nucleotidyl transferase; Nucleotidyl transferase	IPR005835; IPR005835; IPR005835; IPR005835; IPR005835	Nucleotidyl transferase domain; Nucleotidyl transferase domain; Nucleotidyl transferase domain; Nucleotidyl transferase domain; Nucleotidyl transferase domain
hsd_id_Theobroma_cacao_1671	XP_007034682.2; XP_007050619.2	537; 537	Pfam	PF13943, PF13516; PF13943, PF13516	WPP domain, Leucine Rich repeat; WPP domain, Leucine Rich repeat	IPR025265, IPR001611; IPR025265, IPR001611	WPP domain, Leucine-rich repeat; WPP domain, Leucine-rich repeat
hsd_id_Theobroma_cacao_1672	XP_007034683.1; XP_017971812.1; XP_017984526.1	144; 146; 129	Pfam	PF00380; PF00380; PF00380	Ribosomal protein S9/S16; Ribosomal protein S9/S16; Ribosomal protein S9/S16	IPR000754; IPR000754; IPR000754	Ribosomal protein S9; Ribosomal protein S9; Ribosomal protein S9
hsd_id_Theobroma_cacao_1673	XP_007034724.1; XP_007050585.2	210; 204	Pfam	PF02531; PF02531	PsaD; PsaD	IPR003685; IPR003685	Photosystem I PsaD; Photosystem I PsaD
hsd_id_Theobroma_cacao_1674	XP_007034740.2; XP_017974653.1; XP_017974651.1; XP_017974652.1	644; 670; 670; 670	Pfam	PF02728, PF02727, PF01179; PF02727, PF02728, PF01179; PF01179, PF02727, PF02728; PF01179, PF02728, PF02727	Copper amine oxidase, N3 domain, Copper amine oxidase, N2 domain, Copper amine oxidase, enzyme domain; Copper amine oxidase, N2 domain, Copper amine oxidase, N3 domain, Copper amine oxidase, enzyme domain; Copper amine oxidase, enzyme domain, Copper amine oxidase, N2 domain, Copper amine oxidase, N3 domain; Copper amine oxidase, enzyme domain, Copper amine oxidase, N3 domain, Copper amine oxidase, N2 domain	IPR015802, IPR015800, IPR015798; IPR015800, IPR015802, IPR015798; IPR015798, IPR015800, IPR015802; IPR015798, IPR015802, IPR015800	Copper amine oxidase, N3-terminal, Copper amine oxidase, N2-terminal, Copper amine oxidase, catalytic domain; Copper amine oxidase, N2-terminal, Copper amine oxidase, N3-terminal, Copper amine oxidase, catalytic domain; Copper amine oxidase, catalytic domain, Copper amine oxidase, N2-terminal, Copper amine oxidase, N3-terminal; Copper amine oxidase, catalytic domain, Copper amine oxidase, N3-terminal, Copper amine oxidase, N2-terminal
hsd_id_Theobroma_cacao_1675	XP_007034745.2; XP_007034747.2	316; 309	Pfam	PF01975; PF01975	Survival protein SurE; Survival protein SurE	IPR002828; IPR002828	Survival protein SurE-like phosphatase/nucleotidase; Survival protein SurE-like phosphatase/nucleotidase
hsd_id_Theobroma_cacao_1676	XP_007034748.2; XP_017977506.1	749; 744	Pfam	PF00069, PF12202; PF00069, PF12202	Protein kinase domain, Oxidative-stress-responsive kinase 1 C-terminal domain; Protein kinase domain, Oxidative-stress-responsive kinase 1 C-terminal domain	IPR000719, IPR024678; IPR000719, IPR024678	Protein kinase domain, Serine/threonine-protein kinase OSR1/WNK, CCT domain; Protein kinase domain, Serine/threonine-protein kinase OSR1/WNK, CCT domain
hsd_id_Theobroma_cacao_1677	XP_007034767.2; XP_007024118.2	213; 295	Pfam	PF04844; PF04844	Transcriptional repressor, ovate; Transcriptional repressor, ovate	IPR006458; IPR006458	Ovate  protein family, C-terminal; Ovate  protein family, C-terminal
hsd_id_Theobroma_cacao_1678	XP_007034779.1; XP_017976173.1	118; 200	Pfam	PF10273; PF10273	Pre-rRNA-processing protein TSR2; Pre-rRNA-processing protein TSR2	IPR019398; IPR019398	Pre-rRNA-processing protein TSR2; Pre-rRNA-processing protein TSR2
hsd_id_Theobroma_cacao_1679	XP_007034794.1; XP_007050556.2	289; 287	Pfam	PF04570; PF04570	zinc-finger of the FCS-type, C2-C2; zinc-finger of the FCS-type, C2-C2	IPR007650; IPR007650	Zf-FLZ domain; Zf-FLZ domain
hsd_id_Theobroma_cacao_1680	XP_007034796.2; XP_017977827.1; XP_017974679.1; XP_017974678.1	171; 179; 169; 186	Pfam	PF13302; PF13302; PF13302; PF13302	Acetyltransferase (GNAT) domain; Acetyltransferase (GNAT) domain; Acetyltransferase (GNAT) domain; Acetyltransferase (GNAT) domain	IPR000182; IPR000182; IPR000182; IPR000182	GNAT domain; GNAT domain; GNAT domain; GNAT domain
hsd_id_Theobroma_cacao_1681	XP_007034802.1; XP_007050550.2; XP_007034804.1; XP_007050551.1; XP_007050548.2	172; 187; 180; 170; 183	Pfam	PF14368; PF14368; PF14368; PF14368; PF14368	Probable lipid transfer; Probable lipid transfer; Probable lipid transfer; Probable lipid transfer; Probable lipid transfer	IPR016140; IPR016140; IPR016140; IPR016140; IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
hsd_id_Theobroma_cacao_1682	XP_007034828.2; XP_017978530.1; XP_007044350.2	345; 344; 327	Pfam	PF02574; PF02574; PF02574	Homocysteine S-methyltransferase; Homocysteine S-methyltransferase; Homocysteine S-methyltransferase	IPR003726; IPR003726; IPR003726	Homocysteine-binding domain; Homocysteine-binding domain; Homocysteine-binding domain
hsd_id_Theobroma_cacao_1683	XP_007034852.2; XP_007050516.2	475; 496	Pfam	PF05703, PF08458; PF08458, PF05703	Auxin canalisation, Plant pleckstrin homology-like region; Plant pleckstrin homology-like region, Auxin canalisation	IPR008546, IPR013666; IPR013666, IPR008546	Domain of unknown function DUF828, Pleckstrin-like, plant; Pleckstrin-like, plant, Domain of unknown function DUF828
hsd_id_Theobroma_cacao_1684	XP_007034862.2; XP_017975039.1	187; 200	Pfam	PF03079; PF03079	ARD/ARD' family; ARD/ARD' family	IPR004313; IPR004313	Acireductone dioxygenase ARD family; Acireductone dioxygenase ARD family
hsd_id_Theobroma_cacao_1685	XP_007034910.2; XP_007050459.1	340; 341	Pfam	PF08241; PF08241	Methyltransferase domain; Methyltransferase domain	IPR013216; IPR013216	Methyltransferase type 11; Methyltransferase type 11
hsd_id_Theobroma_cacao_1686	XP_007034913.1; XP_017983102.1	106; 102	Pfam	PF00631; PF00631	GGL domain; GGL domain	IPR015898; IPR015898	G-protein gamma-like domain; G-protein gamma-like domain
hsd_id_Theobroma_cacao_1687	XP_007034916.1; XP_007050448.2; XP_007042694.2	591; 576; 575	Pfam	PF00224, PF02887; PF00224, PF02887; PF02887, PF00224	Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain; Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain; Pyruvate kinase, alpha/beta domain, Pyruvate kinase, barrel domain	IPR015793, IPR015795; IPR015793, IPR015795; IPR015795, IPR015793	Pyruvate kinase, barrel, Pyruvate kinase, C-terminal; Pyruvate kinase, barrel, Pyruvate kinase, C-terminal; Pyruvate kinase, C-terminal, Pyruvate kinase, barrel
hsd_id_Theobroma_cacao_1688	XP_007034963.2; XP_007050410.2	386; 393	Pfam	PF01544; PF01544	CorA-like Mg2+ transporter protein; CorA-like Mg2+ transporter protein	IPR002523; IPR002523	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB; Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB
hsd_id_Theobroma_cacao_1689	XP_007034974.2; XP_017982850.1	876; 873	Pfam	PF01985; PF01985	CRS1 / YhbY (CRM) domain; CRS1 / YhbY (CRM) domain	IPR001890; IPR001890	RNA-binding, CRM domain; RNA-binding, CRM domain
hsd_id_Theobroma_cacao_1690	XP_007034980.2; XP_007050396.2	152; 152	Pfam	PF00203; PF00203	Ribosomal protein S19; Ribosomal protein S19	IPR002222; IPR002222	Ribosomal protein S19/S15; Ribosomal protein S19/S15
hsd_id_Theobroma_cacao_1691	XP_007035026.2; XP_007035027.2; XP_007035028.2	748; 747; 738	Pfam	PF03552; PF03552; PF03552	Cellulose synthase; Cellulose synthase; Cellulose synthase	IPR005150; IPR005150; IPR005150	Cellulose synthase; Cellulose synthase; Cellulose synthase
hsd_id_Theobroma_cacao_1692	XP_007035054.2; XP_007035055.1	157; 157	Pfam	PF05514; PF05514	HR-like lesion-inducing; HR-like lesion-inducing	IPR008637; IPR008637	HR-like lesion-inducer; HR-like lesion-inducer
hsd_id_Theobroma_cacao_1693	XP_007035115.2; XP_017975591.1	332; 368	Pfam	PF00056, PF02866; PF02866, PF00056	lactate/malate dehydrogenase, NAD binding domain, lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, alpha/beta C-terminal domain, lactate/malate dehydrogenase, NAD binding domain	IPR001236, IPR022383; IPR022383, IPR001236	Lactate/malate dehydrogenase, N-terminal, Lactate/malate dehydrogenase, C-terminal; Lactate/malate dehydrogenase, C-terminal, Lactate/malate dehydrogenase, N-terminal
hsd_id_Theobroma_cacao_1694	XP_007035164.1; XP_007050233.1	132; 134	Pfam	PF01929; PF01929	Ribosomal protein L14; Ribosomal protein L14	IPR002784; IPR002784	Ribosomal protein L14e domain; Ribosomal protein L14e domain
hsd_id_Theobroma_cacao_1695	XP_007035198.2; XP_007050216.2	732; 734	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1696	XP_007035202.2; XP_017984339.1	144; 79	Pfam	PF00830; PF00830	Ribosomal L28 family; Ribosomal L28 family	IPR026569; IPR026569	Ribosomal protein L28/L24; Ribosomal protein L28/L24
hsd_id_Theobroma_cacao_1697	XP_007035224.2; XP_017978601.1; XP_017981578.1; XP_017980060.1; XP_017974657.1	463; 476; 401; 481; 478	Pfam	PF00076; PF00076; PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_1698	XP_007035235.2; XP_017975442.1; XP_017975592.1	263; 235; 237	Pfam	PF05042; PF05042; PF05042	Caleosin related protein; Caleosin related protein; Caleosin related protein	IPR007736; IPR007736; IPR007736	Caleosin-related; Caleosin-related; Caleosin-related
hsd_id_Theobroma_cacao_1699	XP_007050184.1; XP_007035241.1; XP_017971987.1	140; 140; 113	Pfam	PF00238; PF00238; PF00238	Ribosomal protein L14p/L23e; Ribosomal protein L14p/L23e; Ribosomal protein L14p/L23e	IPR000218; IPR000218; IPR000218	Ribosomal protein L14P; Ribosomal protein L14P; Ribosomal protein L14P
hsd_id_Theobroma_cacao_1700	XP_007035247.1; XP_017969735.1	335; 368	Pfam	PF07534; PF07534	TLD; TLD	IPR006571; IPR006571	TLDc domain; TLDc domain
hsd_id_Theobroma_cacao_1701	XP_007035250.2; XP_007050176.1	302; 299	Pfam	PF01657; PF01657	Salt stress response/antifungal; Salt stress response/antifungal	IPR002902; IPR002902	Gnk2-homologous domain; Gnk2-homologous domain
hsd_id_Theobroma_cacao_1702	XP_007035265.2; XP_007037574.2; XP_007037796.2; XP_017977311.1	293; 310; 329; 280	Pfam	PF00076; PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_1703	XP_007035266.2; XP_007050168.2	475; 450	Pfam	PF00076, PF02136; PF00076, PF02136	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Nuclear transport factor 2 (NTF2) domain; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Nuclear transport factor 2 (NTF2) domain	IPR000504, IPR002075; IPR000504, IPR002075	RNA recognition motif domain, Nuclear transport factor 2; RNA recognition motif domain, Nuclear transport factor 2
hsd_id_Theobroma_cacao_1704	XP_007035278.2; XP_007050158.2	307; 308	Pfam	PF02309; PF02309	AUX/IAA family; AUX/IAA family	IPR033389; IPR033389	AUX/IAA domain; AUX/IAA domain
hsd_id_Theobroma_cacao_1705	XP_007035280.1; XP_007035281.2	509; 510	Pfam	PF00330; PF00330	Aconitase family (aconitate hydratase); Aconitase family (aconitate hydratase)	IPR001030; IPR001030	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
hsd_id_Theobroma_cacao_1706	XP_007035325.1; XP_017980107.1	60; 60	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1707	XP_007035330.2; XP_017985415.1	763; 795	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_1708	XP_007035340.2; XP_017972739.1; XP_017972235.1; XP_017971250.1; XP_017977560.1; XP_017981267.1	587; 575; 557; 595; 500; 554	Pfam	PF01373; PF01373; PF01373; PF01373; PF01373; PF01373	Glycosyl hydrolase family 14; Glycosyl hydrolase family 14; Glycosyl hydrolase family 14; Glycosyl hydrolase family 14; Glycosyl hydrolase family 14; Glycosyl hydrolase family 14	IPR001554; IPR001554; IPR001554; IPR001554; IPR001554; IPR001554	Glycoside hydrolase, family 14; Glycoside hydrolase, family 14; Glycoside hydrolase, family 14; Glycoside hydrolase, family 14; Glycoside hydrolase, family 14; Glycoside hydrolase, family 14
hsd_id_Theobroma_cacao_1709	XP_007035350.2; XP_017974623.1	372; 336	Pfam	PF00646; PF00646	F-box domain; F-box domain	IPR001810; IPR001810	F-box domain; F-box domain
hsd_id_Theobroma_cacao_1710	XP_007035357.1; XP_007050515.1	248; 243	Pfam	PF01027; PF01027	Inhibitor of apoptosis-promoting Bax1; Inhibitor of apoptosis-promoting Bax1	IPR006214; IPR006214	Bax inhibitor 1-related; Bax inhibitor 1-related
hsd_id_Theobroma_cacao_1711	XP_007035378.1; XP_007041478.2	146; 225	Pfam	PF01641; PF01641	SelR domain; SelR domain	IPR002579; IPR002579	Peptide methionine sulphoxide reductase MrsB; Peptide methionine sulphoxide reductase MrsB
hsd_id_Theobroma_cacao_1712	XP_007035388.2; XP_017975036.1	971; 878	Pfam	PF02896, PF01326, PF00391; PF01326, PF02896, PF00391	PEP-utilising enzyme, PEP-binding domain, Pyruvate phosphate dikinase, AMP/ATP-binding domain, PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, AMP/ATP-binding domain, PEP-utilising enzyme, PEP-binding domain, PEP-utilising enzyme, mobile domain	IPR000121, IPR002192, IPR008279; IPR002192, IPR000121, IPR008279	PEP-utilising enzyme, C-terminal, Pyruvate phosphate dikinase, AMP/ATP-binding, PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, AMP/ATP-binding, PEP-utilising enzyme, C-terminal, PEP-utilising enzyme, mobile domain
hsd_id_Theobroma_cacao_1713	XP_007035405.2; XP_007035406.2	183; 191	Pfam	PF05078; PF05078	Protein of unknown function (DUF679); Protein of unknown function (DUF679)	IPR007770; IPR007770	Protein DMP; Protein DMP
hsd_id_Theobroma_cacao_1714	XP_007035423.2; XP_017969669.1	471; 489	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_1715	XP_007035462.1; XP_007052122.2; XP_017973170.1; XP_007039707.2; XP_017982237.1	314; 238; 241; 223; 241	Pfam	PF00635; PF00635; PF00635; PF00635; PF00635	MSP (Major sperm protein) domain; MSP (Major sperm protein) domain; MSP (Major sperm protein) domain; MSP (Major sperm protein) domain; MSP (Major sperm protein) domain	IPR000535; IPR000535; IPR000535; IPR000535; IPR000535	Major sperm protein (MSP) domain; Major sperm protein (MSP) domain; Major sperm protein (MSP) domain; Major sperm protein (MSP) domain; Major sperm protein (MSP) domain
hsd_id_Theobroma_cacao_1716	XP_007035485.2; XP_017975096.1; XP_007030685.2; XP_007016748.2	566; 500; 546; 434	Pfam	PF00035; PF00035; PF00035; PF00035	Double-stranded RNA binding motif; Double-stranded RNA binding motif; Double-stranded RNA binding motif; Double-stranded RNA binding motif	IPR014720; IPR014720; IPR014720; IPR014720	Double-stranded RNA-binding domain; Double-stranded RNA-binding domain; Double-stranded RNA-binding domain; Double-stranded RNA-binding domain
hsd_id_Theobroma_cacao_1717	XP_007035517.1; XP_017984043.1; XP_017975113.1	382; 407; 385	Pfam	PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1718	XP_007035532.2; XP_017975199.1; XP_007035542.2; XP_007035536.2; XP_007035537.2; XP_017979750.1	386; 386; 392; 395; 399; 314	Pfam	PF02536; PF02536; PF02536; PF02536; PF02536; PF02536	mTERF; mTERF; mTERF; mTERF; mTERF; mTERF	IPR003690; IPR003690; IPR003690; IPR003690; IPR003690; IPR003690	Transcription termination factor, mitochondrial/chloroplastic; Transcription termination factor, mitochondrial/chloroplastic; Transcription termination factor, mitochondrial/chloroplastic; Transcription termination factor, mitochondrial/chloroplastic; Transcription termination factor, mitochondrial/chloroplastic; Transcription termination factor, mitochondrial/chloroplastic
hsd_id_Theobroma_cacao_1719	XP_007035584.2; XP_017969397.1; XP_017972811.1	441; 463; 460	Pfam	PF05637; PF05637; PF05637	galactosyl transferase GMA12/MNN10 family; galactosyl transferase GMA12/MNN10 family; galactosyl transferase GMA12/MNN10 family	IPR008630; IPR008630; IPR008630	Glycosyltransferase 34; Glycosyltransferase 34; Glycosyltransferase 34
hsd_id_Theobroma_cacao_1720	XP_007035588.2; XP_017984825.1; XP_007041900.2	1286; 1270; 1289	Pfam	PF04548, PF11886; PF11886, PF04548; PF11886, PF04548	AIG1 family, Translocase of chloroplast 159/132, membrane anchor domain; Translocase of chloroplast 159/132, membrane anchor domain, AIG1 family; Translocase of chloroplast 159/132, membrane anchor domain, AIG1 family	IPR006703, IPR024283; IPR024283, IPR006703; IPR024283, IPR006703	AIG1-type guanine nucleotide-binding (G) domain, Translocase of chloroplast 159/132, membrane anchor domain; Translocase of chloroplast 159/132, membrane anchor domain, AIG1-type guanine nucleotide-binding (G) domain; Translocase of chloroplast 159/132, membrane anchor domain, AIG1-type guanine nucleotide-binding (G) domain
hsd_id_Theobroma_cacao_1721	XP_007035624.1; XP_007050935.2	125; 134	Pfam	PF01776; PF01776	Ribosomal L22e protein family; Ribosomal L22e protein family	IPR002671; IPR002671	Ribosomal protein L22e; Ribosomal protein L22e
hsd_id_Theobroma_cacao_1722	XP_007035631.2; XP_017969680.1; XP_017983556.1; XP_017983878.1; XP_017983130.1	725; 782; 724; 724; 716	Pfam	PF00725, PF02737, PF00378; PF00378, PF02737, PF00725; PF02737, PF00725, PF00378; PF00725, PF00378, PF02737; PF00725, PF02737, PF00378	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain, Enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, Enoyl-CoA hydratase/isomerase, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain, Enoyl-CoA hydratase/isomerase	IPR006108, IPR006176, IPR001753; IPR001753, IPR006176, IPR006108; IPR006176, IPR006108, IPR001753; IPR006108, IPR001753, IPR006176; IPR006108, IPR006176, IPR001753	3-hydroxyacyl-CoA dehydrogenase, C-terminal, 3-hydroxyacyl-CoA dehydrogenase, NAD binding, Enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase, 3-hydroxyacyl-CoA dehydrogenase, NAD binding, 3-hydroxyacyl-CoA dehydrogenase, C-terminal; 3-hydroxyacyl-CoA dehydrogenase, NAD binding, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, C-terminal, Enoyl-CoA hydratase/isomerase, 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal, 3-hydroxyacyl-CoA dehydrogenase, NAD binding, Enoyl-CoA hydratase/isomerase
hsd_id_Theobroma_cacao_1723	XP_007035664.2; XP_007051011.2; XP_007036805.2	206; 210; 190	Pfam	PF01280; PF01280; PF01280	Ribosomal protein L19e; Ribosomal protein L19e; Ribosomal protein L19e	IPR000196; IPR000196; IPR000196	Ribosomal protein L19/L19e; Ribosomal protein L19/L19e; Ribosomal protein L19/L19e
hsd_id_Theobroma_cacao_1724	XP_007035708.2; XP_017981059.1; XP_007036594.2; XP_017971821.1	423; 411; 420; 408	Pfam	PF05623; PF05623; PF05623; PF05623	Protein of unknown function (DUF789); Protein of unknown function (DUF789); Protein of unknown function (DUF789); Protein of unknown function (DUF789)	IPR008507; IPR008507; IPR008507; IPR008507	Protein of unknown function DUF789; Protein of unknown function DUF789; Protein of unknown function DUF789; Protein of unknown function DUF789
hsd_id_Theobroma_cacao_1725	XP_007035713.2; XP_007045293.2; XP_017982087.1; XP_017983742.1; XP_007044949.2	681; 676; 703; 626; 581	Pfam	PF00072, PF00249; PF00072, PF00249; PF00249, PF00072; PF00072, PF00249; PF00249, PF00072	Response regulator receiver domain, Myb-like DNA-binding domain; Response regulator receiver domain, Myb-like DNA-binding domain; Myb-like DNA-binding domain, Response regulator receiver domain; Response regulator receiver domain, Myb-like DNA-binding domain; Myb-like DNA-binding domain, Response regulator receiver domain	IPR001789, IPR017930; IPR001789, IPR017930; IPR017930, IPR001789; IPR001789, IPR017930; IPR017930, IPR001789	Signal transduction response regulator, receiver domain, Myb domain; Signal transduction response regulator, receiver domain, Myb domain; Myb domain, Signal transduction response regulator, receiver domain; Signal transduction response regulator, receiver domain, Myb domain; Myb domain, Signal transduction response regulator, receiver domain
hsd_id_Theobroma_cacao_1726	XP_007035731.1; XP_017976593.1	123; 119	Pfam	PF12023; PF12023	Domain of unknown function (DUF3511); Domain of unknown function (DUF3511)	IPR021899; IPR021899	Protein of unknown function DUF3511; Protein of unknown function DUF3511
hsd_id_Theobroma_cacao_1727	XP_007035737.2; XP_007036552.2	505; 502	Pfam	PF08969, PF01398; PF08969, PF01398	USP8 dimerisation domain, JAB1/Mov34/MPN/PAD-1 ubiquitin protease; USP8 dimerisation domain, JAB1/Mov34/MPN/PAD-1 ubiquitin protease	IPR015063, IPR000555; IPR015063, IPR000555	USP8 dimerisation domain, JAB1/MPN/MOV34 metalloenzyme domain; USP8 dimerisation domain, JAB1/MPN/MOV34 metalloenzyme domain
hsd_id_Theobroma_cacao_1728	XP_007035742.2; XP_017971392.1; XP_007046046.2	98; 119; 218	Pfam	PF04667; PF04667; PF04667	cAMP-regulated phosphoprotein/endosulfine conserved region; cAMP-regulated phosphoprotein/endosulfine conserved region; cAMP-regulated phosphoprotein/endosulfine conserved region	IPR006760; IPR006760; IPR006760	Endosulphine; Endosulphine; Endosulphine
hsd_id_Theobroma_cacao_1729	XP_007035744.2; XP_007051080.2; XP_017981654.1; XP_017981866.1; XP_007043027.2; XP_017971971.1; XP_017984227.1	776; 774; 772; 782; 787; 791; 799	Pfam	PF00933, PF01915, PF14310; PF01915, PF00933, PF14310; PF01915, PF00933, PF14310; PF00933, PF01915, PF14310; PF01915, PF14310, PF00933; PF00933, PF01915, PF14310; PF01915, PF14310, PF00933	Glycosyl hydrolase family 3 N terminal domain, Glycosyl hydrolase family 3 C-terminal domain, Fibronectin type III-like domain; Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain, Fibronectin type III-like domain; Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain, Fibronectin type III-like domain; Glycosyl hydrolase family 3 N terminal domain, Glycosyl hydrolase family 3 C-terminal domain, Fibronectin type III-like domain; Glycosyl hydrolase family 3 C-terminal domain, Fibronectin type III-like domain, Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 N terminal domain, Glycosyl hydrolase family 3 C-terminal domain, Fibronectin type III-like domain; Glycosyl hydrolase family 3 C-terminal domain, Fibronectin type III-like domain, Glycosyl hydrolase family 3 N terminal domain	IPR001764, IPR002772, IPR026891; IPR002772, IPR001764, IPR026891; IPR002772, IPR001764, IPR026891; IPR001764, IPR002772, IPR026891; IPR002772, IPR026891, IPR001764; IPR001764, IPR002772, IPR026891; IPR002772, IPR026891, IPR001764	Glycoside hydrolase, family 3, N-terminal, Glycoside hydrolase family 3 C-terminal domain, Fibronectin type III-like domain; Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal, Fibronectin type III-like domain; Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal, Fibronectin type III-like domain; Glycoside hydrolase, family 3, N-terminal, Glycoside hydrolase family 3 C-terminal domain, Fibronectin type III-like domain; Glycoside hydrolase family 3 C-terminal domain, Fibronectin type III-like domain, Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, N-terminal, Glycoside hydrolase family 3 C-terminal domain, Fibronectin type III-like domain; Glycoside hydrolase family 3 C-terminal domain, Fibronectin type III-like domain, Glycoside hydrolase, family 3, N-terminal
hsd_id_Theobroma_cacao_1730	XP_007035751.1; XP_017970975.1	61; 61	Pfam	PF01779; PF01779	Ribosomal L29e protein family; Ribosomal L29e protein family	IPR002673; IPR002673	Ribosomal protein L29e; Ribosomal protein L29e
hsd_id_Theobroma_cacao_1731	XP_007035807.2; XP_017978817.1	1138; 1140	Pfam	PF00989, PF02518, PF01590, PF00360, PF00512, PF08446; PF00989, PF01590, PF08446, PF00360, PF00512, PF02518	PAS fold, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, GAF domain, Phytochrome region, His Kinase A (phospho-acceptor) domain, PAS fold; PAS fold, GAF domain, PAS fold, Phytochrome region, His Kinase A (phospho-acceptor) domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	IPR013767, IPR003594, IPR003018, IPR013515, IPR003661, IPR013654; IPR013767, IPR003018, IPR013654, IPR013515, IPR003661, IPR003594	PAS fold, Histidine kinase/HSP90-like ATPase, GAF domain, Phytochrome, central region, Signal transduction histidine kinase, dimerisation/phosphoacceptor domain, PAS fold-2; PAS fold, GAF domain, PAS fold-2, Phytochrome, central region, Signal transduction histidine kinase, dimerisation/phosphoacceptor domain, Histidine kinase/HSP90-like ATPase
hsd_id_Theobroma_cacao_1732	XP_007035823.2; XP_007035824.2	318; 371	Pfam	PF00179; PF00179	Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme	IPR000608; IPR000608	Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2
hsd_id_Theobroma_cacao_1733	XP_007035858.2; XP_017974170.1	173; 181	Pfam	PF04043; PF04043	Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor	IPR006501; IPR006501	Pectinesterase inhibitor domain; Pectinesterase inhibitor domain
hsd_id_Theobroma_cacao_1734	XP_007035979.2; XP_017972742.1	267; 265	Pfam	PF03908; PF03908	Sec20; Sec20	IPR005606; IPR005606	Sec20; Sec20
hsd_id_Theobroma_cacao_1735	XP_007036040.2; XP_017979128.1	827; 827	Pfam	PF07393; PF07393	Exocyst complex component Sec10; Exocyst complex component Sec10	IPR009976; IPR009976	Exocyst complex component Sec10-like; Exocyst complex component Sec10-like
hsd_id_Theobroma_cacao_1736	XP_007036090.2; XP_017974265.1	388; 376	Pfam	PF02319; PF02319	E2F/DP family winged-helix DNA-binding domain; E2F/DP family winged-helix DNA-binding domain	IPR003316; IPR003316	E2F/DP family, winged-helix DNA-binding domain; E2F/DP family, winged-helix DNA-binding domain
hsd_id_Theobroma_cacao_1737	XP_007036097.2; XP_017981900.1	806; 809	Pfam	PF05089, PF12971, PF12972; PF12971, PF05089, PF12972	Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain, Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain, Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain, Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain, Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain	IPR024733, IPR024240, IPR024732; IPR024240, IPR024733, IPR024732	Alpha-N-acetylglucosaminidase, tim-barrel domain, Alpha-N-acetylglucosaminidase, N-terminal, Alpha-N-acetylglucosaminidase, C-terminal; Alpha-N-acetylglucosaminidase, N-terminal, Alpha-N-acetylglucosaminidase, tim-barrel domain, Alpha-N-acetylglucosaminidase, C-terminal
hsd_id_Theobroma_cacao_1738	XP_007036123.1; XP_007044537.2	179; 172	Pfam	PF14009; PF14009	Domain of unknown function (DUF4228); Domain of unknown function (DUF4228)	IPR025322; IPR025322	Protein of unknown function DUF4228, plant; Protein of unknown function DUF4228, plant
hsd_id_Theobroma_cacao_1739	XP_007036141.1; XP_017975391.1	589; 587	Pfam	PF13365, PF17815; PF13365, PF17815	Trypsin-like peptidase domain, PDZ domain; Trypsin-like peptidase domain, PDZ domain	-, IPR041517; -, IPR041517	-, Protease Do-like, PDZ domain; -, Protease Do-like, PDZ domain
hsd_id_Theobroma_cacao_1740	XP_007036155.1; XP_007040285.1; XP_007051764.1	184; 184; 183	Pfam	PF00179; PF00179; PF00179	Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme	IPR000608; IPR000608; IPR000608	Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2
hsd_id_Theobroma_cacao_1741	XP_007036172.2; XP_017971825.1; XP_017973856.1; XP_007038994.2	351; 346; 352; 373	Pfam	PF01564, PF17284; PF01564, PF17284; PF17284, PF01564; PF17284, PF01564	Spermine/spermidine synthase domain, Spermidine synthase tetramerisation domain; Spermine/spermidine synthase domain, Spermidine synthase tetramerisation domain; Spermidine synthase tetramerisation domain, Spermine/spermidine synthase domain; Spermidine synthase tetramerisation domain, Spermine/spermidine synthase domain	-, IPR035246; -, IPR035246; IPR035246, -; IPR035246, -	-, Spermidine synthase, tetramerisation domain; -, Spermidine synthase, tetramerisation domain; Spermidine synthase, tetramerisation domain, -; Spermidine synthase, tetramerisation domain, -
hsd_id_Theobroma_cacao_1742	XP_007036187.2; XP_017971879.1	628; 682	Pfam	PF03181; PF03181	BURP domain; BURP domain	IPR004873; IPR004873	BURP domain; BURP domain
hsd_id_Theobroma_cacao_1743	XP_007036222.2; XP_017982966.1	242; 239	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1744	XP_007036271.2; XP_017974436.1; XP_017969734.1	692; 619; 633	Pfam	PF17942, PF13589; PF17942, PF13589; PF13589, PF17942	Morc6 ribosomal protein S5 domain 2-like, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Morc6 ribosomal protein S5 domain 2-like, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Morc6 ribosomal protein S5 domain 2-like	IPR041006, -; IPR041006, -; -, IPR041006	Morc, S5 domain 2-like, -; Morc, S5 domain 2-like, -; -, Morc, S5 domain 2-like
hsd_id_Theobroma_cacao_1745	XP_007036328.1; XP_017971874.1	148; 146	Pfam	PF00828; PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A; Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	IPR021131; IPR021131	Ribosomal protein L18e/L15P; Ribosomal protein L18e/L15P
hsd_id_Theobroma_cacao_1746	XP_007036329.2; XP_017971031.1	797; 786	Pfam	PF02727, PF02728, PF01179; PF02727, PF01179, PF02728	Copper amine oxidase, N2 domain, Copper amine oxidase, N3 domain, Copper amine oxidase, enzyme domain; Copper amine oxidase, N2 domain, Copper amine oxidase, enzyme domain, Copper amine oxidase, N3 domain	IPR015800, IPR015802, IPR015798; IPR015800, IPR015798, IPR015802	Copper amine oxidase, N2-terminal, Copper amine oxidase, N3-terminal, Copper amine oxidase, catalytic domain; Copper amine oxidase, N2-terminal, Copper amine oxidase, catalytic domain, Copper amine oxidase, N3-terminal
hsd_id_Theobroma_cacao_1747	XP_007036353.2; XP_007044744.1	429; 428	Pfam	PF00928, PF01217; PF01217, PF00928	Adaptor complexes medium subunit family, Clathrin adaptor complex small chain; Clathrin adaptor complex small chain, Adaptor complexes medium subunit family	IPR028565, IPR022775; IPR022775, IPR028565	Mu homology domain, AP complex, mu/sigma subunit; AP complex, mu/sigma subunit, Mu homology domain
hsd_id_Theobroma_cacao_1748	XP_007036360.2; XP_007044743.2	454; 399	Pfam	PF04864; PF04864	Allinase; Allinase	IPR006948; IPR006948	Alliinase, C-terminal; Alliinase, C-terminal
hsd_id_Theobroma_cacao_1749	XP_007036364.2; XP_017975736.1; XP_007051146.2	778; 781; 867	Pfam	PF05691; PF05691; PF05691	Raffinose synthase or seed imbibition protein Sip1; Raffinose synthase or seed imbibition protein Sip1; Raffinose synthase or seed imbibition protein Sip1	IPR008811; IPR008811; IPR008811	Glycosyl hydrolases 36; Glycosyl hydrolases 36; Glycosyl hydrolases 36
hsd_id_Theobroma_cacao_1750	XP_007036388.1; XP_017975817.1; XP_017975545.1; XP_017971317.1	352; 352; 355; 397	Pfam	PF07714; PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1751	XP_007036429.2; XP_007046317.2	467; 468	Pfam	PF13920, PF10269; PF10269, PF13920	Zinc finger, C3HC4 type (RING finger), Transmembrane Fragile-X-F protein; Transmembrane Fragile-X-F protein, Zinc finger, C3HC4 type (RING finger)	-, IPR019396; IPR019396, -	-, Transmembrane Fragile-X-F-associated protein; Transmembrane Fragile-X-F-associated protein, -
hsd_id_Theobroma_cacao_1752	XP_007036465.2; XP_017971928.1; XP_017985423.1; XP_017971262.1	491; 489; 488; 481	Pfam	PF14541, PF14543; PF14543, PF14541; PF14541, PF14543; PF14543, PF14541	Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal	IPR032799, IPR032861; IPR032861, IPR032799; IPR032799, IPR032861; IPR032861, IPR032799	Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal
hsd_id_Theobroma_cacao_1753	XP_007036470.2; XP_017971844.1; XP_007045235.2; XP_007045225.1; XP_017974850.1; XP_007046275.2; XP_017974447.1; XP_007045234.2; XP_007042410.2; XP_007045231.1; XP_017970627.1; XP_017970673.1; XP_017982958.1	180; 154; 190; 144; 137; 203; 145; 190; 190; 158; 176; 143; 171	Pfam	PF04749; PF04749; PF04749; PF04749; PF04749; PF04749; PF04749; PF04749; PF04749; PF04749; PF04749; PF04749; PF04749	PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family	IPR006461; IPR006461; IPR006461; IPR006461; IPR006461; IPR006461; IPR006461; IPR006461; IPR006461; IPR006461; IPR006461; IPR006461; IPR006461	PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein
hsd_id_Theobroma_cacao_1754	XP_007036473.2; XP_007036477.2; XP_007036475.2; XP_017972473.1; XP_017972746.1	371; 354; 369; 341; 343	Pfam	PF04749; PF04749; PF04749; PF04749; PF04749	PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family; PLAC8 family	IPR006461; IPR006461; IPR006461; IPR006461; IPR006461	PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein; PLAC8 motif-containing protein
hsd_id_Theobroma_cacao_1755	XP_007036490.2; XP_007036506.2	305; 303	Pfam	PF03152; PF03152	Ubiquitin fusion degradation protein UFD1; Ubiquitin fusion degradation protein UFD1	IPR004854; IPR004854	Ubiquitin fusion degradation protein Ufd1-like; Ubiquitin fusion degradation protein Ufd1-like
hsd_id_Theobroma_cacao_1756	XP_007036502.1; XP_017971926.1	587; 587	Pfam	PF02985, PF13646; PF02985, PF13646	HEAT repeat, HEAT repeats; HEAT repeat, HEAT repeats	IPR000357, -; IPR000357, -	HEAT repeat, -; HEAT repeat, -
hsd_id_Theobroma_cacao_1757	XP_007036504.2; XP_007046271.2; XP_007046270.1	583; 568; 553	Pfam	PF11744; PF11744; PF11744	Aluminium activated malate transporter; Aluminium activated malate transporter; Aluminium activated malate transporter	IPR020966; IPR020966; IPR020966	Aluminum-activated malate transporter; Aluminum-activated malate transporter; Aluminum-activated malate transporter
hsd_id_Theobroma_cacao_1758	XP_007036519.2; XP_007044348.1	431; 440	Pfam	PF06203, PF00643; PF00643, PF06203	CCT motif, B-box zinc finger; B-box zinc finger, CCT motif	IPR010402, IPR000315; IPR000315, IPR010402	CCT domain, B-box-type zinc finger; B-box-type zinc finger, CCT domain
hsd_id_Theobroma_cacao_1759	XP_007036557.2; XP_007044271.2; XP_017973157.1	1235; 1244; 1267	Pfam	PF01814, PF14599, PF13639, PF05495; PF01814, PF14599, PF05495, PF13639; PF01814, PF14599, PF05495, PF13639	Hemerythrin HHE cation binding domain, Zinc-ribbon, Ring finger domain, CHY zinc finger; Hemerythrin HHE cation binding domain, Zinc-ribbon, CHY zinc finger, Ring finger domain; Hemerythrin HHE cation binding domain, Zinc-ribbon, CHY zinc finger, Ring finger domain	IPR012312, IPR039512, IPR001841, IPR008913; IPR012312, IPR039512, IPR008913, IPR001841; IPR012312, IPR039512, IPR008913, IPR001841	Haemerythrin-like, RCHY1, zinc-ribbon, Zinc finger, RING-type, Zinc finger, CHY-type; Haemerythrin-like, RCHY1, zinc-ribbon, Zinc finger, CHY-type, Zinc finger, RING-type; Haemerythrin-like, RCHY1, zinc-ribbon, Zinc finger, CHY-type, Zinc finger, RING-type
hsd_id_Theobroma_cacao_1760	XP_007036590.2; XP_007036591.2	307; 315	Pfam	PF04720; PF04720	PDDEXK-like family of unknown function; PDDEXK-like family of unknown function	IPR006502; IPR006502	Protein of unknown function PDDEXK-like; Protein of unknown function PDDEXK-like
hsd_id_Theobroma_cacao_1761	XP_007036605.2; XP_017972667.1	289; 291	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1762	XP_007036743.1; XP_017985239.1; XP_017974004.1; XP_017985238.1; XP_007041757.2	221; 219; 219; 219; 219	Pfam	PF00197; PF00197; PF00197; PF00197; PF00197	Trypsin and protease inhibitor; Trypsin and protease inhibitor; Trypsin and protease inhibitor; Trypsin and protease inhibitor; Trypsin and protease inhibitor	IPR002160; IPR002160; IPR002160; IPR002160; IPR002160	Proteinase inhibitor I3, Kunitz legume; Proteinase inhibitor I3, Kunitz legume; Proteinase inhibitor I3, Kunitz legume; Proteinase inhibitor I3, Kunitz legume; Proteinase inhibitor I3, Kunitz legume
hsd_id_Theobroma_cacao_1763	XP_007036788.2; XP_017982401.1; XP_017981031.1	246; 254; 262	Pfam	PF12776; PF12776; PF12776	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR024752; IPR024752; IPR024752	Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain
hsd_id_Theobroma_cacao_1764	XP_007036791.1; XP_017974303.1; XP_017975705.1; XP_017970148.1; XP_007040677.1; XP_007047234.1; XP_007040018.2; XP_007037749.1; XP_017970897.1; XP_007052033.2	169; 152; 83; 199; 163; 188; 197; 161; 164; 196	Pfam	PF13499; PF13499; PF13499; PF13499; PF13499; PF13499; PF13499; PF13499; PF13499; PF13499	EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair	IPR002048; IPR002048; IPR002048; IPR002048; IPR002048; IPR002048; IPR002048; IPR002048; IPR002048; IPR002048	EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain
hsd_id_Theobroma_cacao_1765	XP_007036933.2; XP_017975130.1; XP_017971285.1; XP_017975012.1	356; 356; 356; 432	Pfam	PF03951, PF00120; PF03951, PF00120; PF03951, PF00120; PF03951, PF00120	Glutamine synthetase, beta-Grasp domain, Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain, Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain, Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain, Glutamine synthetase, catalytic domain	IPR008147, IPR008146; IPR008147, IPR008146; IPR008147, IPR008146; IPR008147, IPR008146	Glutamine synthetase, beta-Grasp domain, Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain, Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain, Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain, Glutamine synthetase, catalytic domain
hsd_id_Theobroma_cacao_1766	XP_007036951.2; XP_007045491.2; XP_017983681.1	437; 438; 394	Pfam	PF04564; PF04564; PF04564	U-box domain; U-box domain; U-box domain	IPR003613; IPR003613; IPR003613	U box domain; U box domain; U box domain
hsd_id_Theobroma_cacao_1767	XP_007036953.2; XP_017973240.1; XP_007047106.2; XP_017970534.1	866; 859; 917; 939	Pfam	PF00503; PF00503; PF00503; PF00503	G-protein alpha subunit; G-protein alpha subunit; G-protein alpha subunit; G-protein alpha subunit	IPR001019; IPR001019; IPR001019; IPR001019	Guanine nucleotide binding protein (G-protein), alpha subunit; Guanine nucleotide binding protein (G-protein), alpha subunit; Guanine nucleotide binding protein (G-protein), alpha subunit; Guanine nucleotide binding protein (G-protein), alpha subunit
hsd_id_Theobroma_cacao_1768	XP_007036962.2; XP_007040722.2	428; 402	Pfam	PF05542; PF05542	Protein of unknown function (DUF760); Protein of unknown function (DUF760)	IPR008479; IPR008479	Protein of unknown function DUF760; Protein of unknown function DUF760
hsd_id_Theobroma_cacao_1769	XP_007036964.2; XP_007036980.2; XP_017970562.1; XP_007045462.2; XP_017971948.1	332; 325; 337; 334; 327	Pfam	PF00149; PF00149; PF00149; PF00149; PF00149	Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase	IPR004843; IPR004843; IPR004843; IPR004843; IPR004843	Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type
hsd_id_Theobroma_cacao_1770	XP_007037002.2; XP_007045457.2	316; 315	Pfam	PF00191; PF00191	Annexin; Annexin	IPR018502; IPR018502	Annexin repeat; Annexin repeat
hsd_id_Theobroma_cacao_1771	XP_007037006.2; XP_017983936.1	449; 398	Pfam	PF12146; PF12146	Serine aminopeptidase, S33; Serine aminopeptidase, S33	IPR022742; IPR022742	Serine aminopeptidase, S33; Serine aminopeptidase, S33
hsd_id_Theobroma_cacao_1772	XP_007037025.1; XP_017981879.1; XP_017975895.1; XP_017972402.1; XP_007047820.2; XP_017979046.1; XP_007045440.2; XP_007048627.2	178; 257; 95; 89; 259; 292; 183; 253	Pfam	PF04770; PF04770; PF04770; PF04770; PF04770; PF04770; PF04770; PF04770	ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region	IPR006456; IPR006456; IPR006456; IPR006456; IPR006456; IPR006456; IPR006456; IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain
hsd_id_Theobroma_cacao_1773	XP_007037197.2; XP_017973961.1; XP_017974412.1; XP_017985365.1; XP_017970445.1	598; 588; 593; 610; 587	Pfam	PF00854; PF00854; PF00854; PF00854; PF00854	POT family; POT family; POT family; POT family; POT family	IPR000109; IPR000109; IPR000109; IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_1774	XP_007037212.1; XP_007044376.2; XP_007047858.2	334; 319; 330	Pfam	PF02183, PF00046; PF02183, PF00046; PF00046, PF02183	Homeobox associated leucine zipper, Homeodomain; Homeobox associated leucine zipper, Homeodomain; Homeodomain, Homeobox associated leucine zipper	IPR003106, IPR001356; IPR003106, IPR001356; IPR001356, IPR003106	Leucine zipper, homeobox-associated, Homeobox domain; Leucine zipper, homeobox-associated, Homeobox domain; Homeobox domain, Leucine zipper, homeobox-associated
hsd_id_Theobroma_cacao_1775	XP_007037215.2; XP_007046240.2	578; 582	Pfam	PF00854; PF00854	POT family; POT family	IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_1776	XP_007037220.2; XP_017975469.1; XP_007046223.1; XP_007038450.1	284; 286; 285; 291	Pfam	PF01145; PF01145; PF01145; PF01145	SPFH domain / Band 7 family; SPFH domain / Band 7 family; SPFH domain / Band 7 family; SPFH domain / Band 7 family	IPR001107; IPR001107; IPR001107; IPR001107	Band 7 domain; Band 7 domain; Band 7 domain; Band 7 domain
hsd_id_Theobroma_cacao_1777	XP_007037279.1; XP_017972854.1; XP_007046175.1	191; 191; 190	Pfam	PF12850; PF12850; PF12850	Calcineurin-like phosphoesterase superfamily domain; Calcineurin-like phosphoesterase superfamily domain; Calcineurin-like phosphoesterase superfamily domain	IPR024654; IPR024654; IPR024654	Calcineurin-like phosphoesterase domain, lpxH-type; Calcineurin-like phosphoesterase domain, lpxH-type; Calcineurin-like phosphoesterase domain, lpxH-type
hsd_id_Theobroma_cacao_1778	XP_007037296.2; XP_007047390.2	268; 327	Pfam	PF00307, PF03271; PF03271, PF00307	Calponin homology (CH) domain, EB1-like C-terminal motif; EB1-like C-terminal motif, Calponin homology (CH) domain	IPR001715, IPR004953; IPR004953, IPR001715	Calponin homology domain, EB1, C-terminal; EB1, C-terminal, Calponin homology domain
hsd_id_Theobroma_cacao_1779	XP_007037303.1; XP_017970193.1; XP_007038033.2	170; 173; 140	Pfam	PF03134; PF03134; PF03134	TB2/DP1, HVA22 family; TB2/DP1, HVA22 family; TB2/DP1, HVA22 family	IPR004345; IPR004345; IPR004345	TB2/DP1/HVA22-related protein; TB2/DP1/HVA22-related protein; TB2/DP1/HVA22-related protein
hsd_id_Theobroma_cacao_1780	XP_007037318.2; XP_007046111.2; XP_017973620.1; XP_017973907.1; XP_007038610.2; XP_007051920.2; XP_017974924.1	615; 616; 612; 630; 644; 635; 620	Pfam	PF03141; PF03141; PF03141; PF03141; PF03141; PF03141; PF03141	Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159; IPR004159; IPR004159; IPR004159; IPR004159; IPR004159; IPR004159	Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase
hsd_id_Theobroma_cacao_1781	XP_007037326.2; XP_007037331.2; XP_017972724.1; XP_017970722.1; XP_007046107.2	230; 233; 233; 223; 229	Pfam	PF02798; PF02798; PF02798; PF02798; PF02798	Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, N-terminal domain	IPR004045; IPR004045; IPR004045; IPR004045; IPR004045	Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal
hsd_id_Theobroma_cacao_1782	XP_007037328.1; XP_007049919.1; XP_017975108.1	437; 436; 437	Pfam	PF03464, PF03465, PF03463; PF03464, PF03465, PF03463; PF03463, PF03464, PF03465	eRF1 domain 2, eRF1 domain 3, eRF1 domain 1; eRF1 domain 2, eRF1 domain 3, eRF1 domain 1; eRF1 domain 1, eRF1 domain 2, eRF1 domain 3	IPR005141, IPR005142, IPR005140; IPR005141, IPR005142, IPR005140; IPR005140, IPR005141, IPR005142	eRF1 domain 2, eRF1 domain 3, eRF1 domain 1/Pelota-like; eRF1 domain 2, eRF1 domain 3, eRF1 domain 1/Pelota-like; eRF1 domain 1/Pelota-like, eRF1 domain 2, eRF1 domain 3
hsd_id_Theobroma_cacao_1783	XP_007037352.2; XP_017971921.1	286; 285	Pfam	PF12906, PF12428; PF12906, PF12428	RING-variant domain, Protein of unknown function (DUF3675); RING-variant domain, Protein of unknown function (DUF3675)	IPR011016, IPR022143; IPR011016, IPR022143	Zinc finger, RING-CH-type, Protein of unknown function DUF3675; Zinc finger, RING-CH-type, Protein of unknown function DUF3675
hsd_id_Theobroma_cacao_1784	XP_007037398.2; XP_007046040.1	202; 203	Pfam	PF06127; PF06127	Protein of unknown function (DUF962); Protein of unknown function (DUF962)	IPR009305; IPR009305	2-hydroxy-palmitic acid dioxygenase Mpo1-like; 2-hydroxy-palmitic acid dioxygenase Mpo1-like
hsd_id_Theobroma_cacao_1785	XP_007037421.1; XP_007051934.1	208; 199	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_1786	XP_007037450.2; XP_007045962.1	173; 178	Pfam	PF04398; PF04398	Protein of unknown function, DUF538; Protein of unknown function, DUF538	IPR007493; IPR007493	Protein of unknown function DUF538; Protein of unknown function DUF538
hsd_id_Theobroma_cacao_1787	XP_007037470.2; XP_017982070.1	422; 396	Pfam	PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_1788	XP_007037487.2; XP_017970547.1	538; 519	Pfam	PF03662; PF03662	Glycosyl hydrolase family 79, N-terminal domain; Glycosyl hydrolase family 79, N-terminal domain	IPR005199; IPR005199	Glycoside hydrolase, family 79; Glycoside hydrolase, family 79
hsd_id_Theobroma_cacao_1789	XP_007037490.1; XP_007045925.2	326; 324	Pfam	PF13855, PF00560; PF13855, PF00560	Leucine rich repeat, Leucine Rich Repeat; Leucine rich repeat, Leucine Rich Repeat	IPR001611, IPR001611; IPR001611, IPR001611	Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat
hsd_id_Theobroma_cacao_1790	XP_007037493.2; XP_007045922.2	305; 295	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1791	XP_007037575.1; XP_017975600.1	644; 653	Pfam	PF03081; PF03081	Exo70 exocyst complex subunit; Exo70 exocyst complex subunit	IPR004140; IPR004140	Exocyst complex component Exo70; Exocyst complex component Exo70
hsd_id_Theobroma_cacao_1792	XP_007037580.2; XP_017971413.1	403; 428	Pfam	PF03009; PF03009	Glycerophosphoryl diester phosphodiesterase family; Glycerophosphoryl diester phosphodiesterase family	IPR030395; IPR030395	Glycerophosphodiester phosphodiesterase domain; Glycerophosphodiester phosphodiesterase domain
hsd_id_Theobroma_cacao_1793	XP_007037603.1; XP_017974123.1; XP_007045838.1; XP_007038807.2; XP_007040334.1	120; 108; 117; 98; 103	Pfam	; ; ; ; 	; ; ; ; 	; ; ; ; 	; ; ; ; 
hsd_id_Theobroma_cacao_1794	XP_007037639.2; XP_017970267.1	228; 231	Pfam	PF00582; PF00582	Universal stress protein family; Universal stress protein family	IPR006016; IPR006016	UspA; UspA
hsd_id_Theobroma_cacao_1795	XP_007037641.1; XP_007043494.1	535; 533	Pfam	PF01501; PF01501	Glycosyl transferase family 8; Glycosyl transferase family 8	IPR002495; IPR002495	Glycosyl transferase, family 8; Glycosyl transferase, family 8
hsd_id_Theobroma_cacao_1796	XP_007037726.2; XP_007045675.2	660; 658	Pfam	PF00485, PF01928; PF00485, PF01928	Phosphoribulokinase / Uridine kinase family, CYTH domain; Phosphoribulokinase / Uridine kinase family, CYTH domain	IPR006083, IPR023577; IPR006083, IPR023577	Phosphoribulokinase/uridine kinase, CYTH domain; Phosphoribulokinase/uridine kinase, CYTH domain
hsd_id_Theobroma_cacao_1797	XP_007037729.2; XP_007037730.2	334; 331	Pfam	PF03088; PF03088	Strictosidine synthase; Strictosidine synthase	IPR018119; IPR018119	Strictosidine synthase, conserved region; Strictosidine synthase, conserved region
hsd_id_Theobroma_cacao_1798	XP_007037774.2; XP_007037775.2	508; 516	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_1799	XP_007037777.1; XP_017977203.1; XP_017983173.1	441; 434; 394	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1800	XP_007037806.2; XP_007044879.2	374; 443	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_1801	XP_007037811.2; XP_007038245.1	194; 254	Pfam	PF01625; PF01625	Peptide methionine sulfoxide reductase; Peptide methionine sulfoxide reductase	IPR002569; IPR002569	Peptide methionine sulphoxide reductase MsrA; Peptide methionine sulphoxide reductase MsrA
hsd_id_Theobroma_cacao_1802	XP_007037845.1; XP_017981141.1	715; 717	Pfam	PF02847; PF02847	MA3 domain; MA3 domain	IPR003891; IPR003891	Initiation factor eIF-4 gamma, MA3; Initiation factor eIF-4 gamma, MA3
hsd_id_Theobroma_cacao_1803	XP_007037848.2; XP_007044928.2	255; 260	Pfam	PF08241; PF08241	Methyltransferase domain; Methyltransferase domain	IPR013216; IPR013216	Methyltransferase type 11; Methyltransferase type 11
hsd_id_Theobroma_cacao_1804	XP_007037881.2; XP_017975931.1	210; 175	Pfam	PF01165; PF01165	Ribosomal protein S21; Ribosomal protein S21	IPR001911; IPR001911	Ribosomal protein S21; Ribosomal protein S21
hsd_id_Theobroma_cacao_1805	XP_007037895.2; XP_007052336.1; XP_007038244.1	237; 148; 148	Pfam	PF00334; PF00334; PF00334	Nucleoside diphosphate kinase; Nucleoside diphosphate kinase; Nucleoside diphosphate kinase	IPR034907; IPR034907; IPR034907	Nucleoside diphosphate kinase-like domain; Nucleoside diphosphate kinase-like domain; Nucleoside diphosphate kinase-like domain
hsd_id_Theobroma_cacao_1806	XP_007037896.2; XP_017970471.1	519; 499	Pfam	PF03514; PF03514	GRAS domain family; GRAS domain family	IPR005202; IPR005202	Transcription factor GRAS; Transcription factor GRAS
hsd_id_Theobroma_cacao_1807	XP_007037898.2; XP_017972578.1; XP_017972579.1; XP_017976547.1; XP_017976546.1; XP_017976745.1	433; 427; 434; 442; 444; 444	Pfam	PF02458; PF02458; PF02458; PF02458; PF02458; PF02458	Transferase family; Transferase family; Transferase family; Transferase family; Transferase family; Transferase family	IPR003480; IPR003480; IPR003480; IPR003480; IPR003480; IPR003480	Transferase; Transferase; Transferase; Transferase; Transferase; Transferase
hsd_id_Theobroma_cacao_1808	XP_007037920.2; XP_007045013.1	442; 451	Pfam	PF12056; PF12056	Protein of unknown function (DUF3537); Protein of unknown function (DUF3537)	IPR021924; IPR021924	Protein of unknown function DUF3537; Protein of unknown function DUF3537
hsd_id_Theobroma_cacao_1809	XP_007037924.2; XP_017974364.1; XP_017981162.1	108; 114; 96	Pfam	PF03650; PF03650; PF03650	Mitochondrial pyruvate carriers; Mitochondrial pyruvate carriers; Mitochondrial pyruvate carriers	IPR005336; IPR005336; IPR005336	Mitochondrial pyruvate carrier; Mitochondrial pyruvate carrier; Mitochondrial pyruvate carrier
hsd_id_Theobroma_cacao_1810	XP_007037932.1; XP_017970040.1	244; 245	Pfam	PF00406, PF05191; PF00406, PF05191	Adenylate kinase, Adenylate kinase, active site lid; Adenylate kinase, Adenylate kinase, active site lid	-, IPR007862; -, IPR007862	-, Adenylate kinase, active site lid domain; -, Adenylate kinase, active site lid domain
hsd_id_Theobroma_cacao_1811	XP_007037960.1; XP_007044055.1	182; 183	Pfam	PF00237; PF00237	Ribosomal protein L22p/L17e; Ribosomal protein L22p/L17e	IPR001063; IPR001063	Ribosomal protein L22/L17; Ribosomal protein L22/L17
hsd_id_Theobroma_cacao_1812	XP_007037978.2; XP_007037979.2; XP_007045863.2; XP_007045860.2	613; 621; 617; 619	Pfam	PF16656, PF00149, PF17808, PF14008; PF00149, PF17808, PF14008, PF16656; PF14008, PF00149, PF16656, PF17808; PF14008, PF00149, PF16656, PF17808	Purple acid Phosphatase, N-terminal domain, Calcineurin-like phosphoesterase, Fn3-like domain from Purple Acid Phosphatase, Iron/zinc purple acid phosphatase-like protein C; Calcineurin-like phosphoesterase, Fn3-like domain from Purple Acid Phosphatase, Iron/zinc purple acid phosphatase-like protein C, Purple acid Phosphatase, N-terminal domain; Iron/zinc purple acid phosphatase-like protein C, Calcineurin-like phosphoesterase, Purple acid Phosphatase, N-terminal domain, Fn3-like domain from Purple Acid Phosphatase; Iron/zinc purple acid phosphatase-like protein C, Calcineurin-like phosphoesterase, Purple acid Phosphatase, N-terminal domain, Fn3-like domain from Purple Acid Phosphatase	IPR015914, IPR004843, IPR040974, IPR025733; IPR004843, IPR040974, IPR025733, IPR015914; IPR025733, IPR004843, IPR015914, IPR040974; IPR025733, IPR004843, IPR015914, IPR040974	Purple acid phosphatase, N-terminal, Calcineurin-like phosphoesterase domain, ApaH type, Purple acid phosphatase, Fn3-like domain, Iron/zinc purple acid phosphatase-like C-terminal domain; Calcineurin-like phosphoesterase domain, ApaH type, Purple acid phosphatase, Fn3-like domain, Iron/zinc purple acid phosphatase-like C-terminal domain, Purple acid phosphatase, N-terminal; Iron/zinc purple acid phosphatase-like C-terminal domain, Calcineurin-like phosphoesterase domain, ApaH type, Purple acid phosphatase, N-terminal, Purple acid phosphatase, Fn3-like domain; Iron/zinc purple acid phosphatase-like C-terminal domain, Calcineurin-like phosphoesterase domain, ApaH type, Purple acid phosphatase, N-terminal, Purple acid phosphatase, Fn3-like domain
hsd_id_Theobroma_cacao_1813	XP_007037982.2; XP_017971981.1	356; 386	Pfam	PF01753; PF01753	MYND finger; MYND finger	IPR002893; IPR002893	Zinc finger, MYND-type; Zinc finger, MYND-type
hsd_id_Theobroma_cacao_1814	XP_007037993.2; XP_007049323.2	774; 704	Pfam	PF00226, PF11926; PF00226, PF11926	DnaJ domain, Domain of unknown function (DUF3444); DnaJ domain, Domain of unknown function (DUF3444)	IPR001623, IPR024593; IPR001623, IPR024593	DnaJ domain, Domain of unknown function DUF3444; DnaJ domain, Domain of unknown function DUF3444
hsd_id_Theobroma_cacao_1815	XP_007038001.2; XP_017985469.1	544; 532	Pfam	PF00564, PF00571; PF00564, PF00571	PB1 domain, CBS domain; PB1 domain, CBS domain	IPR000270, IPR000644; IPR000270, IPR000644	PB1 domain, CBS domain; PB1 domain, CBS domain
hsd_id_Theobroma_cacao_1816	XP_007038038.2; XP_017972155.1; XP_017972669.1; XP_017972399.1	351; 352; 310; 308	Pfam	PF00106; PF00106; PF00106; PF00106	short chain dehydrogenase; short chain dehydrogenase; short chain dehydrogenase; short chain dehydrogenase	IPR002347; IPR002347; IPR002347; IPR002347	Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR
hsd_id_Theobroma_cacao_1817	XP_007038067.2; XP_017978498.1	175; 177	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1818	XP_007038105.2; XP_017975128.1; XP_007043080.2; XP_017982662.1	371; 375; 306; 332	Pfam	PF00153; PF00153; PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein; Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108; IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_1819	XP_007038108.2; XP_007043822.2	556; 567	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1820	XP_007038142.2; XP_017970939.1	963; 978	Pfam	PF04059, PF00076; PF04059, PF00076	RNA recognition motif 2, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif 2, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR007201, IPR000504; IPR007201, IPR000504	Mei2-like, C-terminal RNA recognition motif, RNA recognition motif domain; Mei2-like, C-terminal RNA recognition motif, RNA recognition motif domain
hsd_id_Theobroma_cacao_1821	XP_007038153.1; XP_017976305.1	586; 576	Pfam	PF07002, PF00168; PF00168, PF07002	Copine, C2 domain; C2 domain, Copine	IPR010734, IPR000008; IPR000008, IPR010734	Copine, C-terminal, C2 domain; C2 domain, Copine, C-terminal
hsd_id_Theobroma_cacao_1822	XP_007038156.1; XP_017974173.1	116; 116	Pfam	PF03656; PF03656	Pam16; Pam16	-; -	-; -
hsd_id_Theobroma_cacao_1823	XP_007038164.2; XP_007043773.2	255; 269	Pfam	PF00650; PF00650	CRAL/TRIO domain; CRAL/TRIO domain	IPR001251; IPR001251	CRAL-TRIO lipid binding domain; CRAL-TRIO lipid binding domain
hsd_id_Theobroma_cacao_1824	XP_007038206.2; XP_017971298.1	312; 256	Pfam	PF02777, PF00081; PF00081, PF02777	Iron/manganese superoxide dismutases, C-terminal domain, Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, alpha-hairpin domain, Iron/manganese superoxide dismutases, C-terminal domain	IPR019832, IPR019831; IPR019831, IPR019832	Manganese/iron superoxide dismutase, C-terminal, Manganese/iron superoxide dismutase, N-terminal; Manganese/iron superoxide dismutase, N-terminal, Manganese/iron superoxide dismutase, C-terminal
hsd_id_Theobroma_cacao_1825	XP_007038217.2; XP_007038218.2; XP_007038219.2; XP_007039659.1	111; 110; 110; 111	Pfam	PF14368; PF14368; PF14368; PF14368	Probable lipid transfer; Probable lipid transfer; Probable lipid transfer; Probable lipid transfer	IPR016140; IPR016140; IPR016140; IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
hsd_id_Theobroma_cacao_1826	XP_007038220.2; XP_007047888.2; XP_007042909.1	230; 221; 194	Pfam	PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_1827	XP_007038224.2; XP_017976889.1	411; 411	Pfam	PF00208, PF02812; PF00208, PF02812	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase, Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase, Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	IPR006096, IPR006097; IPR006096, IPR006097	Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal, Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal, Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain
hsd_id_Theobroma_cacao_1828	XP_007038229.2; XP_017972587.1	448; 497	Pfam	PF13962, PF12796; PF12796, PF13962	Domain of unknown function, Ankyrin repeats (3 copies); Ankyrin repeats (3 copies), Domain of unknown function	IPR026961, IPR020683; IPR020683, IPR026961	PGG domain, Ankyrin repeat-containing domain; Ankyrin repeat-containing domain, PGG domain
hsd_id_Theobroma_cacao_1829	XP_007038242.2; XP_007052360.1; XP_017982788.1; XP_017977353.1	207; 203; 223; 229	Pfam	PF08613; PF08613; PF08613; PF08613	Cyclin; Cyclin; Cyclin; Cyclin	IPR013922; IPR013922; IPR013922; IPR013922	Cyclin PHO80-like; Cyclin PHO80-like; Cyclin PHO80-like; Cyclin PHO80-like
hsd_id_Theobroma_cacao_1830	XP_007038254.2; XP_017985236.1	341; 336	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1831	XP_007038268.1; XP_017980109.1	247; 165	Pfam	PF00642; PF00642	Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar)	IPR000571; IPR000571	Zinc finger, CCCH-type; Zinc finger, CCCH-type
hsd_id_Theobroma_cacao_1832	XP_007038322.2; XP_007052177.2; XP_017973943.1; XP_007043563.1	273; 272; 270; 266	Pfam	PF03330, PF01357; PF03330, PF01357; PF01357, PF03330; PF03330, PF01357	Lytic transglycolase, Expansin C-terminal domain; Lytic transglycolase, Expansin C-terminal domain; Expansin C-terminal domain, Lytic transglycolase; Lytic transglycolase, Expansin C-terminal domain	IPR009009, IPR007117; IPR009009, IPR007117; IPR007117, IPR009009; IPR009009, IPR007117	RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain; Expansin, cellulose-binding-like domain, RlpA-like protein, double-psi beta-barrel domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain
hsd_id_Theobroma_cacao_1833	XP_007038324.2; XP_017971302.1	191; 234	Pfam	PF02893; PF02893	GRAM domain; GRAM domain	IPR004182; IPR004182	GRAM domain; GRAM domain
hsd_id_Theobroma_cacao_1834	XP_007038326.2; XP_017972244.1	480; 470	Pfam	PF00155; PF00155	Aminotransferase class I and II; Aminotransferase class I and II	IPR004839; IPR004839	Aminotransferase, class I/classII; Aminotransferase, class I/classII
hsd_id_Theobroma_cacao_1835	XP_007038337.2; XP_007047990.1	178; 174	Pfam	PF01477; PF01477	PLAT/LH2 domain; PLAT/LH2 domain	IPR001024; IPR001024	PLAT/LH2 domain; PLAT/LH2 domain
hsd_id_Theobroma_cacao_1836	XP_007038376.2; XP_017985340.1	233; 244	Pfam	PF04749; PF04749	PLAC8 family; PLAC8 family	IPR006461; IPR006461	PLAC8 motif-containing protein; PLAC8 motif-containing protein
hsd_id_Theobroma_cacao_1837	XP_007038389.2; XP_017969377.1	56; 65	Pfam	PF15054; PF15054	Domain of unknown function (DUF4535); Domain of unknown function (DUF4535)	IPR027854; IPR027854	Short transmembrane mitochondrial protein 1; Short transmembrane mitochondrial protein 1
hsd_id_Theobroma_cacao_1838	XP_007038418.2; XP_007039951.2; XP_007039937.2; XP_007039938.2; XP_007039940.2	201; 204; 202; 200; 201	Pfam	PF04043; PF04043; PF04043; PF04043; PF04043	Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor	IPR006501; IPR006501; IPR006501; IPR006501; IPR006501	Pectinesterase inhibitor domain; Pectinesterase inhibitor domain; Pectinesterase inhibitor domain; Pectinesterase inhibitor domain; Pectinesterase inhibitor domain
hsd_id_Theobroma_cacao_1839	XP_007038422.2; XP_017973059.1	210; 209	Pfam	PF04043; PF04043	Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor	IPR006501; IPR006501	Pectinesterase inhibitor domain; Pectinesterase inhibitor domain
hsd_id_Theobroma_cacao_1840	XP_007052073.1; XP_007038446.1; XP_017973934.1	151; 151; 151	Pfam	PF08069, PF00312; PF08069, PF00312; PF08069, PF00312	Ribosomal S13/S15 N-terminal domain, Ribosomal protein S15; Ribosomal S13/S15 N-terminal domain, Ribosomal protein S15; Ribosomal S13/S15 N-terminal domain, Ribosomal protein S15	IPR012606, IPR000589; IPR012606, IPR000589; IPR012606, IPR000589	Ribosomal protein S13/S15, N-terminal, Ribosomal protein S15; Ribosomal protein S13/S15, N-terminal, Ribosomal protein S15; Ribosomal protein S13/S15, N-terminal, Ribosomal protein S15
hsd_id_Theobroma_cacao_1841	XP_007038449.2; XP_007052069.2	261; 219	Pfam	PF07279; PF07279	Protein of unknown function (DUF1442); Protein of unknown function (DUF1442)	IPR009902; IPR009902	Protein of unknown function DUF1442; Protein of unknown function DUF1442
hsd_id_Theobroma_cacao_1842	XP_007038471.2; XP_007040016.2	230; 233	Pfam	PF02861; PF02861	Clp amino terminal domain, pathogenicity island component; Clp amino terminal domain, pathogenicity island component	IPR004176; IPR004176	Clp,  repeat (R) domain; Clp,  repeat (R) domain
hsd_id_Theobroma_cacao_1843	XP_007038506.2; XP_017983170.1; XP_017981957.1	489; 537; 514	Pfam	PF01120; PF01120; PF01120	Alpha-L-fucosidase; Alpha-L-fucosidase; Alpha-L-fucosidase	IPR000933; IPR000933; IPR000933	Glycoside hydrolase, family 29; Glycoside hydrolase, family 29; Glycoside hydrolase, family 29
hsd_id_Theobroma_cacao_1844	XP_007038548.2; XP_007040101.2	464; 465	Pfam	PF01154, PF08540; PF08540, PF01154	Hydroxymethylglutaryl-coenzyme A synthase N terminal, Hydroxymethylglutaryl-coenzyme A synthase C terminal; Hydroxymethylglutaryl-coenzyme A synthase C terminal, Hydroxymethylglutaryl-coenzyme A synthase N terminal	IPR013528, IPR013746; IPR013746, IPR013528	Hydroxymethylglutaryl-coenzyme A synthase, N-terminal, Hydroxymethylglutaryl-coenzyme A synthase, C-terminal domain; Hydroxymethylglutaryl-coenzyme A synthase, C-terminal domain, Hydroxymethylglutaryl-coenzyme A synthase, N-terminal
hsd_id_Theobroma_cacao_1845	XP_007038565.2; XP_007038569.2	363; 364	Pfam	PF08240, PF00107; PF00107, PF08240	Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Zinc-binding dehydrogenase, Alcohol dehydrogenase GroES-like domain	IPR013154, IPR013149; IPR013149, IPR013154	Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, C-terminal, Alcohol dehydrogenase, N-terminal
hsd_id_Theobroma_cacao_1846	XP_007038582.2; XP_017980430.1	345; 381	Pfam	PF04080; PF04080	Per1-like family; Per1-like family	IPR007217; IPR007217	Per1-like; Per1-like
hsd_id_Theobroma_cacao_1847	XP_007038603.2; XP_007051925.2	372; 360	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1848	XP_007038615.2; XP_017972363.1; XP_017971683.1; XP_017973877.1	480; 481; 496; 446	Pfam	PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_1849	XP_007038692.2; XP_007040187.2; XP_007051850.2; XP_007051849.2; XP_017973857.1	522; 516; 544; 516; 518	Pfam	PF05686; PF05686; PF05686; PF05686; PF05686	Glycosyl transferase family 90; Glycosyl transferase family 90; Glycosyl transferase family 90; Glycosyl transferase family 90; Glycosyl transferase family 90	IPR006598; IPR006598; IPR006598; IPR006598; IPR006598	Glycosyl transferase CAP10 domain; Glycosyl transferase CAP10 domain; Glycosyl transferase CAP10 domain; Glycosyl transferase CAP10 domain; Glycosyl transferase CAP10 domain
hsd_id_Theobroma_cacao_1850	XP_007038724.1; XP_017969829.1	111; 146	Pfam	PF01158; PF01158	Ribosomal protein L36e; Ribosomal protein L36e	IPR000509; IPR000509	Ribosomal protein L36e; Ribosomal protein L36e
hsd_id_Theobroma_cacao_1851	XP_007038747.2; XP_017972651.1	897; 901	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_1852	XP_007038752.2; XP_007038755.2; XP_017973088.1; XP_017972941.1; XP_017972948.1	508; 548; 548; 546; 546	Pfam	PF03600; PF03600; PF03600; PF03600; PF03600	Citrate transporter; Citrate transporter; Citrate transporter; Citrate transporter; Citrate transporter	IPR004680; IPR004680; IPR004680; IPR004680; IPR004680	Citrate transporter-like domain; Citrate transporter-like domain; Citrate transporter-like domain; Citrate transporter-like domain; Citrate transporter-like domain
hsd_id_Theobroma_cacao_1853	XP_007038805.2; XP_007040333.2	340; 316	Pfam	PF04116; PF04116	Fatty acid hydroxylase superfamily; Fatty acid hydroxylase superfamily	IPR006694; IPR006694	Fatty acid hydroxylase; Fatty acid hydroxylase
hsd_id_Theobroma_cacao_1854	XP_007038831.2; XP_017973573.1	136; 128	Pfam	PF00403; PF00403	Heavy-metal-associated domain; Heavy-metal-associated domain	IPR006121; IPR006121	Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA
hsd_id_Theobroma_cacao_1855	XP_007038874.1; XP_007051689.2; XP_017973245.1; XP_017983890.1	247; 255; 252; 248	Pfam	PF02453; PF02453; PF02453; PF02453	Reticulon; Reticulon; Reticulon; Reticulon	IPR003388; IPR003388; IPR003388; IPR003388	Reticulon; Reticulon; Reticulon; Reticulon
hsd_id_Theobroma_cacao_1856	XP_007038877.2; XP_007040040.2	601; 578	Pfam	PF03595; PF03595	Voltage-dependent anion channel; Voltage-dependent anion channel	IPR004695; IPR004695	Transporter protein SLAC1/Mae1/ Ssu1/TehA; Transporter protein SLAC1/Mae1/ Ssu1/TehA
hsd_id_Theobroma_cacao_1857	XP_007038892.2; XP_017973441.1	577; 571	Pfam	PF02887, PF00224; PF00224, PF02887	Pyruvate kinase, alpha/beta domain, Pyruvate kinase, barrel domain; Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain	IPR015795, IPR015793; IPR015793, IPR015795	Pyruvate kinase, C-terminal, Pyruvate kinase, barrel; Pyruvate kinase, barrel, Pyruvate kinase, C-terminal
hsd_id_Theobroma_cacao_1858	XP_007038907.2; XP_017973029.1; XP_017976235.1; XP_017980111.1; XP_017973031.1; XP_017976449.1; XP_007051664.1; XP_007051193.2; XP_017984204.1; XP_017985111.1; XP_017976136.1	300; 298; 298; 298; 297; 299; 296; 309; 305; 324; 198	Pfam	PF00704; PF00704; PF00704; PF00704; PF00704; PF00704; PF00704; PF00704; PF00704; PF00704; PF00704	Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18; Glycosyl hydrolases family 18	IPR001223; IPR001223; IPR001223; IPR001223; IPR001223; IPR001223; IPR001223; IPR001223; IPR001223; IPR001223; IPR001223	Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain
hsd_id_Theobroma_cacao_1859	XP_007038912.2; XP_007038913.2	352; 378	Pfam	PF00544; PF00544	Pectate lyase; Pectate lyase	IPR002022; IPR002022	Pectate lyase; Pectate lyase
hsd_id_Theobroma_cacao_1860	XP_007038917.2; XP_017972863.1; XP_017972820.1; XP_017972822.1	1483; 1483; 1493; 1490	Pfam	PF00005, PF00664; PF00005, PF00664; PF00005, PF00664; PF00005, PF00664	ABC transporter, ABC transporter transmembrane region; ABC transporter, ABC transporter transmembrane region; ABC transporter, ABC transporter transmembrane region; ABC transporter, ABC transporter transmembrane region	IPR003439, IPR011527; IPR003439, IPR011527; IPR003439, IPR011527; IPR003439, IPR011527	ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain
hsd_id_Theobroma_cacao_1861	XP_007038946.2; XP_007051630.2	416; 399	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_1862	XP_007038955.1; XP_007039472.2; XP_017976003.1; XP_007018123.2; XP_007047844.2; XP_007051418.2; XP_017975523.1	331; 303; 335; 332; 327; 389; 453	Pfam	PF00010; PF00010; PF00010; PF00010; PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_1863	XP_007038974.2; XP_007043977.2	743; 804	Pfam	PF11926, PF00226; PF11926, PF00226	Domain of unknown function (DUF3444), DnaJ domain; Domain of unknown function (DUF3444), DnaJ domain	IPR024593, IPR001623; IPR024593, IPR001623	Domain of unknown function DUF3444, DnaJ domain; Domain of unknown function DUF3444, DnaJ domain
hsd_id_Theobroma_cacao_1864	XP_007039006.1; XP_007040530.2	88; 79	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1865	XP_007039012.2; XP_007048628.2	162; 177	Pfam	PF04178; PF04178	Got1/Sft2-like family; Got1/Sft2-like family	IPR007305; IPR007305	Vesicle transport protein, Got1/SFT2-like; Vesicle transport protein, Got1/SFT2-like
hsd_id_Theobroma_cacao_1866	XP_007039025.2; XP_017975385.1	1090; 1029	Pfam	PF13832, PF00855, PF13831, PF00856, PF00628; PF13831, PF13832, PF00855, PF00856, PF00628	PHD-zinc-finger like domain, PWWP domain, PHD-finger, SET domain, PHD-finger; PHD-finger, PHD-zinc-finger like domain, PWWP domain, SET domain, PHD-finger	-, IPR000313, -, IPR001214, IPR019787; -, -, IPR000313, IPR001214, IPR019787	-, PWWP domain, -, SET domain, Zinc finger, PHD-finger; -, -, PWWP domain, SET domain, Zinc finger, PHD-finger
hsd_id_Theobroma_cacao_1867	XP_007039041.2; XP_017973766.1; XP_017975406.1	584; 578; 595	Pfam	PF00240, PF00454; PF00454, PF00240; PF00454, PF00240	Ubiquitin family, Phosphatidylinositol 3- and 4-kinase; Phosphatidylinositol 3- and 4-kinase, Ubiquitin family; Phosphatidylinositol 3- and 4-kinase, Ubiquitin family	IPR000626, IPR000403; IPR000403, IPR000626; IPR000403, IPR000626	Ubiquitin-like domain, Phosphatidylinositol 3-/4-kinase, catalytic domain; Phosphatidylinositol 3-/4-kinase, catalytic domain, Ubiquitin-like domain; Phosphatidylinositol 3-/4-kinase, catalytic domain, Ubiquitin-like domain
hsd_id_Theobroma_cacao_1868	XP_007039079.2; XP_017972558.1	255; 298	Pfam	PF02042; PF02042	RWP-RK domain; RWP-RK domain	IPR003035; IPR003035	RWP-RK domain; RWP-RK domain
hsd_id_Theobroma_cacao_1869	XP_007039112.1; XP_007051501.2; XP_007039448.2	727; 753; 750	Pfam	PF00400; PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680; IPR001680	WD40 repeat; WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_1870	XP_007039114.2; XP_007048318.2	356; 373	Pfam	PF00856, PF00628; PF00856, PF00628	SET domain, PHD-finger; SET domain, PHD-finger	IPR001214, IPR019787; IPR001214, IPR019787	SET domain, Zinc finger, PHD-finger; SET domain, Zinc finger, PHD-finger
hsd_id_Theobroma_cacao_1871	XP_007039147.2; XP_007039420.2	460; 462	Pfam	PF05631; PF05631	Sugar-tranasporters, 12 TM; Sugar-tranasporters, 12 TM	IPR008509; IPR008509	Molybdate-anion transporter; Molybdate-anion transporter
hsd_id_Theobroma_cacao_1872	XP_007039150.2; XP_017973369.1	378; 371	Pfam	PF03690; PF03690	Uncharacterised protein family (UPF0160); Uncharacterised protein family (UPF0160)	IPR003226; IPR003226	Metal-dependent protein hydrolase; Metal-dependent protein hydrolase
hsd_id_Theobroma_cacao_1873	XP_007039152.1; XP_017983963.1	300; 300	Pfam	PF03643; PF03643	Vacuolar protein sorting-associated protein 26; Vacuolar protein sorting-associated protein 26	IPR028934; IPR028934	Vacuolar protein sorting protein 26 related; Vacuolar protein sorting protein 26 related
hsd_id_Theobroma_cacao_1874	XP_007039156.2; XP_007051474.2	479; 479	Pfam	PF00004, PF14363; PF14363, PF00004	ATPase family associated with various cellular activities (AAA), Domain associated at C-terminal with AAA; Domain associated at C-terminal with AAA, ATPase family associated with various cellular activities (AAA)	IPR003959, IPR025753; IPR025753, IPR003959	ATPase, AAA-type, core, AAA-type ATPase, N-terminal domain; AAA-type ATPase, N-terminal domain, ATPase, AAA-type, core
hsd_id_Theobroma_cacao_1875	XP_007039157.2; XP_007039413.2	392; 356	Pfam	PF17862, PF00004; PF17862, PF00004	AAA+ lid domain, ATPase family associated with various cellular activities (AAA); AAA+ lid domain, ATPase family associated with various cellular activities (AAA)	IPR041569, IPR003959; IPR041569, IPR003959	AAA ATPase, AAA+ lid domain, ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain, ATPase, AAA-type, core
hsd_id_Theobroma_cacao_1876	XP_007039168.2; XP_007045824.1	322; 266	Pfam	PF01182; PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	IPR006148; IPR006148	Glucosamine/galactosamine-6-phosphate isomerase; Glucosamine/galactosamine-6-phosphate isomerase
hsd_id_Theobroma_cacao_1877	XP_007039184.2; XP_017969750.1; XP_017972412.1	536; 541; 533	Pfam	PF13178, PF00612; PF13178, PF00612; PF13178, PF00612	Protein of unknown function (DUF4005), IQ calmodulin-binding motif; Protein of unknown function (DUF4005), IQ calmodulin-binding motif; Protein of unknown function (DUF4005), IQ calmodulin-binding motif	IPR025064, IPR000048; IPR025064, IPR000048; IPR025064, IPR000048	Domain of unknown function DUF4005, IQ motif, EF-hand binding site; Domain of unknown function DUF4005, IQ motif, EF-hand binding site; Domain of unknown function DUF4005, IQ motif, EF-hand binding site
hsd_id_Theobroma_cacao_1878	XP_007039196.2; XP_017972391.1; XP_007051434.2	113; 108; 185	Pfam	PF00428; PF00428; PF00428	60s Acidic ribosomal protein; 60s Acidic ribosomal protein; 60s Acidic ribosomal protein	-; -; -	-; -; -
hsd_id_Theobroma_cacao_1879	XP_007039199.2; XP_007039336.2	437; 433	Pfam	PF01852; PF01852	START domain; START domain	IPR002913; IPR002913	START domain; START domain
hsd_id_Theobroma_cacao_1880	XP_007039235.1; XP_017969667.1	445; 464	Pfam	PF03372; PF03372	Endonuclease/Exonuclease/phosphatase family; Endonuclease/Exonuclease/phosphatase family	IPR005135; IPR005135	Endonuclease/exonuclease/phosphatase; Endonuclease/exonuclease/phosphatase
hsd_id_Theobroma_cacao_1881	XP_007039285.2; XP_007039289.2	369; 369	Pfam	PF00892; PF00892	EamA-like transporter family; EamA-like transporter family	IPR000620; IPR000620	EamA domain; EamA domain
hsd_id_Theobroma_cacao_1882	XP_007039319.1; XP_007051408.2; XP_017973209.1	346; 343; 337	Pfam	PF03171, PF14226; PF03171, PF14226; PF03171, PF14226	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR044861, IPR026992; IPR044861, IPR026992; IPR044861, IPR026992	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_1883	XP_007039322.1; XP_007051419.2	416; 405	Pfam	PF01545; PF01545	Cation efflux family; Cation efflux family	IPR002524; IPR002524	Cation efflux protein; Cation efflux protein
hsd_id_Theobroma_cacao_1884	XP_007039368.1; XP_007027759.2; XP_007028546.2; XP_007040570.2	357; 389; 395; 396	Pfam	PF00462; PF00462; PF00462; PF00462	Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin	IPR002109; IPR002109; IPR002109; IPR002109	Glutaredoxin; Glutaredoxin; Glutaredoxin; Glutaredoxin
hsd_id_Theobroma_cacao_1885	XP_007039376.2; XP_007050983.1; XP_007045220.2; XP_007042031.2; XP_017980803.1; XP_017973090.1; XP_017972968.1; XP_007040357.2	496; 510; 495; 498; 515; 483; 507; 514	Pfam	PF00759; PF00759; PF00759; PF00759; PF00759; PF00759; PF00759; PF00759	Glycosyl hydrolase family 9; Glycosyl hydrolase family 9; Glycosyl hydrolase family 9; Glycosyl hydrolase family 9; Glycosyl hydrolase family 9; Glycosyl hydrolase family 9; Glycosyl hydrolase family 9; Glycosyl hydrolase family 9	IPR001701; IPR001701; IPR001701; IPR001701; IPR001701; IPR001701; IPR001701; IPR001701	Glycoside hydrolase family 9; Glycoside hydrolase family 9; Glycoside hydrolase family 9; Glycoside hydrolase family 9; Glycoside hydrolase family 9; Glycoside hydrolase family 9; Glycoside hydrolase family 9; Glycoside hydrolase family 9
hsd_id_Theobroma_cacao_1886	XP_007039398.2; XP_017973145.1	605; 601	Pfam	PF00566; PF00566	Rab-GTPase-TBC domain; Rab-GTPase-TBC domain	IPR000195; IPR000195	Rab-GTPase-TBC domain; Rab-GTPase-TBC domain
hsd_id_Theobroma_cacao_1887	XP_007039418.2; XP_017973370.1	346; 297	Pfam	PF03328; PF03328	HpcH/HpaI aldolase/citrate lyase family; HpcH/HpaI aldolase/citrate lyase family	IPR005000; IPR005000	HpcH/HpaI aldolase/citrate lyase domain; HpcH/HpaI aldolase/citrate lyase domain
hsd_id_Theobroma_cacao_1888	XP_007039444.1; XP_017969753.1	154; 157	Pfam	PF04061; PF04061	ORMDL family; ORMDL family	IPR007203; IPR007203	ORMDL family; ORMDL family
hsd_id_Theobroma_cacao_1889	XP_007039553.1; XP_007041092.2	165; 155	Pfam	PF01597; PF01597	Glycine cleavage H-protein; Glycine cleavage H-protein	IPR033753; IPR033753	Glycine cleavage system H-protein/Simiate; Glycine cleavage system H-protein/Simiate
hsd_id_Theobroma_cacao_1890	XP_007039595.2; XP_017971816.1; XP_017985067.1; XP_007051547.1; XP_017973183.1	613; 613; 555; 609; 641	Pfam	PF02212, PF00350, PF01031; PF00350, PF01031, PF02212; PF00350, PF01031, PF02212; PF00350, PF01031, PF02212; PF01031, PF00350, PF02212	Dynamin GTPase effector domain, Dynamin family, Dynamin central region; Dynamin family, Dynamin central region, Dynamin GTPase effector domain; Dynamin family, Dynamin central region, Dynamin GTPase effector domain; Dynamin family, Dynamin central region, Dynamin GTPase effector domain; Dynamin central region, Dynamin family, Dynamin GTPase effector domain	IPR003130, IPR045063, IPR000375; IPR045063, IPR000375, IPR003130; IPR045063, IPR000375, IPR003130; IPR045063, IPR000375, IPR003130; IPR000375, IPR045063, IPR003130	Dynamin GTPase effector, Dynamin, N-terminal, Dynamin stalk domain; Dynamin, N-terminal, Dynamin stalk domain, Dynamin GTPase effector; Dynamin, N-terminal, Dynamin stalk domain, Dynamin GTPase effector; Dynamin, N-terminal, Dynamin stalk domain, Dynamin GTPase effector; Dynamin stalk domain, Dynamin, N-terminal, Dynamin GTPase effector
hsd_id_Theobroma_cacao_1891	XP_007039618.2; XP_007052407.2	203; 200	Pfam	PF02823; PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain; ATP synthase, Delta/Epsilon chain, beta-sandwich domain	IPR020546; IPR020546	ATP synthase, F1 complex, delta/epsilon subunit, N-terminal; ATP synthase, F1 complex, delta/epsilon subunit, N-terminal
hsd_id_Theobroma_cacao_1892	XP_007039641.1; XP_007052392.1	285; 288	Pfam	PF01214; PF01214	Casein kinase II regulatory subunit; Casein kinase II regulatory subunit	IPR000704; IPR000704	Casein kinase II, regulatory subunit; Casein kinase II, regulatory subunit
hsd_id_Theobroma_cacao_1893	XP_007039660.2; XP_007052380.2	343; 329	Pfam	PF00160; PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	IPR002130; IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
hsd_id_Theobroma_cacao_1894	XP_007039671.2; XP_017985025.1	574; 584	Pfam	PF13906, PF13520; PF13520, PF13906	C-terminus of AA_permease, Amino acid permease; Amino acid permease, C-terminus of AA_permease	IPR029485, IPR002293; IPR002293, IPR029485	Cationic amino acid transporter, C-terminal, Amino acid/polyamine transporter I; Amino acid/polyamine transporter I, Cationic amino acid transporter, C-terminal
hsd_id_Theobroma_cacao_1895	XP_007039691.2; XP_007039694.2	250; 252	Pfam	PF03330, PF01357; PF03330, PF01357	Lytic transglycolase, Expansin C-terminal domain; Lytic transglycolase, Expansin C-terminal domain	IPR009009, IPR007117; IPR009009, IPR007117	RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain; RlpA-like protein, double-psi beta-barrel domain, Expansin, cellulose-binding-like domain
hsd_id_Theobroma_cacao_1896	XP_007039708.2; XP_017972227.1	242; 241	Pfam	PF01245; PF01245	Ribosomal protein L19; Ribosomal protein L19	IPR001857; IPR001857	Ribosomal protein L19; Ribosomal protein L19
hsd_id_Theobroma_cacao_1897	XP_007039722.2; XP_017978783.1	350; 375	Pfam	PF04774, PF09598; PF04774, PF09598	Hyaluronan / mRNA binding family, Stm1; Hyaluronan / mRNA binding family, Stm1	IPR006861, IPR019084; IPR006861, IPR019084	Hyaluronan/mRNA-binding protein, Stm1-like, N-terminal; Hyaluronan/mRNA-binding protein, Stm1-like, N-terminal
hsd_id_Theobroma_cacao_1898	XP_007039742.2; XP_017982241.1	365; 345	Pfam	PF00293, PF18290; PF00293, PF18290	NUDIX domain, Nudix hydrolase domain; NUDIX domain, Nudix hydrolase domain	IPR000086, IPR040618; IPR000086, IPR040618	NUDIX hydrolase domain, Pre-nudix hydrolase domain; NUDIX hydrolase domain, Pre-nudix hydrolase domain
hsd_id_Theobroma_cacao_1899	XP_007039750.2; XP_017969576.1	364; 338	Pfam	PF02089; PF02089	Palmitoyl protein thioesterase; Palmitoyl protein thioesterase	-; -	-; -
hsd_id_Theobroma_cacao_1900	XP_007039752.2; XP_017972212.1	612; 578	Pfam	PF03107; PF03107	C1 domain; C1 domain	IPR004146; IPR004146	DC1; DC1
hsd_id_Theobroma_cacao_1901	XP_007039762.2; XP_007052281.2	300; 295	Pfam	PF04618, PF00046, PF02183; PF00046, PF02183, PF04618	HD-ZIP protein N terminus, Homeodomain, Homeobox associated leucine zipper; Homeodomain, Homeobox associated leucine zipper, HD-ZIP protein N terminus	IPR006712, IPR001356, IPR003106; IPR001356, IPR003106, IPR006712	HD-ZIP protein, N-terminal, Homeobox domain, Leucine zipper, homeobox-associated; Homeobox domain, Leucine zipper, homeobox-associated, HD-ZIP protein, N-terminal
hsd_id_Theobroma_cacao_1902	XP_007039769.2; XP_017973180.1; XP_017982006.1	305; 313; 338	Pfam	PF03171, PF14226; PF03171, PF14226; PF03171, PF14226	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR044861, IPR026992; IPR044861, IPR026992; IPR044861, IPR026992	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_1903	XP_007039792.1; XP_017974094.1	206; 204	Pfam	PF00827; PF00827	Ribosomal L15; Ribosomal L15	IPR000439; IPR000439	Ribosomal protein L15e; Ribosomal protein L15e
hsd_id_Theobroma_cacao_1904	XP_007039814.2; XP_017981684.1; XP_017970925.1	551; 581; 603	Pfam	PF10250; PF10250; PF10250	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase	IPR019378; IPR019378; IPR019378	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase
hsd_id_Theobroma_cacao_1905	XP_007039816.2; XP_007052204.2	359; 358	Pfam	PF01471, PF00413; PF01471, PF00413	Putative peptidoglycan binding domain, Matrixin; Putative peptidoglycan binding domain, Matrixin	IPR002477, IPR001818; IPR002477, IPR001818	Peptidoglycan binding-like, Peptidase M10, metallopeptidase; Peptidoglycan binding-like, Peptidase M10, metallopeptidase
hsd_id_Theobroma_cacao_1906	XP_007039825.2; XP_017977973.1	360; 347	Pfam	PF02042; PF02042	RWP-RK domain; RWP-RK domain	IPR003035; IPR003035	RWP-RK domain; RWP-RK domain
hsd_id_Theobroma_cacao_1907	XP_007039830.2; XP_017985436.1	1396; 1471	Pfam	PF12931, PF12932; PF12931, PF12932	Sec23-binding domain of Sec16, Vesicle coat trafficking protein Sec16 mid-region; Sec23-binding domain of Sec16, Vesicle coat trafficking protein Sec16 mid-region	IPR024298, IPR024340; IPR024298, IPR024340	Ancestral coatomer element 1, Sec16/Sec31, Sec16, central conserved domain; Ancestral coatomer element 1, Sec16/Sec31, Sec16, central conserved domain
hsd_id_Theobroma_cacao_1908	XP_007039841.2; XP_017969440.1; XP_017982109.1	362; 362; 379	Pfam	PF01095; PF01095; PF01095	Pectinesterase; Pectinesterase; Pectinesterase	IPR000070; IPR000070; IPR000070	Pectinesterase, catalytic; Pectinesterase, catalytic; Pectinesterase, catalytic
hsd_id_Theobroma_cacao_1909	XP_007039858.2; XP_017974095.1	214; 212	Pfam	PF00011; PF00011	Hsp20/alpha crystallin family; Hsp20/alpha crystallin family	IPR002068; IPR002068	Alpha crystallin/Hsp20 domain; Alpha crystallin/Hsp20 domain
hsd_id_Theobroma_cacao_1910	XP_007039906.2; XP_017973445.1; XP_007037463.2	476; 480; 457	Pfam	PF00743; PF00743; PF00743	Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like	IPR020946; IPR020946; IPR020946	Flavin monooxygenase-like; Flavin monooxygenase-like; Flavin monooxygenase-like
hsd_id_Theobroma_cacao_1911	XP_007039952.2; XP_017973065.1	206; 196	Pfam	PF04043; PF04043	Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor	IPR006501; IPR006501	Pectinesterase inhibitor domain; Pectinesterase inhibitor domain
hsd_id_Theobroma_cacao_1912	XP_007039962.2; XP_017981863.1; XP_007039963.2; XP_017972954.1; XP_017972990.1	534; 534; 534; 537; 443	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_1913	XP_007039980.1; XP_007052070.1	216; 216	Pfam	PF07279; PF07279	Protein of unknown function (DUF1442); Protein of unknown function (DUF1442)	IPR009902; IPR009902	Protein of unknown function DUF1442; Protein of unknown function DUF1442
hsd_id_Theobroma_cacao_1914	XP_007039994.2; XP_017972898.1	786; 781	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1915	XP_007039995.2; XP_007052056.2; XP_017977491.1; XP_017969702.1; XP_017971725.1	304; 332; 299; 289; 283	Pfam	PF04116; PF04116; PF04116; PF04116; PF04116	Fatty acid hydroxylase superfamily; Fatty acid hydroxylase superfamily; Fatty acid hydroxylase superfamily; Fatty acid hydroxylase superfamily; Fatty acid hydroxylase superfamily	IPR006694; IPR006694; IPR006694; IPR006694; IPR006694	Fatty acid hydroxylase; Fatty acid hydroxylase; Fatty acid hydroxylase; Fatty acid hydroxylase; Fatty acid hydroxylase
hsd_id_Theobroma_cacao_1916	XP_007040013.2; XP_007052043.2; XP_017973009.1; XP_017985458.1; XP_017981459.1; XP_017973420.1; XP_017982416.1; XP_017977838.1; XP_007040206.2; XP_007030487.1	331; 328; 341; 339; 366; 386; 394; 387; 341; 349	Pfam	PF03479; PF03479; PF03479; PF03479; PF03479; PF03479; PF03479; PF03479; PF03479; PF03479	Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain; Plants and Prokaryotes Conserved (PCC) domain	IPR005175; IPR005175; IPR005175; IPR005175; IPR005175; IPR005175; IPR005175; IPR005175; IPR005175; IPR005175	PPC domain; PPC domain; PPC domain; PPC domain; PPC domain; PPC domain; PPC domain; PPC domain; PPC domain; PPC domain
hsd_id_Theobroma_cacao_1917	XP_007040036.2; XP_017972956.1	544; 534	Pfam	PF00155; PF00155	Aminotransferase class I and II; Aminotransferase class I and II	IPR004839; IPR004839	Aminotransferase, class I/classII; Aminotransferase, class I/classII
hsd_id_Theobroma_cacao_1918	XP_007040038.1; XP_017972962.1	524; 518	Pfam	PF12214; PF12214	Cell cycle regulated microtubule associated protein; Cell cycle regulated microtubule associated protein	IPR027330; IPR027330	TPX2 central domain; TPX2 central domain
hsd_id_Theobroma_cacao_1919	XP_007040049.2; XP_017973879.1; XP_017973878.1	500; 488; 495	Pfam	PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_1920	XP_007040061.2; XP_007040062.1; XP_007038520.1; XP_017973035.1	254; 259; 256; 276	Pfam	PF00010; PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_1921	XP_007040108.1; XP_017985479.1	697; 699	Pfam	PF03105, PF07690; PF07690, PF03105	SPX domain, Major Facilitator Superfamily; Major Facilitator Superfamily, SPX domain	IPR004331, IPR011701; IPR011701, IPR004331	SPX domain, Major facilitator superfamily; Major facilitator superfamily, SPX domain
hsd_id_Theobroma_cacao_1922	XP_007040144.1; XP_007051906.1	381; 389	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_1923	XP_007040153.2; XP_007038652.2	174; 175	Pfam	PF04979; PF04979	Protein phosphatase inhibitor 2 (IPP-2); Protein phosphatase inhibitor 2 (IPP-2)	IPR007062; IPR007062	Protein phosphatase inhibitor 2 (IPP-2); Protein phosphatase inhibitor 2 (IPP-2)
hsd_id_Theobroma_cacao_1924	XP_007040156.1; XP_017973886.1; XP_017984843.1	350; 348; 366	Pfam	PF16363; PF16363; PF16363	GDP-mannose 4,6 dehydratase; GDP-mannose 4,6 dehydratase; GDP-mannose 4,6 dehydratase	IPR016040; IPR016040; IPR016040	NAD(P)-binding domain; NAD(P)-binding domain; NAD(P)-binding domain
hsd_id_Theobroma_cacao_1925	XP_007040160.2; XP_007040162.2; XP_017974097.1; XP_007040164.2; XP_007040165.2; XP_017972629.1	225; 224; 224; 224; 240; 175	Pfam	PF00314; PF00314; PF00314; PF00314; PF00314; PF00314	Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family	IPR001938; IPR001938; IPR001938; IPR001938; IPR001938; IPR001938	Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family; Thaumatin family
hsd_id_Theobroma_cacao_1926	XP_007040166.1; XP_017984187.1	148; 151	Pfam	PF00168; PF00168	C2 domain; C2 domain	IPR000008; IPR000008	C2 domain; C2 domain
hsd_id_Theobroma_cacao_1927	XP_007040170.2; XP_007051576.2	837; 793	Pfam	PF00271, PF00270; PF00270, PF00271	Helicase conserved C-terminal domain, DEAD/DEAH box helicase; DEAD/DEAH box helicase, Helicase conserved C-terminal domain	IPR001650, IPR011545; IPR011545, IPR001650	Helicase, C-terminal, DEAD/DEAH box helicase domain; DEAD/DEAH box helicase domain, Helicase, C-terminal
hsd_id_Theobroma_cacao_1928	XP_007040264.1; XP_007051789.1	546; 538	Pfam	PF02225, PF04258; PF02225, PF04258	PA domain, Signal peptide peptidase; PA domain, Signal peptide peptidase	IPR003137, IPR007369; IPR003137, IPR007369	PA domain, Peptidase A22B, signal peptide peptidase; PA domain, Peptidase A22B, signal peptide peptidase
hsd_id_Theobroma_cacao_1929	XP_007040292.1; XP_017978212.1	200; 223	Pfam	PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_1930	XP_007040307.2; XP_017984712.1	250; 284	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1931	XP_007040372.1; XP_007051691.2	219; 220	Pfam	PF03168; PF03168	Late embryogenesis abundant protein; Late embryogenesis abundant protein	IPR004864; IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup
hsd_id_Theobroma_cacao_1932	XP_007040379.2; XP_017972891.1	831; 837	Pfam	PF17862, PF00004; PF00004, PF17862	AAA+ lid domain, ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA), AAA+ lid domain	IPR041569, IPR003959; IPR003959, IPR041569	AAA ATPase, AAA+ lid domain, ATPase, AAA-type, core; ATPase, AAA-type, core, AAA ATPase, AAA+ lid domain
hsd_id_Theobroma_cacao_1933	XP_007040401.2; XP_007040398.1; XP_017972371.1; XP_017972306.1	183; 184; 191; 191	Pfam	PF03018; PF03018; PF03018; PF03018	Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein	IPR004265; IPR004265; IPR004265; IPR004265	Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein
hsd_id_Theobroma_cacao_1934	XP_007040409.2; XP_017970678.1	118; 117	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1935	XP_007040434.1; XP_007051629.2	72; 75	Pfam	PF06376; PF06376	Arabinogalactan peptide; Arabinogalactan peptide	IPR009424; IPR009424	Arabinogalactan protein 16/20/22/41; Arabinogalactan protein 16/20/22/41
hsd_id_Theobroma_cacao_1936	XP_007040437.2; XP_017984813.1	721; 683	Pfam	PF06760, PF07714; PF06760, PF07714	Protein of unknown function (DUF1221), Protein tyrosine and serine/threonine kinase; Protein of unknown function (DUF1221), Protein tyrosine and serine/threonine kinase	IPR010632, IPR001245; IPR010632, IPR001245	Domain of unknown function DUF1221, Serine-threonine/tyrosine-protein kinase, catalytic domain; Domain of unknown function DUF1221, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_1937	XP_007040506.2; XP_017971246.1	626; 626	Pfam	PF09478, PF00759; PF00759, PF09478	Carbohydrate binding domain CBM49, Glycosyl hydrolase family 9; Glycosyl hydrolase family 9, Carbohydrate binding domain CBM49	IPR019028, IPR001701; IPR001701, IPR019028	Carbohydrate binding domain CBM49, Glycoside hydrolase family 9; Glycoside hydrolase family 9, Carbohydrate binding domain CBM49
hsd_id_Theobroma_cacao_1938	XP_007040594.2; XP_007051512.2	588; 576	Pfam	PF13424, PF17874; PF17874, PF13424	Tetratricopeptide repeat, MalT-like TPR region; MalT-like TPR region, Tetratricopeptide repeat	-, IPR041617; IPR041617, -	-, MalT-like TPR region; MalT-like TPR region, -
hsd_id_Theobroma_cacao_1939	XP_007040642.2; XP_017975298.1; XP_017981820.1	1250; 1249; 1241	Pfam	PF00664, PF00005; PF00005, PF00664; PF00664, PF00005	ABC transporter transmembrane region, ABC transporter; ABC transporter, ABC transporter transmembrane region; ABC transporter transmembrane region, ABC transporter	IPR011527, IPR003439; IPR003439, IPR011527; IPR011527, IPR003439	ABC transporter type 1, transmembrane domain, ABC transporter-like, ATP-binding domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter type 1, transmembrane domain, ABC transporter-like, ATP-binding domain
hsd_id_Theobroma_cacao_1940	XP_007040748.2; XP_017973484.1	800; 813	Pfam	PF04578, PF13968; PF13968, PF04578	Protein of unknown function, DUF594, Domain of unknown function (DUF4220); Domain of unknown function (DUF4220), Protein of unknown function, DUF594	IPR007658, IPR025315; IPR025315, IPR007658	Protein of unknown function DUF594, Domain of unknown function DUF4220; Domain of unknown function DUF4220, Protein of unknown function DUF594
hsd_id_Theobroma_cacao_1941	XP_007040765.2; XP_017978556.1	121; 122	Pfam	PF16845; PF16845	Aspartic acid proteinase inhibitor; Aspartic acid proteinase inhibitor	IPR000010; IPR000010	Cystatin domain; Cystatin domain
hsd_id_Theobroma_cacao_1942	XP_007040781.2; XP_017975883.1	289; 288	Pfam	PF00249, PF14379; PF14379, PF00249	Myb-like DNA-binding domain, MYB-CC type transfactor, LHEQLE motif; MYB-CC type transfactor, LHEQLE motif, Myb-like DNA-binding domain	IPR017930, IPR025756; IPR025756, IPR017930	Myb domain, MYB-CC type transcription factor, LHEQLE-containing domain; MYB-CC type transcription factor, LHEQLE-containing domain, Myb domain
hsd_id_Theobroma_cacao_1943	XP_007040782.2; XP_007040784.2	312; 313	Pfam	PF05368; PF05368	NmrA-like family; NmrA-like family	IPR008030; IPR008030	NmrA-like domain; NmrA-like domain
hsd_id_Theobroma_cacao_1944	XP_007040797.1; XP_017984008.1	215; 215	Pfam	PF03637; PF03637	Mob1/phocein family; Mob1/phocein family	IPR005301; IPR005301	MOB kinase activator family; MOB kinase activator family
hsd_id_Theobroma_cacao_1945	XP_007040857.2; XP_017976018.1; XP_007042581.2; XP_017976021.1	117; 152; 136; 168	Pfam	PF02201; PF02201; PF02201; PF02201	SWIB/MDM2 domain; SWIB/MDM2 domain; SWIB/MDM2 domain; SWIB/MDM2 domain	IPR003121; IPR003121; IPR003121; IPR003121	SWIB/MDM2 domain; SWIB/MDM2 domain; SWIB/MDM2 domain; SWIB/MDM2 domain
hsd_id_Theobroma_cacao_1946	XP_007040897.2; XP_007051814.1	695; 701	Pfam	PF05687, PF01373; PF01373, PF05687	BES1/BZR1 plant transcription factor, N-terminal, Glycosyl hydrolase family 14; Glycosyl hydrolase family 14, BES1/BZR1 plant transcription factor, N-terminal	IPR008540, IPR001554; IPR001554, IPR008540	BES1/BZR1 plant transcription factor, N-terminal, Glycoside hydrolase, family 14; Glycoside hydrolase, family 14, BES1/BZR1 plant transcription factor, N-terminal
hsd_id_Theobroma_cacao_1947	XP_007040922.1; XP_017969955.1; XP_017978897.1	368; 370; 351	Pfam	PF14604; PF14604; PF14604	Variant SH3 domain; Variant SH3 domain; Variant SH3 domain	IPR001452; IPR001452; IPR001452	SH3 domain; SH3 domain; SH3 domain
hsd_id_Theobroma_cacao_1948	XP_007040924.2; XP_017973802.1	596; 601	Pfam	PF08263, PF00069, PF13855; PF08263, PF00069, PF13855	Leucine rich repeat N-terminal domain, Protein kinase domain, Leucine rich repeat; Leucine rich repeat N-terminal domain, Protein kinase domain, Leucine rich repeat	IPR013210, IPR000719, IPR001611; IPR013210, IPR000719, IPR001611	Leucine-rich repeat-containing N-terminal, plant-type, Protein kinase domain, Leucine-rich repeat; Leucine-rich repeat-containing N-terminal, plant-type, Protein kinase domain, Leucine-rich repeat
hsd_id_Theobroma_cacao_1949	XP_007040937.1; XP_017982565.1	126; 88	Pfam	PF00887; PF00887	Acyl CoA binding protein; Acyl CoA binding protein	IPR000582; IPR000582	Acyl-CoA-binding protein, ACBP; Acyl-CoA-binding protein, ACBP
hsd_id_Theobroma_cacao_1950	XP_007040977.2; XP_017975795.1	380; 376	Pfam	PF16913; PF16913	Purine nucleobase transmembrane transport; Purine nucleobase transmembrane transport	-; -	-; -
hsd_id_Theobroma_cacao_1951	XP_007041003.2; XP_017969775.1	250; 250	Pfam	PF00227, PF10584; PF00227, PF10584	Proteasome subunit, Proteasome subunit A N-terminal signature; Proteasome subunit, Proteasome subunit A N-terminal signature	IPR001353, IPR000426; IPR001353, IPR000426	Proteasome, subunit alpha/beta, Proteasome alpha-subunit, N-terminal domain; Proteasome, subunit alpha/beta, Proteasome alpha-subunit, N-terminal domain
hsd_id_Theobroma_cacao_1952	XP_007041009.2; XP_007041010.2	509; 499	Pfam	PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_1953	XP_007041099.2; XP_017969423.1	213; 221	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1954	XP_007041123.2; XP_017970730.1	1624; 1624	Pfam	PF00005, PF00664; PF00005, PF00664	ABC transporter, ABC transporter transmembrane region; ABC transporter, ABC transporter transmembrane region	IPR003439, IPR011527; IPR003439, IPR011527	ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain
hsd_id_Theobroma_cacao_1955	XP_007041134.2; XP_017971109.1; XP_017970697.1; XP_017980352.1	604; 591; 588; 586	Pfam	PF13520, PF13906; PF13906, PF13520; PF13520, PF13906; PF13906, PF13520	Amino acid permease, C-terminus of AA_permease; C-terminus of AA_permease, Amino acid permease; Amino acid permease, C-terminus of AA_permease; C-terminus of AA_permease, Amino acid permease	IPR002293, IPR029485; IPR029485, IPR002293; IPR002293, IPR029485; IPR029485, IPR002293	Amino acid/polyamine transporter I, Cationic amino acid transporter, C-terminal; Cationic amino acid transporter, C-terminal, Amino acid/polyamine transporter I; Amino acid/polyamine transporter I, Cationic amino acid transporter, C-terminal; Cationic amino acid transporter, C-terminal, Amino acid/polyamine transporter I
hsd_id_Theobroma_cacao_1956	XP_007041139.2; XP_007046258.2	246; 220	Pfam	PF08718; PF08718	Glycolipid transfer protein (GLTP); Glycolipid transfer protein (GLTP)	IPR014830; IPR014830	Glycolipid transfer protein domain; Glycolipid transfer protein domain
hsd_id_Theobroma_cacao_1957	XP_007041172.2; XP_017980871.1; XP_007044007.1	294; 304; 289	Pfam	PF04669; PF04669; PF04669	Polysaccharide biosynthesis; Polysaccharide biosynthesis; Polysaccharide biosynthesis	IPR021148; IPR021148; IPR021148	Polysaccharide biosynthesis domain; Polysaccharide biosynthesis domain; Polysaccharide biosynthesis domain
hsd_id_Theobroma_cacao_1958	XP_007041201.2; XP_017978862.1	521; 523	Pfam	PF03467; PF03467	Smg-4/UPF3 family; Smg-4/UPF3 family	IPR005120; IPR005120	UPF3 domain; UPF3 domain
hsd_id_Theobroma_cacao_1959	XP_007041217.1; XP_017981632.1	389; 389	Pfam	PF00297; PF00297	Ribosomal protein L3; Ribosomal protein L3	IPR000597; IPR000597	Ribosomal protein L3; Ribosomal protein L3
hsd_id_Theobroma_cacao_1960	XP_007041222.2; XP_007030715.1; XP_007014623.2; XP_017972071.1; XP_017982338.1; XP_017979165.1; XP_007035932.2	573; 622; 710; 627; 621; 655; 659	Pfam	PF04146; PF04146; PF04146; PF04146; PF04146; PF04146; PF04146	YT521-B-like domain; YT521-B-like domain; YT521-B-like domain; YT521-B-like domain; YT521-B-like domain; YT521-B-like domain; YT521-B-like domain	IPR007275; IPR007275; IPR007275; IPR007275; IPR007275; IPR007275; IPR007275	YTH domain; YTH domain; YTH domain; YTH domain; YTH domain; YTH domain; YTH domain
hsd_id_Theobroma_cacao_1961	XP_007041252.2; XP_017981033.1	608; 583	Pfam	PF12146; PF12146	Serine aminopeptidase, S33; Serine aminopeptidase, S33	IPR022742; IPR022742	Serine aminopeptidase, S33; Serine aminopeptidase, S33
hsd_id_Theobroma_cacao_1962	XP_007041259.2; XP_017970837.1; XP_007048790.2; XP_017970677.1	201; 228; 254; 287	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_1963	XP_007041319.1; XP_017983360.1; XP_017971072.1; XP_017975242.1; XP_017979737.1	344; 349; 334; 321; 359	Pfam	PF05653; PF05653; PF05653; PF05653; PF05653	Magnesium transporter NIPA; Magnesium transporter NIPA; Magnesium transporter NIPA; Magnesium transporter NIPA; Magnesium transporter NIPA	IPR008521; IPR008521; IPR008521; IPR008521; IPR008521	Magnesium transporter NIPA; Magnesium transporter NIPA; Magnesium transporter NIPA; Magnesium transporter NIPA; Magnesium transporter NIPA
hsd_id_Theobroma_cacao_1964	XP_007041381.2; XP_017981499.1	54; 54	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1965	XP_007041383.1; XP_007047092.2	152; 154	Pfam	PF04535; PF04535	Domain of unknown function (DUF588); Domain of unknown function (DUF588)	IPR006702; IPR006702	Casparian strip membrane protein domain; Casparian strip membrane protein domain
hsd_id_Theobroma_cacao_1966	XP_007041393.1; XP_017984500.1	163; 153	Pfam	PF00042; PF00042	Globin; Globin	IPR000971; IPR000971	Globin; Globin
hsd_id_Theobroma_cacao_1967	XP_007041398.2; XP_007047079.2	617; 619	Pfam	PF14389, PF04784; PF04784, PF14389	Leucine-zipper of ternary complex factor MIP1, Protein of unknown function, DUF547; Protein of unknown function, DUF547, Leucine-zipper of ternary complex factor MIP1	IPR025757, IPR006869; IPR006869, IPR025757	Ternary complex factor MIP1, leucine-zipper, Domain of unknown function DUF547; Domain of unknown function DUF547, Ternary complex factor MIP1, leucine-zipper
hsd_id_Theobroma_cacao_1968	XP_007041433.1; XP_007047619.1; XP_017980843.1	259; 260; 261	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_1969	XP_007041476.2; XP_007047669.2	512; 543	Pfam	PF07690; PF07690	Major Facilitator Superfamily; Major Facilitator Superfamily	IPR011701; IPR011701	Major facilitator superfamily; Major facilitator superfamily
hsd_id_Theobroma_cacao_1970	XP_007041480.2; XP_007047682.2	385; 381	Pfam	PF10607, PF13445; PF13445, PF10607	CTLH/CRA C-terminal to LisH motif domain, RING-type zinc-finger; RING-type zinc-finger, CTLH/CRA C-terminal to LisH motif domain	IPR024964, IPR027370; IPR027370, IPR024964	CTLH/CRA C-terminal to LisH motif domain, RING-type zinc-finger, LisH dimerisation motif; RING-type zinc-finger, LisH dimerisation motif, CTLH/CRA C-terminal to LisH motif domain
hsd_id_Theobroma_cacao_1971	XP_007041485.2; XP_007042224.2	290; 358	Pfam	PF03181; PF03181	BURP domain; BURP domain	IPR004873; IPR004873	BURP domain; BURP domain
hsd_id_Theobroma_cacao_1972	XP_007041489.2; XP_007046709.1	455; 517	Pfam	PF13532; PF13532	2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily	IPR027450; IPR027450	Alpha-ketoglutarate-dependent dioxygenase AlkB-like; Alpha-ketoglutarate-dependent dioxygenase AlkB-like
hsd_id_Theobroma_cacao_1973	XP_007041518.2; XP_007041519.2	269; 283	Pfam	PF01151; PF01151	GNS1/SUR4 family; GNS1/SUR4 family	IPR002076; IPR002076	ELO family; ELO family
hsd_id_Theobroma_cacao_1974	XP_007041525.2; XP_017970127.1	247; 247	Pfam	PF04755; PF04755	PAP_fibrillin; PAP_fibrillin	IPR006843; IPR006843	Plastid lipid-associated protein/fibrillin conserved domain; Plastid lipid-associated protein/fibrillin conserved domain
hsd_id_Theobroma_cacao_1975	XP_007041578.2; XP_017982355.1; XP_017981311.1; XP_017975935.1; XP_007049810.2	261; 253; 277; 237; 236	Pfam	PF01918; PF01918; PF01918; PF01918; PF01918	Alba; Alba; Alba; Alba; Alba	IPR002775; IPR002775; IPR002775; IPR002775; IPR002775	DNA/RNA-binding protein Alba-like; DNA/RNA-binding protein Alba-like; DNA/RNA-binding protein Alba-like; DNA/RNA-binding protein Alba-like; DNA/RNA-binding protein Alba-like
hsd_id_Theobroma_cacao_1976	XP_007041589.2; XP_007048228.2; XP_007048229.2	377; 377; 358	Pfam	PF00892; PF00892; PF00892	EamA-like transporter family; EamA-like transporter family; EamA-like transporter family	IPR000620; IPR000620; IPR000620	EamA domain; EamA domain; EamA domain
hsd_id_Theobroma_cacao_1977	XP_007041635.1; XP_017981565.1	480; 492	Pfam	PF03619; PF03619	Organic solute transporter Ostalpha; Organic solute transporter Ostalpha	IPR005178; IPR005178	Organic solute transporter subunit alpha/Transmembrane protein 184; Organic solute transporter subunit alpha/Transmembrane protein 184
hsd_id_Theobroma_cacao_1978	XP_007041658.2; XP_017970319.1; XP_017970653.1; XP_007041664.2; XP_007041661.2; XP_017970320.1; XP_007041663.2	292; 294; 295; 312; 294; 289; 287	Pfam	PF03087; PF03087; PF03087; PF03087; PF03087; PF03087; PF03087	Arabidopsis protein of unknown function; Arabidopsis protein of unknown function; Arabidopsis protein of unknown function; Arabidopsis protein of unknown function; Arabidopsis protein of unknown function; Arabidopsis protein of unknown function; Arabidopsis protein of unknown function	IPR004320; IPR004320; IPR004320; IPR004320; IPR004320; IPR004320; IPR004320	Protein of unknown function DUF241, plant; Protein of unknown function DUF241, plant; Protein of unknown function DUF241, plant; Protein of unknown function DUF241, plant; Protein of unknown function DUF241, plant; Protein of unknown function DUF241, plant; Protein of unknown function DUF241, plant
hsd_id_Theobroma_cacao_1979	XP_007041668.1; XP_007046548.1	321; 311	Pfam	PF00187, PF00182; PF00187, PF00182	Chitin recognition protein, Chitinase class I; Chitin recognition protein, Chitinase class I	IPR001002, IPR000726; IPR001002, IPR000726	Chitin-binding, type 1, Glycoside hydrolase, family 19, catalytic; Chitin-binding, type 1, Glycoside hydrolase, family 19, catalytic
hsd_id_Theobroma_cacao_1980	XP_007041674.2; XP_007041677.2; XP_017970293.1	636; 654; 704	Pfam	PF04578, PF13968; PF13968, PF04578; PF04578, PF13968	Protein of unknown function, DUF594, Domain of unknown function (DUF4220); Domain of unknown function (DUF4220), Protein of unknown function, DUF594; Protein of unknown function, DUF594, Domain of unknown function (DUF4220)	IPR007658, IPR025315; IPR025315, IPR007658; IPR007658, IPR025315	Protein of unknown function DUF594, Domain of unknown function DUF4220; Domain of unknown function DUF4220, Protein of unknown function DUF594; Protein of unknown function DUF594, Domain of unknown function DUF4220
hsd_id_Theobroma_cacao_1981	XP_007041702.1; XP_017980770.1; XP_017980029.1; XP_017979373.1; XP_007013150.2; XP_017982274.1	304; 320; 318; 378; 304; 304	Pfam	PF03168; PF03168; PF03168; PF03168; PF03168; PF03168	Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein	IPR004864; IPR004864; IPR004864; IPR004864; IPR004864; IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup
hsd_id_Theobroma_cacao_1982	XP_007041768.1; XP_017981574.1	725; 745	Pfam	PF04782, PF04783; PF04783, PF04782	Protein of unknown function (DUF632), Protein of unknown function (DUF630); Protein of unknown function (DUF630), Protein of unknown function (DUF632)	IPR006867, IPR006868; IPR006868, IPR006867	Domain of unknown function DUF632, Domain of unknown function DUF630; Domain of unknown function DUF630, Domain of unknown function DUF632
hsd_id_Theobroma_cacao_1983	XP_007041782.2; XP_007048198.2	581; 568	Pfam	PF15519, PF00076; PF15519, PF00076	linker between RRM2 and RRM3 domains in RBM39 protein, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); linker between RRM2 and RRM3 domains in RBM39 protein, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR029123, IPR000504; IPR029123, IPR000504	Splicing factor RBM39, linker, RNA recognition motif domain; Splicing factor RBM39, linker, RNA recognition motif domain
hsd_id_Theobroma_cacao_1984	XP_007041788.2; XP_017981309.1	484; 487	Pfam	PF01399, PF08375; PF01399, PF08375	PCI domain, Proteasome regulatory subunit C-terminal; PCI domain, Proteasome regulatory subunit C-terminal	IPR000717, IPR013586; IPR000717, IPR013586	Proteasome component (PCI) domain, 26S proteasome regulatory subunit, C-terminal; Proteasome component (PCI) domain, 26S proteasome regulatory subunit, C-terminal
hsd_id_Theobroma_cacao_1985	XP_007041817.2; XP_017971397.1	418; 421	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1986	XP_007041864.1; XP_007046652.1	249; 249	Pfam	PF00227, PF10584; PF10584, PF00227	Proteasome subunit, Proteasome subunit A N-terminal signature; Proteasome subunit A N-terminal signature, Proteasome subunit	IPR001353, IPR000426; IPR000426, IPR001353	Proteasome, subunit alpha/beta, Proteasome alpha-subunit, N-terminal domain; Proteasome alpha-subunit, N-terminal domain, Proteasome, subunit alpha/beta
hsd_id_Theobroma_cacao_1987	XP_007041874.1; XP_017969888.1	399; 411	Pfam	PF13519, PF02809; PF13519, PF02809	von Willebrand factor type A domain, Ubiquitin interaction motif; von Willebrand factor type A domain, Ubiquitin interaction motif	IPR002035, IPR003903; IPR002035, IPR003903	von Willebrand factor, type A, Ubiquitin interacting motif; von Willebrand factor, type A, Ubiquitin interacting motif
hsd_id_Theobroma_cacao_1988	XP_007041879.1; XP_007046677.2	556; 544	Pfam	PF06813; PF06813	Nodulin-like; Nodulin-like	IPR010658; IPR010658	Nodulin-like; Nodulin-like
hsd_id_Theobroma_cacao_1989	XP_007041907.2; XP_007041908.2; XP_017970570.1; XP_007041913.2; XP_017970573.1; XP_017970590.1; XP_007041910.2; XP_017970639.1; XP_017975991.1; XP_017985385.1; XP_007029061.1; XP_007029062.1; XP_007014759.1; XP_007014760.2; XP_007041904.2; XP_007008799.2; XP_007008798.2; XP_007041903.1; XP_007041902.2; XP_007037651.2	186; 178; 188; 186; 188; 188; 186; 189; 196; 197; 194; 195; 194; 188; 186; 188; 186; 189; 187; 174	Pfam	PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018; PF03018	Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein; Dirigent-like protein	IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265; IPR004265	Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein; Dirigent protein
hsd_id_Theobroma_cacao_1990	XP_007041914.2; XP_017977535.1; XP_017972033.1; XP_017970645.1	521; 563; 474; 411	Pfam	PF01425; PF01425; PF01425; PF01425	Amidase; Amidase; Amidase; Amidase	IPR023631; IPR023631; IPR023631; IPR023631	Amidase signature domain; Amidase signature domain; Amidase signature domain; Amidase signature domain
hsd_id_Theobroma_cacao_1991	XP_007041927.1; XP_007046692.2; XP_007021087.2; XP_017978791.1; XP_007043353.2; XP_007035086.1	345; 314; 235; 250; 231; 219	Pfam	PF00010; PF00010; PF00010; PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_1992	XP_007041948.1; XP_017970326.1	307; 320	Pfam	PF00230; PF00230	Major intrinsic protein; Major intrinsic protein	IPR000425; IPR000425	Major intrinsic protein; Major intrinsic protein
hsd_id_Theobroma_cacao_1993	XP_007042013.2; XP_007046738.2; XP_017984471.1	338; 356; 341	Pfam	PF02544; PF02544; PF02544	3-oxo-5-alpha-steroid 4-dehydrogenase; 3-oxo-5-alpha-steroid 4-dehydrogenase; 3-oxo-5-alpha-steroid 4-dehydrogenase	IPR001104; IPR001104; IPR001104	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal
hsd_id_Theobroma_cacao_1994	XP_007042038.1; XP_007046762.2	217; 252	Pfam	PF07798; PF07798	Protein of unknown function (DUF1640); Protein of unknown function (DUF1640)	IPR024461; IPR024461	Coiled-coil domain-containing protein 90-like; Coiled-coil domain-containing protein 90-like
hsd_id_Theobroma_cacao_1995	XP_007042039.2; XP_017974817.1; XP_007046300.1	251; 253; 256	Pfam	PF06351; PF06351; PF06351	Allene oxide cyclase; Allene oxide cyclase; Allene oxide cyclase	IPR009410; IPR009410; IPR009410	Allene oxide cyclase; Allene oxide cyclase; Allene oxide cyclase
hsd_id_Theobroma_cacao_1996	XP_007042083.1; XP_017981246.1	730; 728	Pfam	PF17834, PF01301; PF01301, PF17834	Beta-sandwich domain in beta galactosidase, Glycosyl hydrolases family 35; Glycosyl hydrolases family 35, Beta-sandwich domain in beta galactosidase	IPR041392, IPR031330; IPR031330, IPR041392	Beta-galactosidase, beta-sandwich domain, Glycoside hydrolase 35, catalytic domain; Glycoside hydrolase 35, catalytic domain, Beta-galactosidase, beta-sandwich domain
hsd_id_Theobroma_cacao_1997	XP_007042108.2; XP_017981457.1	436; 429	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_1998	XP_007042117.2; XP_017981301.1; XP_017971035.1; XP_017969294.1	626; 621; 586; 595	Pfam	PF03765, PF00650; PF03765, PF00650; PF00650, PF03765; PF00650, PF03765	CRAL/TRIO, N-terminal domain, CRAL/TRIO domain; CRAL/TRIO, N-terminal domain, CRAL/TRIO domain; CRAL/TRIO domain, CRAL/TRIO, N-terminal domain; CRAL/TRIO domain, CRAL/TRIO, N-terminal domain	IPR011074, IPR001251; IPR011074, IPR001251; IPR001251, IPR011074; IPR001251, IPR011074	CRAL/TRIO, N-terminal domain, CRAL-TRIO lipid binding domain; CRAL/TRIO, N-terminal domain, CRAL-TRIO lipid binding domain; CRAL-TRIO lipid binding domain, CRAL/TRIO, N-terminal domain; CRAL-TRIO lipid binding domain, CRAL/TRIO, N-terminal domain
hsd_id_Theobroma_cacao_1999	XP_007042189.2; XP_017981510.1	906; 911	Pfam	PF08263, PF07714, PF00560, PF13855; PF07714, PF08263, PF00560, PF13855	Leucine rich repeat N-terminal domain, Protein tyrosine and serine/threonine kinase, Leucine Rich Repeat, Leucine rich repeat; Protein tyrosine and serine/threonine kinase, Leucine rich repeat N-terminal domain, Leucine Rich Repeat, Leucine rich repeat	IPR013210, IPR001245, IPR001611, IPR001611; IPR001245, IPR013210, IPR001611, IPR001611	Leucine-rich repeat-containing N-terminal, plant-type, Serine-threonine/tyrosine-protein kinase, catalytic domain, Leucine-rich repeat, Leucine-rich repeat; Serine-threonine/tyrosine-protein kinase, catalytic domain, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat
hsd_id_Theobroma_cacao_2000	XP_007042270.2; XP_017982783.1	143; 150	Pfam	PF00111; PF00111	2Fe-2S iron-sulfur cluster binding domain; 2Fe-2S iron-sulfur cluster binding domain	IPR001041; IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain; 2Fe-2S ferredoxin-type iron-sulfur binding domain
hsd_id_Theobroma_cacao_2001	XP_007042272.2; XP_007046664.2	566; 532	Pfam	PF03094; PF03094	Mlo family; Mlo family	IPR004326; IPR004326	Mlo-related protein; Mlo-related protein
hsd_id_Theobroma_cacao_2002	XP_007042301.2; XP_007042308.2	448; 450	Pfam	PF02362; PF02362	B3 DNA binding domain; B3 DNA binding domain	IPR003340; IPR003340	B3 DNA binding domain; B3 DNA binding domain
hsd_id_Theobroma_cacao_2003	XP_007042326.2; XP_017971565.1; XP_007042329.2	346; 346; 365	Pfam	PF03171, PF14226; PF14226, PF03171; PF14226, PF03171	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily	IPR044861, IPR026992; IPR026992, IPR044861; IPR026992, IPR044861	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain
hsd_id_Theobroma_cacao_2004	XP_007042333.2; XP_017984855.1; XP_007047136.2; XP_007047134.2; XP_007047146.2; XP_007047147.2; XP_007047144.2; XP_007047142.2; XP_007047137.2; XP_007047141.1; XP_007047143.2	298; 260; 258; 262; 257; 304; 263; 266; 263; 258; 268	Pfam	PF12697; PF12697; PF12697; PF12697; PF12697; PF12697; PF12697; PF12697; PF12697; PF12697; PF12697	Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family; Alpha/beta hydrolase family	IPR000073; IPR000073; IPR000073; IPR000073; IPR000073; IPR000073; IPR000073; IPR000073; IPR000073; IPR000073; IPR000073	Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1
hsd_id_Theobroma_cacao_2005	XP_007042358.1; XP_017969314.1	376; 361	Pfam	PF00160, PF00515; PF00160, PF00515	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD, Tetratricopeptide repeat; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD, Tetratricopeptide repeat	IPR002130, IPR001440; IPR002130, IPR001440	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain, Tetratricopeptide repeat 1; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain, Tetratricopeptide repeat 1
hsd_id_Theobroma_cacao_2006	XP_007042437.1; XP_007047252.2	155; 176	Pfam	PF07939; PF07939	Protein of unknown function (DUF1685); Protein of unknown function (DUF1685)	IPR012881; IPR012881	Protein of unknown function DUF1685; Protein of unknown function DUF1685
hsd_id_Theobroma_cacao_2007	XP_007042470.2; XP_007047328.2	336; 337	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2008	XP_007042479.2; XP_007047342.2	230; 241	Pfam	PF00571; PF00571	CBS domain; CBS domain	IPR000644; IPR000644	CBS domain; CBS domain
hsd_id_Theobroma_cacao_2009	XP_007042486.2; XP_017975062.1	316; 315	Pfam	PF04669; PF04669	Polysaccharide biosynthesis; Polysaccharide biosynthesis	IPR021148; IPR021148	Polysaccharide biosynthesis domain; Polysaccharide biosynthesis domain
hsd_id_Theobroma_cacao_2010	XP_007042498.2; XP_017976763.1; XP_017981461.1; XP_017970111.1	393; 369; 365; 402	Pfam	PF02984, PF00134; PF00134, PF02984; PF00134, PF02984; PF02984, PF00134	Cyclin, C-terminal domain, Cyclin, N-terminal domain; Cyclin, N-terminal domain, Cyclin, C-terminal domain; Cyclin, N-terminal domain, Cyclin, C-terminal domain; Cyclin, C-terminal domain, Cyclin, N-terminal domain	IPR004367, IPR006671; IPR006671, IPR004367; IPR006671, IPR004367; IPR004367, IPR006671	Cyclin, C-terminal domain, Cyclin, N-terminal; Cyclin, N-terminal, Cyclin, C-terminal domain; Cyclin, N-terminal, Cyclin, C-terminal domain; Cyclin, C-terminal domain, Cyclin, N-terminal
hsd_id_Theobroma_cacao_2011	XP_007042508.2; XP_017980943.1; XP_017981115.1	259; 265; 300	Pfam	PF03629; PF03629; PF03629	Carbohydrate esterase, sialic acid-specific acetylesterase; Carbohydrate esterase, sialic acid-specific acetylesterase; Carbohydrate esterase, sialic acid-specific acetylesterase	IPR005181; IPR005181; IPR005181	Sialate O-acetylesterase domain; Sialate O-acetylesterase domain; Sialate O-acetylesterase domain
hsd_id_Theobroma_cacao_2012	XP_007042520.2; XP_007047393.2	781; 775	Pfam	PF13855, PF00069, PF00560, PF08263; PF08263, PF13855, PF00069, PF00560	Leucine rich repeat, Protein kinase domain, Leucine Rich Repeat, Leucine rich repeat N-terminal domain; Leucine rich repeat N-terminal domain, Leucine rich repeat, Protein kinase domain, Leucine Rich Repeat	IPR001611, IPR000719, IPR001611, IPR013210; IPR013210, IPR001611, IPR000719, IPR001611	Leucine-rich repeat, Protein kinase domain, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Protein kinase domain, Leucine-rich repeat
hsd_id_Theobroma_cacao_2013	XP_007042544.2; XP_017971154.1	419; 419	Pfam	PF01636; PF01636	Phosphotransferase enzyme family; Phosphotransferase enzyme family	IPR002575; IPR002575	Aminoglycoside phosphotransferase; Aminoglycoside phosphotransferase
hsd_id_Theobroma_cacao_2014	XP_007042546.2; XP_007042549.1; XP_017971156.1; XP_017971155.1	226; 226; 225; 234	Pfam	PF04450; PF04450; PF04450; PF04450	Peptidase of plants and bacteria; Peptidase of plants and bacteria; Peptidase of plants and bacteria; Peptidase of plants and bacteria	IPR007541; IPR007541; IPR007541; IPR007541	Uncharacterised protein family, basic secretory protein; Uncharacterised protein family, basic secretory protein; Uncharacterised protein family, basic secretory protein; Uncharacterised protein family, basic secretory protein
hsd_id_Theobroma_cacao_2015	XP_007042561.2; XP_017970786.1	843; 828	Pfam	PF14498; PF14498	Glycosyl hydrolase family 65, N-terminal domain; Glycosyl hydrolase family 65, N-terminal domain	IPR027414; IPR027414	Glycosyl hydrolase family 95, N-terminal domain; Glycosyl hydrolase family 95, N-terminal domain
hsd_id_Theobroma_cacao_2016	XP_007042567.2; XP_017981155.1	368; 391	Pfam	PF00134, PF02984; PF00134, PF02984	Cyclin, N-terminal domain, Cyclin, C-terminal domain; Cyclin, N-terminal domain, Cyclin, C-terminal domain	IPR006671, IPR004367; IPR006671, IPR004367	Cyclin, N-terminal, Cyclin, C-terminal domain; Cyclin, N-terminal, Cyclin, C-terminal domain
hsd_id_Theobroma_cacao_2017	XP_007042577.2; XP_007047445.2	813; 815	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2018	XP_007042594.2; XP_017982076.1	278; 191	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2019	XP_007042596.1; XP_007047469.1; XP_017971386.1	287; 303; 300	Pfam	PF13640; PF13640; PF13640	2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily	IPR044862; IPR044862; IPR044862	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain; Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain; Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain
hsd_id_Theobroma_cacao_2020	XP_007042600.2; XP_017981416.1	260; 252	Pfam	PF04117; PF04117	Mpv17 / PMP22 family; Mpv17 / PMP22 family	IPR007248; IPR007248	Mpv17/PMP22; Mpv17/PMP22
hsd_id_Theobroma_cacao_2021	XP_007042602.2; XP_007047482.2	354; 349	Pfam	PF12767; PF12767	Transcriptional regulator of RNA polII, SAGA, subunit; Transcriptional regulator of RNA polII, SAGA, subunit	IPR024738; IPR024738	Transcriptional coactivator Hfi1/Transcriptional adapter 1; Transcriptional coactivator Hfi1/Transcriptional adapter 1
hsd_id_Theobroma_cacao_2022	XP_007042615.2; XP_017981805.1	684; 615	Pfam	PF04484; PF04484	QWRF family; QWRF family	IPR007573; IPR007573	QWRF family; QWRF family
hsd_id_Theobroma_cacao_2023	XP_007042622.2; XP_017985428.1; XP_017983455.1	624; 622; 615	Pfam	PF00651, PF03000; PF00651, PF03000; PF00651, PF03000	BTB/POZ domain, NPH3 family; BTB/POZ domain, NPH3 family; BTB/POZ domain, NPH3 family	IPR000210, IPR027356; IPR000210, IPR027356; IPR000210, IPR027356	BTB/POZ domain, NPH3 domain; BTB/POZ domain, NPH3 domain; BTB/POZ domain, NPH3 domain
hsd_id_Theobroma_cacao_2024	XP_007042663.1; XP_017976475.1	300; 293	Pfam	PF00249, PF00538; PF00538, PF00249	Myb-like DNA-binding domain, linker histone H1 and H5 family; linker histone H1 and H5 family, Myb-like DNA-binding domain	IPR017930, IPR005818; IPR005818, IPR017930	Myb domain, Linker histone H1/H5, domain H15; Linker histone H1/H5, domain H15, Myb domain
hsd_id_Theobroma_cacao_2025	XP_007042677.2; XP_007043459.2; XP_007043458.2; XP_007043451.2	463; 465; 467; 466	Pfam	PF02458; PF02458; PF02458; PF02458	Transferase family; Transferase family; Transferase family; Transferase family	IPR003480; IPR003480; IPR003480; IPR003480	Transferase; Transferase; Transferase; Transferase
hsd_id_Theobroma_cacao_2026	XP_007042729.2; XP_017978543.1	437; 435	Pfam	PF03345; PF03345	Oligosaccharyltransferase 48 kDa subunit beta; Oligosaccharyltransferase 48 kDa subunit beta	IPR005013; IPR005013	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48kDa subunit; Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48kDa subunit
hsd_id_Theobroma_cacao_2027	XP_007042739.2; XP_017985232.1	189; 194	Pfam	PF03134; PF03134	TB2/DP1, HVA22 family; TB2/DP1, HVA22 family	IPR004345; IPR004345	TB2/DP1/HVA22-related protein; TB2/DP1/HVA22-related protein
hsd_id_Theobroma_cacao_2028	XP_007042763.2; XP_017981860.1	345; 330	Pfam	PF00300; PF00300	Histidine phosphatase superfamily (branch 1); Histidine phosphatase superfamily (branch 1)	IPR013078; IPR013078	Histidine phosphatase superfamily, clade-1; Histidine phosphatase superfamily, clade-1
hsd_id_Theobroma_cacao_2029	XP_007042796.2; XP_017970094.1	708; 715	Pfam	PF00069, PF00139; PF00139, PF00069	Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain	IPR000719, IPR001220; IPR001220, IPR000719	Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain
hsd_id_Theobroma_cacao_2030	XP_007042810.2; XP_007042815.2; XP_007047744.2	398; 398; 430	Pfam	PF03016; PF03016; PF03016	Exostosin family; Exostosin family; Exostosin family	IPR040911; IPR040911; IPR040911	Exostosin, GT47 domain; Exostosin, GT47 domain; Exostosin, GT47 domain
hsd_id_Theobroma_cacao_2031	XP_007042825.2; XP_007047780.2	245; 249	Pfam	PF00857; PF00857	Isochorismatase family; Isochorismatase family	IPR000868; IPR000868	Isochorismatase-like; Isochorismatase-like
hsd_id_Theobroma_cacao_2032	XP_007042842.2; XP_017985350.1	444; 444	Pfam	PF00996; PF00996	GDP dissociation inhibitor; GDP dissociation inhibitor	IPR018203; IPR018203	GDP dissociation inhibitor; GDP dissociation inhibitor
hsd_id_Theobroma_cacao_2033	XP_007042844.2; XP_017981093.1; XP_017975323.1	219; 227; 227	Pfam	PF01486, PF00319; PF01486, PF00319; PF01486, PF00319	K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain); K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain); K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain)	IPR002487, IPR002100; IPR002487, IPR002100; IPR002487, IPR002100	Transcription factor, K-box, Transcription factor, MADS-box; Transcription factor, K-box, Transcription factor, MADS-box; Transcription factor, K-box, Transcription factor, MADS-box
hsd_id_Theobroma_cacao_2034	XP_007042863.2; XP_007042868.1; XP_017970355.1	121; 124; 127	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2035	XP_007042927.2; XP_007052398.1	377; 377	Pfam	PF00656, PF06943; PF00656, PF06943	Caspase domain, LSD1 zinc finger; Caspase domain, LSD1 zinc finger	-, IPR005735; -, IPR005735	-, Zinc finger, LSD1-type; -, Zinc finger, LSD1-type
hsd_id_Theobroma_cacao_2036	XP_007042940.1; XP_007042942.2	375; 362	Pfam	PF00656; PF00656	Caspase domain; Caspase domain	-; -	-; -
hsd_id_Theobroma_cacao_2037	XP_007042950.2; XP_017970187.1; XP_017970226.1; XP_017981739.1; XP_007047909.1; XP_007047908.2; XP_007047910.1; XP_007047907.2	496; 488; 477; 487; 478; 484; 476; 480	Pfam	PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_2038	XP_007042960.2; XP_007047945.2	1064; 1085	Pfam	PF01833, PF00612, PF12796, PF03859; PF03859, PF01833, PF00612, PF12796	IPT/TIG domain, IQ calmodulin-binding motif, Ankyrin repeats (3 copies), CG-1 domain; CG-1 domain, IPT/TIG domain, IQ calmodulin-binding motif, Ankyrin repeats (3 copies)	IPR002909, IPR000048, IPR020683, IPR005559; IPR005559, IPR002909, IPR000048, IPR020683	IPT domain, IQ motif, EF-hand binding site, Ankyrin repeat-containing domain, CG-1 DNA-binding domain; CG-1 DNA-binding domain, IPT domain, IQ motif, EF-hand binding site, Ankyrin repeat-containing domain
hsd_id_Theobroma_cacao_2039	XP_007042962.2; XP_017972797.1	342; 327	Pfam	PF01786; PF01786	Alternative oxidase; Alternative oxidase	IPR002680; IPR002680	Alternative oxidase; Alternative oxidase
hsd_id_Theobroma_cacao_2040	XP_007042965.2; XP_007044564.2	858; 842	Pfam	PF02705; PF02705	K+ potassium transporter; K+ potassium transporter	IPR003855; IPR003855	Potassium transporter; Potassium transporter
hsd_id_Theobroma_cacao_2041	XP_007042992.2; XP_017981330.1	386; 386	Pfam	PF07970, PF13850; PF13850, PF07970	Endoplasmic reticulum vesicle transporter, Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC), Endoplasmic reticulum vesicle transporter	IPR012936, IPR039542; IPR039542, IPR012936	Endoplasmic reticulum vesicle transporter, C-terminal, Endoplasmic reticulum vesicle transporter, N-terminal; Endoplasmic reticulum vesicle transporter, N-terminal, Endoplasmic reticulum vesicle transporter, C-terminal
hsd_id_Theobroma_cacao_2042	XP_007043022.2; XP_017981729.1; XP_017971083.1	466; 443; 463	Pfam	PF00155; PF00155; PF00155	Aminotransferase class I and II; Aminotransferase class I and II; Aminotransferase class I and II	IPR004839; IPR004839; IPR004839	Aminotransferase, class I/classII; Aminotransferase, class I/classII; Aminotransferase, class I/classII
hsd_id_Theobroma_cacao_2043	XP_007043029.2; XP_017972786.1	644; 682	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2044	XP_007043034.1; XP_007048423.2; XP_017970346.1	189; 200; 140	Pfam	PF02365; PF02365; PF02365	No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein	IPR003441; IPR003441; IPR003441	NAC domain; NAC domain; NAC domain
hsd_id_Theobroma_cacao_2045	XP_007043050.2; XP_007043056.2; XP_017970640.1; XP_017970656.1; XP_017977969.1	293; 277; 302; 302; 378	Pfam	PF01255; PF01255; PF01255; PF01255; PF01255	Putative undecaprenyl diphosphate synthase; Putative undecaprenyl diphosphate synthase; Putative undecaprenyl diphosphate synthase; Putative undecaprenyl diphosphate synthase; Putative undecaprenyl diphosphate synthase	IPR001441; IPR001441; IPR001441; IPR001441; IPR001441	Decaprenyl diphosphate synthase-like; Decaprenyl diphosphate synthase-like; Decaprenyl diphosphate synthase-like; Decaprenyl diphosphate synthase-like; Decaprenyl diphosphate synthase-like
hsd_id_Theobroma_cacao_2046	XP_007043067.2; XP_007046482.2	432; 424	Pfam	PF01490; PF01490	Transmembrane amino acid transporter protein; Transmembrane amino acid transporter protein	IPR013057; IPR013057	Amino acid transporter, transmembrane domain; Amino acid transporter, transmembrane domain
hsd_id_Theobroma_cacao_2047	XP_007043079.2; XP_017981445.1	739; 739	Pfam	PF00083; PF00083	Sugar (and other) transporter; Sugar (and other) transporter	IPR005828; IPR005828	Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like
hsd_id_Theobroma_cacao_2048	XP_007043112.2; XP_017977214.1; XP_017973698.1; XP_007051035.1	1124; 1144; 1107; 1170	Pfam	PF03552, PF14570; PF03552, PF14570; PF03552, PF14570; PF03552, PF14570	Cellulose synthase, RING/Ubox like zinc-binding domain; Cellulose synthase, RING/Ubox like zinc-binding domain; Cellulose synthase, RING/Ubox like zinc-binding domain; Cellulose synthase, RING/Ubox like zinc-binding domain	IPR005150, -; IPR005150, -; IPR005150, -; IPR005150, -	Cellulose synthase, -; Cellulose synthase, -; Cellulose synthase, -; Cellulose synthase, -
hsd_id_Theobroma_cacao_2049	XP_007043120.1; XP_017970544.1	240; 239	Pfam	PF03107; PF03107	C1 domain; C1 domain	IPR004146; IPR004146	DC1; DC1
hsd_id_Theobroma_cacao_2050	XP_007043127.2; XP_017983114.1	1009; 1001	Pfam	PF13426, PF00069; PF00069, PF13426	PAS domain, Protein kinase domain; Protein kinase domain, PAS domain	IPR000014, IPR000719; IPR000719, IPR000014	PAS domain, Protein kinase domain; Protein kinase domain, PAS domain
hsd_id_Theobroma_cacao_2051	XP_007043171.2; XP_017980544.1	581; 580	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_2052	XP_007043176.2; XP_007043522.2	387; 376	Pfam	PF16881, PF04055; PF04055, PF16881	N-terminal domain of lipoyl synthase of Radical_SAM family, Radical SAM superfamily; Radical SAM superfamily, N-terminal domain of lipoyl synthase of Radical_SAM family	IPR031691, IPR007197; IPR007197, IPR031691	Lipoyl synthase, N-terminal, Radical SAM; Radical SAM, Lipoyl synthase, N-terminal
hsd_id_Theobroma_cacao_2053	XP_007043226.2; XP_007043227.1	122; 122	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2054	XP_007043287.2; XP_017971425.1	565; 522	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_2055	XP_007043322.2; XP_017970287.1; XP_017970628.1	405; 379; 379	Pfam	PF01040; PF01040; PF01040	UbiA prenyltransferase family; UbiA prenyltransferase family; UbiA prenyltransferase family	IPR000537; IPR000537; IPR000537	UbiA prenyltransferase family; UbiA prenyltransferase family; UbiA prenyltransferase family
hsd_id_Theobroma_cacao_2056	XP_007043327.2; XP_007043331.2	473; 484	Pfam	PF04646; PF04646	Protein of unknown function, DUF604; Protein of unknown function, DUF604	IPR006740; IPR006740	Protein of unknown function DUF604; Protein of unknown function DUF604
hsd_id_Theobroma_cacao_2057	XP_007043463.2; XP_017980520.1	488; 488	Pfam	PF00609, PF00781; PF00609, PF00781	Diacylglycerol kinase accessory domain, Diacylglycerol kinase catalytic domain; Diacylglycerol kinase accessory domain, Diacylglycerol kinase catalytic domain	IPR000756, IPR001206; IPR000756, IPR001206	Diacylglycerol kinase, accessory domain, Diacylglycerol kinase, catalytic domain; Diacylglycerol kinase, accessory domain, Diacylglycerol kinase, catalytic domain
hsd_id_Theobroma_cacao_2058	XP_007043535.1; XP_017979199.1; XP_017977222.1; XP_017976283.1	473; 516; 493; 450	Pfam	PF00481; PF00481; PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932; IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_2059	XP_007043543.1; XP_017970617.1	353; 365	Pfam	PF00891, PF08100; PF00891, PF08100	O-methyltransferase domain, Dimerisation domain; O-methyltransferase domain, Dimerisation domain	IPR001077, IPR012967; IPR001077, IPR012967	O-methyltransferase domain, Plant methyltransferase dimerisation; O-methyltransferase domain, Plant methyltransferase dimerisation
hsd_id_Theobroma_cacao_2060	XP_007043591.1; XP_017980163.1	160; 166	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2061	XP_007043620.1; XP_007030995.2; XP_007050868.2; XP_007035581.1; XP_017974106.1; XP_007017197.2; XP_017969945.1	126; 118; 116; 128; 124; 119; 132	Pfam	PF05498; PF05498; PF05498; PF05498; PF05498; PF05498; PF05498	Rapid ALkalinization Factor (RALF); Rapid ALkalinization Factor (RALF); Rapid ALkalinization Factor (RALF); Rapid ALkalinization Factor (RALF); Rapid ALkalinization Factor (RALF); Rapid ALkalinization Factor (RALF); Rapid ALkalinization Factor (RALF)	IPR008801; IPR008801; IPR008801; IPR008801; IPR008801; IPR008801; IPR008801	Rapid ALkalinization Factor; Rapid ALkalinization Factor; Rapid ALkalinization Factor; Rapid ALkalinization Factor; Rapid ALkalinization Factor; Rapid ALkalinization Factor; Rapid ALkalinization Factor
hsd_id_Theobroma_cacao_2062	XP_007043627.2; XP_017983391.1; XP_017969433.1; XP_017972143.1	380; 391; 390; 316	Pfam	PF00153; PF00153; PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein; Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108; IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_2063	XP_007043670.1; XP_017980013.1; XP_017978768.1; XP_007044641.1	154; 196; 157; 137	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_2064	XP_007043689.1; XP_007050056.1; XP_017978472.1; XP_017979741.1	73; 76; 81; 73	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_2065	XP_007043719.2; XP_017978954.1	452; 480	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2066	XP_007043804.2; XP_017975160.1	138; 135	Pfam	PF07207; PF07207	Light regulated protein Lir1; Light regulated protein Lir1	IPR009856; IPR009856	Light regulated Lir1; Light regulated Lir1
hsd_id_Theobroma_cacao_2067	XP_007043844.1; XP_017975135.1	280; 300	Pfam	PF02893; PF02893	GRAM domain; GRAM domain	IPR004182; IPR004182	GRAM domain; GRAM domain
hsd_id_Theobroma_cacao_2068	XP_007043862.2; XP_017973219.1	367; 360	Pfam	PF02779, PF02780; PF02779, PF02780	Transketolase, pyrimidine binding domain, Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain, Transketolase, C-terminal domain	IPR005475, IPR033248; IPR005475, IPR033248	Transketolase-like, pyrimidine-binding domain, Transketolase, C-terminal domain; Transketolase-like, pyrimidine-binding domain, Transketolase, C-terminal domain
hsd_id_Theobroma_cacao_2069	XP_007043915.2; XP_017984428.1; XP_017974006.1; XP_007026357.1	241; 149; 335; 267	Pfam	PF00403; PF00403; PF00403; PF00403	Heavy-metal-associated domain; Heavy-metal-associated domain; Heavy-metal-associated domain; Heavy-metal-associated domain	IPR006121; IPR006121; IPR006121; IPR006121	Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA
hsd_id_Theobroma_cacao_2070	XP_007043968.2; XP_017971497.1	1029; 1003	Pfam	PF02518, PF00072, PF00512, PF03924; PF00512, PF02518, PF00072, PF03924	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, His Kinase A (phospho-acceptor) domain, CHASE domain; His Kinase A (phospho-acceptor) domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Response regulator receiver domain, CHASE domain	IPR003594, IPR001789, IPR003661, IPR006189; IPR003661, IPR003594, IPR001789, IPR006189	Histidine kinase/HSP90-like ATPase, Signal transduction response regulator, receiver domain, Signal transduction histidine kinase, dimerisation/phosphoacceptor domain, CHASE domain; Signal transduction histidine kinase, dimerisation/phosphoacceptor domain, Histidine kinase/HSP90-like ATPase, Signal transduction response regulator, receiver domain, CHASE domain
hsd_id_Theobroma_cacao_2071	XP_007043980.1; XP_017978105.1	68; 153	Pfam	PF06624; PF06624	Ribosome associated membrane protein RAMP4; Ribosome associated membrane protein RAMP4	IPR010580; IPR010580	Stress-associated endoplasmic reticulum protein; Stress-associated endoplasmic reticulum protein
hsd_id_Theobroma_cacao_2072	XP_007044009.2; XP_017973536.1	365; 360	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2073	XP_007044017.1; XP_017982009.1	271; 263	Pfam	PF00504; PF00504	Chlorophyll A-B binding protein; Chlorophyll A-B binding protein	IPR022796; IPR022796	Chlorophyll A-B binding protein; Chlorophyll A-B binding protein
hsd_id_Theobroma_cacao_2074	XP_007044029.1; XP_017978671.1	449; 479	Pfam	PF03031; PF03031	NLI interacting factor-like phosphatase; NLI interacting factor-like phosphatase	IPR004274; IPR004274	FCP1 homology domain; FCP1 homology domain
hsd_id_Theobroma_cacao_2075	XP_007044084.1; XP_007048584.2	179; 172	Pfam	PF06364; PF06364	Protein of unknown function (DUF1068); Protein of unknown function (DUF1068)	IPR010471; IPR010471	Protein of unknown function DUF1068; Protein of unknown function DUF1068
hsd_id_Theobroma_cacao_2076	XP_007044118.2; XP_017972486.1	395; 389	Pfam	PF01643; PF01643	Acyl-ACP thioesterase; Acyl-ACP thioesterase	IPR002864; IPR002864	Acyl-ACP thioesterase; Acyl-ACP thioesterase
hsd_id_Theobroma_cacao_2077	XP_007044230.2; XP_017974372.1	716; 708	Pfam	PF00560, PF13855, PF08263, PF00069; PF00560, PF00069, PF08263, PF13855	Leucine Rich Repeat, Leucine rich repeat, Leucine rich repeat N-terminal domain, Protein kinase domain; Leucine Rich Repeat, Protein kinase domain, Leucine rich repeat N-terminal domain, Leucine rich repeat	IPR001611, IPR001611, IPR013210, IPR000719; IPR001611, IPR000719, IPR013210, IPR001611	Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Protein kinase domain; Leucine-rich repeat, Protein kinase domain, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat
hsd_id_Theobroma_cacao_2078	XP_007044248.2; XP_007051022.2	365; 308	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_2079	XP_007044253.2; XP_017977707.1; XP_017981229.1	428; 460; 428	Pfam	PF00481; PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_2080	XP_007044274.1; XP_017977122.1	154; 135	Pfam	PF00072; PF00072	Response regulator receiver domain; Response regulator receiver domain	IPR001789; IPR001789	Signal transduction response regulator, receiver domain; Signal transduction response regulator, receiver domain
hsd_id_Theobroma_cacao_2081	XP_007044293.2; XP_007044294.1	158; 172	Pfam	PF00582; PF00582	Universal stress protein family; Universal stress protein family	IPR006016; IPR006016	UspA; UspA
hsd_id_Theobroma_cacao_2082	XP_007044467.2; XP_017977641.1; XP_007034995.2; XP_017982724.1	517; 487; 400; 458	Pfam	PF06886; PF06886; PF06886; PF06886	Targeting protein for Xklp2 (TPX2) domain; Targeting protein for Xklp2 (TPX2) domain; Targeting protein for Xklp2 (TPX2) domain; Targeting protein for Xklp2 (TPX2) domain	IPR027329; IPR027329; IPR027329; IPR027329	TPX2, C-terminal; TPX2, C-terminal; TPX2, C-terminal; TPX2, C-terminal
hsd_id_Theobroma_cacao_2083	XP_007044486.2; XP_007044487.2; XP_007044808.2; XP_007045415.2; XP_007045416.2; XP_007045414.2	328; 328; 329; 325; 318; 317	Pfam	PF00248; PF00248; PF00248; PF00248; PF00248; PF00248	Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family; Aldo/keto reductase family	IPR023210; IPR023210; IPR023210; IPR023210; IPR023210; IPR023210	NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain; NADP-dependent oxidoreductase domain
hsd_id_Theobroma_cacao_2084	XP_007044496.1; XP_007044279.2	250; 238	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2085	XP_007044525.2; XP_017972024.1	225; 170	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2086	XP_007044546.2; XP_017972156.1	684; 683	Pfam	PF04564, PF00514; PF00514, PF04564	U-box domain, Armadillo/beta-catenin-like repeat; Armadillo/beta-catenin-like repeat, U-box domain	IPR003613, IPR000225; IPR000225, IPR003613	U box domain, Armadillo; Armadillo, U box domain
hsd_id_Theobroma_cacao_2087	XP_007044551.2; XP_017973617.1; XP_017975829.1; XP_017983163.1	538; 540; 537; 504	Pfam	PF00171; PF00171; PF00171; PF00171	Aldehyde dehydrogenase family; Aldehyde dehydrogenase family; Aldehyde dehydrogenase family; Aldehyde dehydrogenase family	IPR015590; IPR015590; IPR015590; IPR015590	Aldehyde dehydrogenase domain; Aldehyde dehydrogenase domain; Aldehyde dehydrogenase domain; Aldehyde dehydrogenase domain
hsd_id_Theobroma_cacao_2088	XP_007044558.1; XP_017983652.1	177; 181	Pfam	PF00098, PF00076; PF00076, PF00098	Zinc knuckle, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Zinc knuckle	IPR001878, IPR000504; IPR000504, IPR001878	Zinc finger, CCHC-type, RNA recognition motif domain; RNA recognition motif domain, Zinc finger, CCHC-type
hsd_id_Theobroma_cacao_2089	XP_007044754.2; XP_007048857.2	404; 331	Pfam	PF13793, PF00156; PF00156, PF13793	N-terminal domain of ribose phosphate pyrophosphokinase, Phosphoribosyl transferase domain; Phosphoribosyl transferase domain, N-terminal domain of ribose phosphate pyrophosphokinase	IPR029099, IPR000836; IPR000836, IPR029099	Ribose-phosphate pyrophosphokinase, N-terminal domain, Phosphoribosyltransferase domain; Phosphoribosyltransferase domain, Ribose-phosphate pyrophosphokinase, N-terminal domain
hsd_id_Theobroma_cacao_2090	XP_007044776.2; XP_017973925.1	616; 612	Pfam	PF00514; PF00514	Armadillo/beta-catenin-like repeat; Armadillo/beta-catenin-like repeat	IPR000225; IPR000225	Armadillo; Armadillo
hsd_id_Theobroma_cacao_2091	XP_007044792.2; XP_017975759.1	700; 672	Pfam	PF00664, PF00005; PF00005, PF00664	ABC transporter transmembrane region, ABC transporter; ABC transporter, ABC transporter transmembrane region	IPR011527, IPR003439; IPR003439, IPR011527	ABC transporter type 1, transmembrane domain, ABC transporter-like, ATP-binding domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain
hsd_id_Theobroma_cacao_2092	XP_007044801.2; XP_017972233.1	186; 189	Pfam	PF00564; PF00564	PB1 domain; PB1 domain	IPR000270; IPR000270	PB1 domain; PB1 domain
hsd_id_Theobroma_cacao_2093	XP_007044846.2; XP_017984932.1	862; 849	Pfam	PF00782; PF00782	Dual specificity phosphatase, catalytic domain; Dual specificity phosphatase, catalytic domain	IPR000340; IPR000340	Dual specificity phosphatase, catalytic domain; Dual specificity phosphatase, catalytic domain
hsd_id_Theobroma_cacao_2094	XP_007044877.2; XP_017974335.1	705; 705	Pfam	PF14576, PF14577; PF14576, PF14577	Sieve element occlusion N-terminus, Sieve element occlusion C-terminus; Sieve element occlusion N-terminus, Sieve element occlusion C-terminus	IPR027942, IPR027944; IPR027942, IPR027944	Sieve element occlusion, N-terminal, Sieve element occlusion, C-terminal; Sieve element occlusion, N-terminal, Sieve element occlusion, C-terminal
hsd_id_Theobroma_cacao_2095	XP_007044906.2; XP_017971401.1	652; 700	Pfam	PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_2096	XP_007044911.1; XP_017970587.1	106; 105	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2097	XP_007044921.2; XP_017983475.1	535; 450	Pfam	PF02096; PF02096	60Kd inner membrane protein; 60Kd inner membrane protein	IPR001708; IPR001708	Membrane  insertase YidC/ALB3/OXA1/COX18; Membrane  insertase YidC/ALB3/OXA1/COX18
hsd_id_Theobroma_cacao_2098	XP_007044931.2; XP_017970151.1	320; 307	Pfam	PF00106; PF00106	short chain dehydrogenase; short chain dehydrogenase	IPR002347; IPR002347	Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR
hsd_id_Theobroma_cacao_2099	XP_007044953.2; XP_017971861.1	646; 686	Pfam	PF06886; PF06886	Targeting protein for Xklp2 (TPX2) domain; Targeting protein for Xklp2 (TPX2) domain	IPR027329; IPR027329	TPX2, C-terminal; TPX2, C-terminal
hsd_id_Theobroma_cacao_2100	XP_007044963.2; XP_007044964.2; XP_017970631.1; XP_017970615.1	505; 432; 431; 432	Pfam	PF02458; PF02458; PF02458; PF02458	Transferase family; Transferase family; Transferase family; Transferase family	IPR003480; IPR003480; IPR003480; IPR003480	Transferase; Transferase; Transferase; Transferase
hsd_id_Theobroma_cacao_2101	XP_007045040.2; XP_017970476.1; XP_007046846.1; XP_007046840.2; XP_017970079.1; XP_017970073.1; XP_007046842.2	494; 565; 524; 508; 515; 610; 535	Pfam	PF14363, PF00004; PF14363, PF00004; PF14363, PF00004; PF00004, PF14363; PF14363, PF00004; PF00004, PF14363; PF14363, PF00004	Domain associated at C-terminal with AAA, ATPase family associated with various cellular activities (AAA); Domain associated at C-terminal with AAA, ATPase family associated with various cellular activities (AAA); Domain associated at C-terminal with AAA, ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA), Domain associated at C-terminal with AAA; Domain associated at C-terminal with AAA, ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA), Domain associated at C-terminal with AAA; Domain associated at C-terminal with AAA, ATPase family associated with various cellular activities (AAA)	IPR025753, IPR003959; IPR025753, IPR003959; IPR025753, IPR003959; IPR003959, IPR025753; IPR025753, IPR003959; IPR003959, IPR025753; IPR025753, IPR003959	AAA-type ATPase, N-terminal domain, ATPase, AAA-type, core; AAA-type ATPase, N-terminal domain, ATPase, AAA-type, core; AAA-type ATPase, N-terminal domain, ATPase, AAA-type, core; ATPase, AAA-type, core, AAA-type ATPase, N-terminal domain; AAA-type ATPase, N-terminal domain, ATPase, AAA-type, core; ATPase, AAA-type, core, AAA-type ATPase, N-terminal domain; AAA-type ATPase, N-terminal domain, ATPase, AAA-type, core
hsd_id_Theobroma_cacao_2102	XP_007045106.2; XP_007020232.2	1745; 1692	Pfam	PF01504, PF00118; PF01504, PF00118	Phosphatidylinositol-4-phosphate 5-Kinase, TCP-1/cpn60 chaperonin family; Phosphatidylinositol-4-phosphate 5-Kinase, TCP-1/cpn60 chaperonin family	IPR002498, IPR002423; IPR002498, IPR002423	Phosphatidylinositol-4-phosphate 5-kinase, core, Chaperonin Cpn60/TCP-1 family; Phosphatidylinositol-4-phosphate 5-kinase, core, Chaperonin Cpn60/TCP-1 family
hsd_id_Theobroma_cacao_2103	XP_007045170.1; XP_007045177.1	150; 151	Pfam	PF00407; PF00407	Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family	IPR000916; IPR000916	Bet v I/Major latex protein; Bet v I/Major latex protein
hsd_id_Theobroma_cacao_2104	XP_007045183.2; XP_007045185.2; XP_017971587.1; XP_017971588.1	156; 156; 155; 132	Pfam	PF00407; PF00407; PF00407; PF00407	Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family; Pathogenesis-related protein Bet v 1 family	IPR000916; IPR000916; IPR000916; IPR000916	Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein; Bet v I/Major latex protein
hsd_id_Theobroma_cacao_2105	XP_007045207.2; XP_017971009.1; XP_017971010.1	450; 458; 389	Pfam	PF00450; PF00450; PF00450	Serine carboxypeptidase; Serine carboxypeptidase; Serine carboxypeptidase	IPR001563; IPR001563; IPR001563	Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase
hsd_id_Theobroma_cacao_2106	XP_007045214.2; XP_017972920.1	582; 639	Pfam	PF02878, PF00408, PF02880, PF02879; PF02879, PF00408, PF02880, PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I, Phosphoglucomutase/phosphomannomutase, C-terminal domain, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II, Phosphoglucomutase/phosphomannomutase, C-terminal domain, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III, Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I	IPR005844, IPR005843, IPR005846, IPR005845; IPR005845, IPR005843, IPR005846, IPR005844	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I, Alpha-D-phosphohexomutase, C-terminal, Alpha-D-phosphohexomutase, alpha/beta/alpha domain III, Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II, Alpha-D-phosphohexomutase, C-terminal, Alpha-D-phosphohexomutase, alpha/beta/alpha domain III, Alpha-D-phosphohexomutase, alpha/beta/alpha domain I
hsd_id_Theobroma_cacao_2107	XP_007045357.2; XP_007052064.2	454; 431	Pfam	PF14555, PF00789, PF13899; PF13899, PF00789, PF14555	UBA-like domain, UBX domain, Thioredoxin-like; Thioredoxin-like, UBX domain, UBA-like domain	-, IPR001012, -; -, IPR001012, -	-, UBX domain, -; -, UBX domain, -
hsd_id_Theobroma_cacao_2108	XP_007045370.2; XP_017971628.1	594; 589	Pfam	PF12171; PF12171	Zinc-finger double-stranded RNA-binding; Zinc-finger double-stranded RNA-binding	IPR022755; IPR022755	Zinc finger, double-stranded RNA binding; Zinc finger, double-stranded RNA binding
hsd_id_Theobroma_cacao_2109	XP_007045397.2; XP_017973417.1	498; 499	Pfam	PF00282; PF00282	Pyridoxal-dependent decarboxylase conserved domain; Pyridoxal-dependent decarboxylase conserved domain	IPR002129; IPR002129	Pyridoxal phosphate-dependent decarboxylase; Pyridoxal phosphate-dependent decarboxylase
hsd_id_Theobroma_cacao_2110	XP_007045473.2; XP_017973152.1	336; 352	Pfam	PF06955, PF00722; PF06955, PF00722	Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16	IPR010713, IPR000757; IPR010713, IPR000757	Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16
hsd_id_Theobroma_cacao_2111	XP_007045513.1; XP_017978932.1	166; 211	Pfam	PF00238; PF00238	Ribosomal protein L14p/L23e; Ribosomal protein L14p/L23e	IPR000218; IPR000218	Ribosomal protein L14P; Ribosomal protein L14P
hsd_id_Theobroma_cacao_2112	XP_007045530.1; XP_017970596.1	248; 277	Pfam	PF01988; PF01988	VIT family; VIT family	IPR008217; IPR008217	Ccc1 family; Ccc1 family
hsd_id_Theobroma_cacao_2113	XP_007045555.2; XP_017970690.1	1125; 1109	Pfam	PF05183; PF05183	RNA dependent RNA polymerase; RNA dependent RNA polymerase	IPR007855; IPR007855	RNA-dependent RNA polymerase, eukaryotic-type; RNA-dependent RNA polymerase, eukaryotic-type
hsd_id_Theobroma_cacao_2114	XP_007045599.2; XP_017976121.1; XP_007045601.2	326; 323; 328	Pfam	PF00141; PF00141; PF00141	Peroxidase; Peroxidase; Peroxidase	IPR002016; IPR002016; IPR002016	Haem peroxidase; Haem peroxidase; Haem peroxidase
hsd_id_Theobroma_cacao_2115	XP_007045618.2; XP_017970031.1	167; 167	Pfam	PF05241; PF05241	EXPERA (EXPanded EBP superfamily); EXPERA (EXPanded EBP superfamily)	-; -	-; -
hsd_id_Theobroma_cacao_2116	XP_007045619.2; XP_017979533.1	287; 281	Pfam	PF00071; PF00071	Ras family; Ras family	IPR001806; IPR001806	Small GTPase; Small GTPase
hsd_id_Theobroma_cacao_2117	XP_007045620.2; XP_017981434.1; XP_017984123.1; XP_017981850.1; XP_017970866.1; XP_007045627.2	952; 933; 932; 939; 944; 922	Pfam	PF01094, PF00060, PF00497; PF01094, PF00060, PF00497; PF01094, PF00497, PF00060; PF00060, PF00497, PF01094; PF00060, PF01094, PF00497; PF01094, PF00060, PF00497	Receptor family ligand binding region, Ligand-gated ion channel, Bacterial extracellular solute-binding proteins, family 3; Receptor family ligand binding region, Ligand-gated ion channel, Bacterial extracellular solute-binding proteins, family 3; Receptor family ligand binding region, Bacterial extracellular solute-binding proteins, family 3, Ligand-gated ion channel; Ligand-gated ion channel, Bacterial extracellular solute-binding proteins, family 3, Receptor family ligand binding region; Ligand-gated ion channel, Receptor family ligand binding region, Bacterial extracellular solute-binding proteins, family 3; Receptor family ligand binding region, Ligand-gated ion channel, Bacterial extracellular solute-binding proteins, family 3	IPR001828, IPR001320, IPR001638; IPR001828, IPR001320, IPR001638; IPR001828, IPR001638, IPR001320; IPR001320, IPR001638, IPR001828; IPR001320, IPR001828, IPR001638; IPR001828, IPR001320, IPR001638	Receptor, ligand binding region, Ionotropic glutamate receptor, Solute-binding protein  family 3/N-terminal domain of MltF; Receptor, ligand binding region, Ionotropic glutamate receptor, Solute-binding protein  family 3/N-terminal domain of MltF; Receptor, ligand binding region, Solute-binding protein  family 3/N-terminal domain of MltF, Ionotropic glutamate receptor; Ionotropic glutamate receptor, Solute-binding protein  family 3/N-terminal domain of MltF, Receptor, ligand binding region; Ionotropic glutamate receptor, Receptor, ligand binding region, Solute-binding protein  family 3/N-terminal domain of MltF; Receptor, ligand binding region, Ionotropic glutamate receptor, Solute-binding protein  family 3/N-terminal domain of MltF
hsd_id_Theobroma_cacao_2118	XP_007045643.2; XP_007020806.1	118; 126	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2119	XP_007045658.1; XP_017979848.1; XP_017969513.1	145; 139; 151	Pfam	PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2120	XP_007045683.2; XP_007037710.1	160; 161	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2121	XP_007045688.1; XP_017969963.1	248; 268	Pfam	PF00445; PF00445	Ribonuclease T2 family; Ribonuclease T2 family	IPR001568; IPR001568	Ribonuclease T2-like; Ribonuclease T2-like
hsd_id_Theobroma_cacao_2122	XP_007045725.2; XP_007045733.2	471; 481	Pfam	PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_2123	XP_007045726.2; XP_007049300.2	789; 796	Pfam	PF00183, PF02518; PF02518, PF00183	Hsp90 protein, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Hsp90 protein	IPR001404, IPR003594; IPR003594, IPR001404	Heat shock protein Hsp90 family, Histidine kinase/HSP90-like ATPase; Histidine kinase/HSP90-like ATPase, Heat shock protein Hsp90 family
hsd_id_Theobroma_cacao_2124	XP_007045739.2; XP_017975865.1	330; 334	Pfam	PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_2125	XP_007045775.1; XP_007045776.2; XP_017974381.1; XP_017970582.1; XP_017971119.1; XP_017971118.1; XP_017971120.1; XP_007045779.2	519; 515; 519; 516; 524; 524; 524; 517	Pfam	PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_2126	XP_007045781.2; XP_007045784.1	832; 822	Pfam	PF12819, PF07714; PF07714, PF12819	Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain	IPR024788, IPR001245; IPR001245, IPR024788	Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain
hsd_id_Theobroma_cacao_2127	XP_007045819.2; XP_017970890.1	585; 601	Pfam	PF00854; PF00854	POT family; POT family	IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_2128	XP_007045839.2; XP_017975824.1	432; 384	Pfam	PF12697; PF12697	Alpha/beta hydrolase family; Alpha/beta hydrolase family	IPR000073; IPR000073	Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1
hsd_id_Theobroma_cacao_2129	XP_007045850.2; XP_017972457.1	383; 334	Pfam	PF16135, PF07897, PF16136; PF16136, PF07897, PF16135	Tify domain binding domain, Ethylene-responsive binding factor-associated repression, Putative nuclear localisation signal; Putative nuclear localisation signal, Ethylene-responsive binding factor-associated repression, Tify domain binding domain	IPR032308, IPR012463, IPR032310; IPR032310, IPR012463, IPR032308	Jas TPL-binding domain, Ethylene-responsive binding factor-associated repression, Putative nuclear localisation signal; Putative nuclear localisation signal, Ethylene-responsive binding factor-associated repression, Jas TPL-binding domain
hsd_id_Theobroma_cacao_2130	XP_007045871.2; XP_017971894.1	406; 461	Pfam	PF07168; PF07168	Ureide permease; Ureide permease	IPR009834; IPR009834	Ureide permease; Ureide permease
hsd_id_Theobroma_cacao_2131	XP_007045882.2; XP_017974204.1	339; 342	Pfam	PF12697; PF12697	Alpha/beta hydrolase family; Alpha/beta hydrolase family	IPR000073; IPR000073	Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1
hsd_id_Theobroma_cacao_2132	XP_007045932.1; XP_017970556.1	144; 130	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2133	XP_007045936.2; XP_007045938.2; XP_017970548.1	465; 465; 474	Pfam	PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_2134	XP_007045992.2; XP_017979011.1	396; 393	Pfam	PF00847; PF00847	AP2 domain; AP2 domain	IPR001471; IPR001471	AP2/ERF domain; AP2/ERF domain
hsd_id_Theobroma_cacao_2135	XP_007045993.1; XP_017975790.1	715; 714	Pfam	PF14703, PF13967, PF02714; PF13967, PF02714, PF14703	Cytosolic domain of 10TM putative phosphate transporter, Late exocytosis, associated with Golgi transport, Calcium-dependent channel, 7TM region, putative phosphate; Late exocytosis, associated with Golgi transport, Calcium-dependent channel, 7TM region, putative phosphate, Cytosolic domain of 10TM putative phosphate transporter	IPR027815, IPR032880, IPR003864; IPR032880, IPR003864, IPR027815	10TM putative phosphate transporter, cytosolic domain, Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domain, Calcium-dependent channel, 7TM region, putative phosphate; Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domain, Calcium-dependent channel, 7TM region, putative phosphate, 10TM putative phosphate transporter, cytosolic domain
hsd_id_Theobroma_cacao_2136	XP_007045997.2; XP_017975577.1	1468; 1456	Pfam	PF12783, PF01369; PF01369, PF12783	Guanine nucleotide exchange factor in Golgi transport N-terminal, Sec7 domain; Sec7 domain, Guanine nucleotide exchange factor in Golgi transport N-terminal	IPR032691, IPR000904; IPR000904, IPR032691	Guanine nucleotide exchange factor, N-terminal, Sec7 domain; Sec7 domain, Guanine nucleotide exchange factor, N-terminal
hsd_id_Theobroma_cacao_2137	XP_007046019.2; XP_017973774.1	571; 584	Pfam	PF03254; PF03254	Xyloglucan fucosyltransferase; Xyloglucan fucosyltransferase	IPR004938; IPR004938	Xyloglucan fucosyltransferase; Xyloglucan fucosyltransferase
hsd_id_Theobroma_cacao_2138	XP_007046080.2; XP_007046081.2	228; 227	Pfam	PF00445; PF00445	Ribonuclease T2 family; Ribonuclease T2 family	IPR001568; IPR001568	Ribonuclease T2-like; Ribonuclease T2-like
hsd_id_Theobroma_cacao_2139	XP_007046106.1; XP_017974261.1; XP_017972554.1	120; 120; 114	Pfam	PF01199; PF01199; PF01199	Ribosomal protein L34e; Ribosomal protein L34e; Ribosomal protein L34e	IPR008195; IPR008195; IPR008195	Ribosomal protein L34Ae; Ribosomal protein L34Ae; Ribosomal protein L34Ae
hsd_id_Theobroma_cacao_2140	XP_007046208.2; XP_017971407.1	488; 482	Pfam	PF00450; PF00450	Serine carboxypeptidase; Serine carboxypeptidase	IPR001563; IPR001563	Peptidase S10, serine carboxypeptidase; Peptidase S10, serine carboxypeptidase
hsd_id_Theobroma_cacao_2141	XP_007046296.1; XP_007008903.2; XP_007040692.2	388; 382; 376	Pfam	PF00249; PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930; IPR017930	Myb domain; Myb domain; Myb domain
hsd_id_Theobroma_cacao_2142	XP_007046301.2; XP_007047220.1	369; 353	Pfam	PF00557; PF00557	Metallopeptidase family M24; Metallopeptidase family M24	IPR000994; IPR000994	Peptidase M24; Peptidase M24
hsd_id_Theobroma_cacao_2143	XP_007046357.2; XP_017974331.1	823; 774	Pfam	PF03105, PF03124; PF03105, PF03124	SPX domain, EXS family; SPX domain, EXS family	IPR004331, IPR004342; IPR004331, IPR004342	SPX domain, EXS, C-terminal; SPX domain, EXS, C-terminal
hsd_id_Theobroma_cacao_2144	XP_007046374.2; XP_017983216.1	486; 488	Pfam	PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930	Myb domain; Myb domain
hsd_id_Theobroma_cacao_2145	XP_007046522.2; XP_017971363.1	559; 559	Pfam	PF00627, PF00240; PF00240, PF00627	UBA/TS-N domain, Ubiquitin family; Ubiquitin family, UBA/TS-N domain	IPR015940, IPR000626; IPR000626, IPR015940	Ubiquitin-associated domain, Ubiquitin-like domain; Ubiquitin-like domain, Ubiquitin-associated domain
hsd_id_Theobroma_cacao_2146	XP_007046538.1; XP_017971875.1	367; 365	Pfam	PF00180; PF00180	Isocitrate/isopropylmalate dehydrogenase; Isocitrate/isopropylmalate dehydrogenase	IPR024084; IPR024084	Isopropylmalate dehydrogenase-like domain; Isopropylmalate dehydrogenase-like domain
hsd_id_Theobroma_cacao_2147	XP_007046542.2; XP_017982121.1	380; 386	Pfam	PF03088; PF03088	Strictosidine synthase; Strictosidine synthase	IPR018119; IPR018119	Strictosidine synthase, conserved region; Strictosidine synthase, conserved region
hsd_id_Theobroma_cacao_2148	XP_007046549.2; XP_007051309.2	263; 274	Pfam	PF00182; PF00182	Chitinase class I; Chitinase class I	IPR000726; IPR000726	Glycoside hydrolase, family 19, catalytic; Glycoside hydrolase, family 19, catalytic
hsd_id_Theobroma_cacao_2149	XP_007046553.2; XP_017972109.1	306; 301	Pfam	PF03087; PF03087	Arabidopsis protein of unknown function; Arabidopsis protein of unknown function	IPR004320; IPR004320	Protein of unknown function DUF241, plant; Protein of unknown function DUF241, plant
hsd_id_Theobroma_cacao_2150	XP_007046597.2; XP_017980157.1	900; 916	Pfam	PF00694, PF00330; PF00694, PF00330	Aconitase C-terminal domain, Aconitase family (aconitate hydratase); Aconitase C-terminal domain, Aconitase family (aconitate hydratase)	IPR000573, IPR001030; IPR000573, IPR001030	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain, Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain; Aconitase A/isopropylmalate dehydratase small subunit, swivel domain, Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
hsd_id_Theobroma_cacao_2151	XP_007046606.2; XP_017969625.1	518; 515	Pfam	PF14541, PF14543; PF14543, PF14541	Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal	IPR032799, IPR032861; IPR032861, IPR032799	Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal
hsd_id_Theobroma_cacao_2152	XP_007046631.2; XP_017980920.1	390; 365	Pfam	PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_2153	XP_007046634.2; XP_017981741.1	790; 790	Pfam	PF03635; PF03635	Vacuolar protein sorting-associated protein 35; Vacuolar protein sorting-associated protein 35	IPR005378; IPR005378	Vacuolar protein sorting-associated protein 35; Vacuolar protein sorting-associated protein 35
hsd_id_Theobroma_cacao_2154	XP_007046657.2; XP_017971066.1	467; 444	Pfam	PF06911; PF06911	Senescence-associated protein; Senescence-associated protein	IPR009686; IPR009686	Senescence/spartin-associated, C-terminal; Senescence/spartin-associated, C-terminal
hsd_id_Theobroma_cacao_2155	XP_007046720.1; XP_017970088.1	273; 242	Pfam	PF03366; PF03366	YEATS family; YEATS family	IPR005033; IPR005033	YEATS; YEATS
hsd_id_Theobroma_cacao_2156	XP_007046733.1; XP_007030537.1; XP_007051042.2; XP_007050394.2	195; 212; 193; 284	Pfam	PF00538; PF00538; PF00538; PF00538	linker histone H1 and H5 family; linker histone H1 and H5 family; linker histone H1 and H5 family; linker histone H1 and H5 family	IPR005818; IPR005818; IPR005818; IPR005818	Linker histone H1/H5, domain H15; Linker histone H1/H5, domain H15; Linker histone H1/H5, domain H15; Linker histone H1/H5, domain H15
hsd_id_Theobroma_cacao_2157	XP_007046742.2; XP_017970740.1; XP_017981163.1; XP_017974088.1; XP_017981956.1	982; 965; 1062; 964; 946	Pfam	PF11995, PF00225; PF11995, PF00225; PF00225, PF11995; PF11995, PF00225; PF11995, PF00225	Domain of unknown function (DUF3490), Kinesin motor domain; Domain of unknown function (DUF3490), Kinesin motor domain; Kinesin motor domain, Domain of unknown function (DUF3490); Domain of unknown function (DUF3490), Kinesin motor domain; Domain of unknown function (DUF3490), Kinesin motor domain	IPR021881, IPR001752; IPR021881, IPR001752; IPR001752, IPR021881; IPR021881, IPR001752; IPR021881, IPR001752	NPK1-activating kinesin-like protein, C-terminal, Kinesin motor domain; NPK1-activating kinesin-like protein, C-terminal, Kinesin motor domain; Kinesin motor domain, NPK1-activating kinesin-like protein, C-terminal; NPK1-activating kinesin-like protein, C-terminal, Kinesin motor domain; NPK1-activating kinesin-like protein, C-terminal, Kinesin motor domain
hsd_id_Theobroma_cacao_2158	XP_007046745.2; XP_017970899.1	185; 213	Pfam	PF00643; PF00643	B-box zinc finger; B-box zinc finger	IPR000315; IPR000315	B-box-type zinc finger; B-box-type zinc finger
hsd_id_Theobroma_cacao_2159	XP_007046769.2; XP_017981677.1	422; 426	Pfam	PF00560, PF13855; PF13855, PF00560	Leucine Rich Repeat, Leucine rich repeat; Leucine rich repeat, Leucine Rich Repeat	IPR001611, IPR001611; IPR001611, IPR001611	Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat
hsd_id_Theobroma_cacao_2160	XP_007046778.1; XP_017983746.1; XP_007048535.2; XP_017981542.1	478; 492; 547; 515	Pfam	PF00171; PF00171; PF00171; PF00171	Aldehyde dehydrogenase family; Aldehyde dehydrogenase family; Aldehyde dehydrogenase family; Aldehyde dehydrogenase family	IPR015590; IPR015590; IPR015590; IPR015590	Aldehyde dehydrogenase domain; Aldehyde dehydrogenase domain; Aldehyde dehydrogenase domain; Aldehyde dehydrogenase domain
hsd_id_Theobroma_cacao_2161	XP_007046783.2; XP_017981695.1; XP_007048444.2	920; 837; 815	Pfam	PF03141; PF03141; PF03141	Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159; IPR004159; IPR004159	Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase
hsd_id_Theobroma_cacao_2162	XP_007046789.2; XP_017981769.1; XP_017972485.1	371; 383; 361	Pfam	PF00892; PF00892; PF00892	EamA-like transporter family; EamA-like transporter family; EamA-like transporter family	IPR000620; IPR000620; IPR000620	EamA domain; EamA domain; EamA domain
hsd_id_Theobroma_cacao_2163	XP_007046824.2; XP_017969292.1; XP_007048386.2	505; 492; 466	Pfam	PF14363, PF00004; PF00004, PF14363; PF00004, PF14363	Domain associated at C-terminal with AAA, ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA), Domain associated at C-terminal with AAA; ATPase family associated with various cellular activities (AAA), Domain associated at C-terminal with AAA	IPR025753, IPR003959; IPR003959, IPR025753; IPR003959, IPR025753	AAA-type ATPase, N-terminal domain, ATPase, AAA-type, core; ATPase, AAA-type, core, AAA-type ATPase, N-terminal domain; ATPase, AAA-type, core, AAA-type ATPase, N-terminal domain
hsd_id_Theobroma_cacao_2164	XP_007046861.1; XP_007046868.2	220; 276	Pfam	PF01569; PF01569	PAP2 superfamily; PAP2 superfamily	IPR000326; IPR000326	Phosphatidic acid phosphatase type 2/haloperoxidase; Phosphatidic acid phosphatase type 2/haloperoxidase
hsd_id_Theobroma_cacao_2165	XP_007046883.2; XP_017977651.1; XP_007051388.2	215; 216; 216	Pfam	PF00719; PF00719; PF00719	Inorganic pyrophosphatase; Inorganic pyrophosphatase; Inorganic pyrophosphatase	IPR008162; IPR008162; IPR008162	Inorganic pyrophosphatase; Inorganic pyrophosphatase; Inorganic pyrophosphatase
hsd_id_Theobroma_cacao_2166	XP_007046926.1; XP_017970051.1; XP_017970120.1	314; 316; 344	Pfam	PF00561; PF00561; PF00561	alpha/beta hydrolase fold; alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR000073; IPR000073; IPR000073	Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1
hsd_id_Theobroma_cacao_2167	XP_007046943.1; XP_017977377.1	166; 140	Pfam	PF01217; PF01217	Clathrin adaptor complex small chain; Clathrin adaptor complex small chain	IPR022775; IPR022775	AP complex, mu/sigma subunit; AP complex, mu/sigma subunit
hsd_id_Theobroma_cacao_2168	XP_007046949.2; XP_017981341.1	292; 296	Pfam	PF03765, PF00650; PF03765, PF00650	CRAL/TRIO, N-terminal domain, CRAL/TRIO domain; CRAL/TRIO, N-terminal domain, CRAL/TRIO domain	IPR011074, IPR001251; IPR011074, IPR001251	CRAL/TRIO, N-terminal domain, CRAL-TRIO lipid binding domain; CRAL/TRIO, N-terminal domain, CRAL-TRIO lipid binding domain
hsd_id_Theobroma_cacao_2169	XP_007047010.2; XP_007047011.2; XP_017971763.1; XP_017969432.1; XP_007047012.2; XP_017972187.1; XP_017969752.1	479; 476; 476; 481; 477; 472; 477	Pfam	PF00201; PF00201; PF00201; PF00201; PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_2170	XP_007047023.2; XP_017970007.1	183; 183	Pfam	PF00179; PF00179	Ubiquitin-conjugating enzyme; Ubiquitin-conjugating enzyme	IPR000608; IPR000608	Ubiquitin-conjugating enzyme E2; Ubiquitin-conjugating enzyme E2
hsd_id_Theobroma_cacao_2171	XP_007047090.2; XP_017970669.1	161; 178	Pfam	PF14009; PF14009	Domain of unknown function (DUF4228); Domain of unknown function (DUF4228)	IPR025322; IPR025322	Protein of unknown function DUF4228, plant; Protein of unknown function DUF4228, plant
hsd_id_Theobroma_cacao_2172	XP_007047094.1; XP_017970545.1	202; 203	Pfam	PF05562; PF05562	Cold acclimation protein WCOR413; Cold acclimation protein WCOR413	IPR008892; IPR008892	Cold-regulated 413 protein; Cold-regulated 413 protein
hsd_id_Theobroma_cacao_2173	XP_007047158.2; XP_017979434.1	820; 820	Pfam	PF00931, PF05659; PF00931, PF05659	NB-ARC domain, Arabidopsis broad-spectrum mildew resistance protein RPW8; NB-ARC domain, Arabidopsis broad-spectrum mildew resistance protein RPW8	IPR002182, IPR008808; IPR002182, IPR008808	NB-ARC, Powdery mildew resistance protein, RPW8 domain; NB-ARC, Powdery mildew resistance protein, RPW8 domain
hsd_id_Theobroma_cacao_2174	XP_007047270.2; XP_017972258.1; XP_007047273.1; XP_017981643.1; XP_007047277.2	486; 477; 479; 479; 498	Pfam	PF01764; PF01764; PF01764; PF01764; PF01764	Lipase (class 3); Lipase (class 3); Lipase (class 3); Lipase (class 3); Lipase (class 3)	IPR002921; IPR002921; IPR002921; IPR002921; IPR002921	Fungal lipase-like domain; Fungal lipase-like domain; Fungal lipase-like domain; Fungal lipase-like domain; Fungal lipase-like domain
hsd_id_Theobroma_cacao_2175	XP_007047291.2; XP_017983967.1; XP_017975209.1	494; 489; 497	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2176	XP_007047360.2; XP_017975047.1; XP_007047361.2	327; 330; 330	Pfam	PF14226, PF03171; PF14226, PF03171; PF14226, PF03171	non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily	IPR026992, IPR044861; IPR026992, IPR044861; IPR026992, IPR044861	Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain
hsd_id_Theobroma_cacao_2177	XP_007047433.1; XP_017981748.1	510; 541	Pfam	PF01566; PF01566	Natural resistance-associated macrophage protein; Natural resistance-associated macrophage protein	IPR001046; IPR001046	NRAMP family; NRAMP family
hsd_id_Theobroma_cacao_2178	XP_007047435.2; XP_017981552.1	647; 638	Pfam	PF14541, PF14543; PF14541, PF14543	Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal	IPR032799, IPR032861; IPR032799, IPR032861	Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal
hsd_id_Theobroma_cacao_2179	XP_007047498.1; XP_017978092.1	407; 411	Pfam	PF00583; PF00583	Acetyltransferase (GNAT) family; Acetyltransferase (GNAT) family	IPR000182; IPR000182	GNAT domain; GNAT domain
hsd_id_Theobroma_cacao_2180	XP_007047542.1; XP_017972003.1; XP_017974705.1	184; 184; 184	Pfam	PF00025; PF00025; PF00025	ADP-ribosylation factor family; ADP-ribosylation factor family; ADP-ribosylation factor family	IPR006689; IPR006689; IPR006689	Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type; Small GTPase superfamily, ARF/SAR type
hsd_id_Theobroma_cacao_2181	XP_007047594.1; XP_007032940.1; XP_007045693.1; XP_017971847.1; XP_007017624.1; XP_017970105.1	186; 181; 197; 161; 160; 163	Pfam	PF00170; PF00170; PF00170; PF00170; PF00170; PF00170	bZIP transcription factor; bZIP transcription factor; bZIP transcription factor; bZIP transcription factor; bZIP transcription factor; bZIP transcription factor	IPR004827; IPR004827; IPR004827; IPR004827; IPR004827; IPR004827	Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain; Basic-leucine zipper domain
hsd_id_Theobroma_cacao_2182	XP_007047599.2; XP_007047600.1	259; 256	Pfam	PF13911; PF13911	AhpC/TSA antioxidant enzyme; AhpC/TSA antioxidant enzyme	IPR032801; IPR032801	Peroxiredoxin-like 2A/B/C; Peroxiredoxin-like 2A/B/C
hsd_id_Theobroma_cacao_2183	XP_007047642.2; XP_017980933.1	128; 135	Pfam	PF17181; PF17181	Epidermal patterning factor proteins; Epidermal patterning factor proteins	-; -	-; -
hsd_id_Theobroma_cacao_2184	XP_007047665.2; XP_017971736.1; XP_017970242.1	362; 360; 430	Pfam	PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_2185	XP_007047667.2; XP_007050583.2	324; 317	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_2186	XP_007047716.2; XP_017972010.1; XP_017975945.1; XP_007047722.2; XP_017979687.1; XP_017979686.1	651; 651; 651; 652; 651; 650	Pfam	PF00069, PF00139; PF00069, PF00139; PF00139, PF00069; PF00069, PF00139; PF00139, PF00069; PF00139, PF00069	Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain	IPR000719, IPR001220; IPR000719, IPR001220; IPR001220, IPR000719; IPR000719, IPR001220; IPR001220, IPR000719; IPR001220, IPR000719	Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain
hsd_id_Theobroma_cacao_2187	XP_007047736.2; XP_017980789.1	1068; 1071	Pfam	PF11721, PF00225; PF00225, PF11721	Malectin domain, Kinesin motor domain; Kinesin motor domain, Malectin domain	IPR021720, IPR001752; IPR001752, IPR021720	Malectin domain, Kinesin motor domain; Kinesin motor domain, Malectin domain
hsd_id_Theobroma_cacao_2188	XP_007047741.2; XP_017976897.1; XP_007052561.1	135; 144; 192	Pfam	PF01754, PF01428; PF01428, PF01754; PF01428, PF01754	A20-like zinc finger, AN1-like Zinc finger; AN1-like Zinc finger, A20-like zinc finger; AN1-like Zinc finger, A20-like zinc finger	IPR002653, IPR000058; IPR000058, IPR002653; IPR000058, IPR002653	Zinc finger, A20-type, Zinc finger, AN1-type; Zinc finger, AN1-type, Zinc finger, A20-type; Zinc finger, AN1-type, Zinc finger, A20-type
hsd_id_Theobroma_cacao_2189	XP_007047791.2; XP_017981091.1	518; 518	Pfam	PF10250; PF10250	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase	IPR019378; IPR019378	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase
hsd_id_Theobroma_cacao_2190	XP_007047825.1; XP_007047826.2; XP_017981660.1; XP_017981661.1	234; 227; 237; 243	Pfam	PF03959; PF03959; PF03959; PF03959	Serine hydrolase (FSH1); Serine hydrolase (FSH1); Serine hydrolase (FSH1); Serine hydrolase (FSH1)	IPR005645; IPR005645; IPR005645; IPR005645	Serine hydrolase FSH; Serine hydrolase FSH; Serine hydrolase FSH; Serine hydrolase FSH
hsd_id_Theobroma_cacao_2191	XP_007047900.2; XP_017981715.1	319; 321	Pfam	PF00646; PF00646	F-box domain; F-box domain	IPR001810; IPR001810	F-box domain; F-box domain
hsd_id_Theobroma_cacao_2192	XP_007047968.2; XP_007051060.1	152; 185	Pfam	PF05553; PF05553	Cotton fibre expressed protein; Cotton fibre expressed protein	IPR008480; IPR008480	Protein of unknown function DUF761, plant; Protein of unknown function DUF761, plant
hsd_id_Theobroma_cacao_2193	XP_007048008.2; XP_017980877.1; XP_017980971.1	498; 507; 507	Pfam	PF00150; PF00150; PF00150	Cellulase (glycosyl hydrolase family 5); Cellulase (glycosyl hydrolase family 5); Cellulase (glycosyl hydrolase family 5)	IPR001547; IPR001547; IPR001547	Glycoside hydrolase, family 5; Glycoside hydrolase, family 5; Glycoside hydrolase, family 5
hsd_id_Theobroma_cacao_2194	XP_007048189.2; XP_007047994.2; XP_017981331.1	386; 378; 378	Pfam	PF00847; PF00847; PF00847	AP2 domain; AP2 domain; AP2 domain	IPR001471; IPR001471; IPR001471	AP2/ERF domain; AP2/ERF domain; AP2/ERF domain
hsd_id_Theobroma_cacao_2195	XP_007048194.2; XP_017976024.1	339; 343	Pfam	PF01113, PF05173; PF05173, PF01113	Dihydrodipicolinate reductase, N-terminus, Dihydrodipicolinate reductase, C-terminus; Dihydrodipicolinate reductase, C-terminus, Dihydrodipicolinate reductase, N-terminus	IPR000846, IPR022663; IPR022663, IPR000846	Dihydrodipicolinate reductase, N-terminal, Dihydrodipicolinate reductase, C-terminal; Dihydrodipicolinate reductase, C-terminal, Dihydrodipicolinate reductase, N-terminal
hsd_id_Theobroma_cacao_2196	XP_017971840.1; XP_007048221.2; XP_017975880.1; XP_017981078.1; XP_017981076.1	352; 352; 366; 360; 360	Pfam	PF00892; PF00892; PF00892; PF00892; PF00892	EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family; EamA-like transporter family	IPR000620; IPR000620; IPR000620; IPR000620; IPR000620	EamA domain; EamA domain; EamA domain; EamA domain; EamA domain
hsd_id_Theobroma_cacao_2197	XP_007048307.2; XP_017970847.1	648; 639	Pfam	PF12796, PF13962; PF13962, PF12796	Ankyrin repeats (3 copies), Domain of unknown function; Domain of unknown function, Ankyrin repeats (3 copies)	IPR020683, IPR026961; IPR026961, IPR020683	Ankyrin repeat-containing domain, PGG domain; PGG domain, Ankyrin repeat-containing domain
hsd_id_Theobroma_cacao_2198	XP_007048324.1; XP_017976493.1	160; 132	Pfam	PF01196; PF01196	Ribosomal protein L17; Ribosomal protein L17	IPR000456; IPR000456	Ribosomal protein L17; Ribosomal protein L17
hsd_id_Theobroma_cacao_2199	XP_007048361.2; XP_017972563.1; XP_007050779.2	425; 418; 378	Pfam	PF00743; PF00743; PF00743	Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like; Flavin-binding monooxygenase-like	IPR020946; IPR020946; IPR020946	Flavin monooxygenase-like; Flavin monooxygenase-like; Flavin monooxygenase-like
hsd_id_Theobroma_cacao_2200	XP_007048393.2; XP_017983747.1	398; 393	Pfam	PF03151; PF03151	Triose-phosphate Transporter family; Triose-phosphate Transporter family	IPR004853; IPR004853	Sugar phosphate transporter domain; Sugar phosphate transporter domain
hsd_id_Theobroma_cacao_2201	XP_007048400.2; XP_017973864.1	296; 296	Pfam	PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930	Myb domain; Myb domain
hsd_id_Theobroma_cacao_2202	XP_007048422.2; XP_017981818.1; XP_017981843.1	486; 492; 482	Pfam	PF00676; PF00676; PF00676	Dehydrogenase E1 component; Dehydrogenase E1 component; Dehydrogenase E1 component	IPR001017; IPR001017; IPR001017	Dehydrogenase, E1 component; Dehydrogenase, E1 component; Dehydrogenase, E1 component
hsd_id_Theobroma_cacao_2203	XP_007048430.2; XP_017978586.1	290; 205	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2204	XP_007048437.2; XP_017970162.1; XP_007048440.2; XP_007048439.2; XP_017983085.1	458; 393; 461; 493; 499	Pfam	PF14416, PF13839; PF13839, PF14416; PF14416, PF13839; PF14416, PF13839; PF13839, PF14416	PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain	IPR025846, IPR026057; IPR026057, IPR025846; IPR025846, IPR026057; IPR025846, IPR026057; IPR026057, IPR025846	PMR5 N-terminal domain, PC-Esterase; PC-Esterase, PMR5 N-terminal domain; PMR5 N-terminal domain, PC-Esterase; PMR5 N-terminal domain, PC-Esterase; PC-Esterase, PMR5 N-terminal domain
hsd_id_Theobroma_cacao_2205	XP_007048485.2; XP_017981697.1	726; 771	Pfam	PF00069, PF00582; PF00069, PF00582	Protein kinase domain, Universal stress protein family; Protein kinase domain, Universal stress protein family	IPR000719, IPR006016; IPR000719, IPR006016	Protein kinase domain, UspA; Protein kinase domain, UspA
hsd_id_Theobroma_cacao_2206	XP_007048496.2; XP_017969515.1	607; 638	Pfam	PF18117, PF01764; PF01764, PF18117	Enhanced disease susceptibility 1 protein EP domain, Lipase (class 3); Lipase (class 3), Enhanced disease susceptibility 1 protein EP domain	IPR041266, IPR002921; IPR002921, IPR041266	EDS1, EP domain, Fungal lipase-like domain; Fungal lipase-like domain, EDS1, EP domain
hsd_id_Theobroma_cacao_2207	XP_007048501.2; XP_017983790.1; XP_017982046.1; XP_017980568.1	356; 383; 377; 384	Pfam	PF03151; PF03151; PF03151; PF03151	Triose-phosphate Transporter family; Triose-phosphate Transporter family; Triose-phosphate Transporter family; Triose-phosphate Transporter family	IPR004853; IPR004853; IPR004853; IPR004853	Sugar phosphate transporter domain; Sugar phosphate transporter domain; Sugar phosphate transporter domain; Sugar phosphate transporter domain
hsd_id_Theobroma_cacao_2208	XP_007048558.2; XP_017971453.1	243; 282	Pfam	PF15346; PF15346	Arginine and glutamate-rich 1; Arginine and glutamate-rich 1	IPR033371; IPR033371	Arginine and glutamate-rich protein 1; Arginine and glutamate-rich protein 1
hsd_id_Theobroma_cacao_2209	XP_007048565.2; XP_017982287.1	1394; 1386	Pfam	PF03144, PF11987, PF00009; PF00009, PF11987, PF03144	Elongation factor Tu domain 2, Translation-initiation factor 2, Elongation factor Tu GTP binding domain; Elongation factor Tu GTP binding domain, Translation-initiation factor 2, Elongation factor Tu domain 2	IPR004161, IPR023115, IPR000795; IPR000795, IPR023115, IPR004161	Translation elongation factor EFTu-like, domain 2, Translation initiation factor IF- 2, domain 3, Translational (tr)-type GTP-binding domain; Translational (tr)-type GTP-binding domain, Translation initiation factor IF- 2, domain 3, Translation elongation factor EFTu-like, domain 2
hsd_id_Theobroma_cacao_2210	XP_007048644.2; XP_007048646.2	150; 157	Pfam	PF03061; PF03061	Thioesterase superfamily; Thioesterase superfamily	IPR006683; IPR006683	Thioesterase domain; Thioesterase domain
hsd_id_Theobroma_cacao_2211	XP_007048657.2; XP_017982441.1	517; 514	Pfam	PF13839, PF14416; PF14416, PF13839	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain; PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p	IPR026057, IPR025846; IPR025846, IPR026057	PC-Esterase, PMR5 N-terminal domain; PMR5 N-terminal domain, PC-Esterase
hsd_id_Theobroma_cacao_2212	XP_007048671.2; XP_017979305.1; XP_007048672.2	588; 595; 525	Pfam	PF07991, PF01450; PF01450, PF07991; PF07991, PF01450	Acetohydroxy acid isomeroreductase, NADPH-binding domain, Acetohydroxy acid isomeroreductase, catalytic domain; Acetohydroxy acid isomeroreductase, catalytic domain, Acetohydroxy acid isomeroreductase, NADPH-binding domain; Acetohydroxy acid isomeroreductase, NADPH-binding domain, Acetohydroxy acid isomeroreductase, catalytic domain	IPR013116, IPR000506; IPR000506, IPR013116; IPR013116, IPR000506	Ketol-acid reductoisomerase, N-terminal, Ketol-acid reductoisomerase, C-terminal; Ketol-acid reductoisomerase, C-terminal, Ketol-acid reductoisomerase, N-terminal; Ketol-acid reductoisomerase, N-terminal, Ketol-acid reductoisomerase, C-terminal
hsd_id_Theobroma_cacao_2213	XP_007048709.1; XP_017978415.1	239; 244	Pfam	PF07847; PF07847	PCO_ADO; PCO_ADO	IPR012864; IPR012864	Cysteine oxygenase/2-aminoethanethiol dioxygenase; Cysteine oxygenase/2-aminoethanethiol dioxygenase
hsd_id_Theobroma_cacao_2214	XP_007048712.2; XP_007048713.2	411; 420	Pfam	PF01764; PF01764	Lipase (class 3); Lipase (class 3)	IPR002921; IPR002921	Fungal lipase-like domain; Fungal lipase-like domain
hsd_id_Theobroma_cacao_2215	XP_007048733.1; XP_017979098.1	182; 182	Pfam	PF00673, PF00281; PF00673, PF00281	ribosomal L5P family C-terminus, Ribosomal protein L5; ribosomal L5P family C-terminus, Ribosomal protein L5	IPR031309, IPR031310; IPR031309, IPR031310	Ribosomal protein L5, C-terminal, Ribosomal protein L5, N-terminal; Ribosomal protein L5, C-terminal, Ribosomal protein L5, N-terminal
hsd_id_Theobroma_cacao_2216	XP_007048745.2; XP_017985331.1	1127; 1134	Pfam	PF08263, PF13855, PF00069; PF08263, PF13855, PF00069	Leucine rich repeat N-terminal domain, Leucine rich repeat, Protein kinase domain; Leucine rich repeat N-terminal domain, Leucine rich repeat, Protein kinase domain	IPR013210, IPR001611, IPR000719; IPR013210, IPR001611, IPR000719	Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Protein kinase domain; Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Protein kinase domain
hsd_id_Theobroma_cacao_2217	XP_007048778.2; XP_017970453.1; XP_017981295.1	213; 207; 217	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2218	XP_007048814.2; XP_017976270.1	555; 459	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_2219	XP_007048869.2; XP_017979162.1; XP_017969851.1	390; 436; 388	Pfam	PF07885; PF07885; PF07885	Ion channel; Ion channel; Ion channel	IPR013099; IPR013099; IPR013099	Potassium channel domain; Potassium channel domain; Potassium channel domain
hsd_id_Theobroma_cacao_2220	XP_007048939.2; XP_017979470.1	267; 276	Pfam	PF03798; PF03798	TLC domain; TLC domain	IPR006634; IPR006634	TRAM/LAG1/CLN8 homology domain; TRAM/LAG1/CLN8 homology domain
hsd_id_Theobroma_cacao_2221	XP_007049013.2; XP_017980073.1; XP_017980072.1	75; 88; 88	Pfam	PF12734; PF12734; PF12734	Cysteine-rich TM module stress tolerance; Cysteine-rich TM module stress tolerance; Cysteine-rich TM module stress tolerance	IPR028144; IPR028144; IPR028144	Cysteine-rich transmembrane CYSTM domain; Cysteine-rich transmembrane CYSTM domain; Cysteine-rich transmembrane CYSTM domain
hsd_id_Theobroma_cacao_2222	XP_007049034.2; XP_017973538.1; XP_017971394.1; XP_017983768.1; XP_007049040.2	842; 843; 891; 753; 883	Pfam	PF03101, PF10551, PF04434; PF10551, PF04434, PF03101; PF03101, PF10551, PF04434; PF03101, PF04434, PF10551; PF10551, PF03101, PF04434	FAR1 DNA-binding domain, MULE transposase domain, SWIM zinc finger; MULE transposase domain, SWIM zinc finger, FAR1 DNA-binding domain; FAR1 DNA-binding domain, MULE transposase domain, SWIM zinc finger; FAR1 DNA-binding domain, SWIM zinc finger, MULE transposase domain; MULE transposase domain, FAR1 DNA-binding domain, SWIM zinc finger	IPR004330, IPR018289, IPR007527; IPR018289, IPR007527, IPR004330; IPR004330, IPR018289, IPR007527; IPR004330, IPR007527, IPR018289; IPR018289, IPR004330, IPR007527	FAR1 DNA binding domain, MULE transposase domain, Zinc finger, SWIM-type; MULE transposase domain, Zinc finger, SWIM-type, FAR1 DNA binding domain; FAR1 DNA binding domain, MULE transposase domain, Zinc finger, SWIM-type; FAR1 DNA binding domain, Zinc finger, SWIM-type, MULE transposase domain; MULE transposase domain, FAR1 DNA binding domain, Zinc finger, SWIM-type
hsd_id_Theobroma_cacao_2223	XP_007049063.2; XP_017973253.1	207; 141	Pfam	PF01294; PF01294	Ribosomal protein L13e; Ribosomal protein L13e	IPR001380; IPR001380	Ribosomal protein L13e; Ribosomal protein L13e
hsd_id_Theobroma_cacao_2224	XP_007049091.2; XP_017969417.1	750; 747	Pfam	PF03552; PF03552	Cellulose synthase; Cellulose synthase	IPR005150; IPR005150	Cellulose synthase; Cellulose synthase
hsd_id_Theobroma_cacao_2225	XP_007049115.2; XP_017979600.1	670; 668	Pfam	PF05786; PF05786	Condensin complex subunit 2; Condensin complex subunit 2	IPR022816; IPR022816	Condensin complex subunit 2/barren; Condensin complex subunit 2/barren
hsd_id_Theobroma_cacao_2226	XP_007049172.2; XP_007049747.1	104; 109	Pfam	PF11976; PF11976	Ubiquitin-2 like Rad60 SUMO-like; Ubiquitin-2 like Rad60 SUMO-like	IPR022617; IPR022617	Rad60/SUMO-like domain; Rad60/SUMO-like domain
hsd_id_Theobroma_cacao_2227	XP_007049188.2; XP_017978848.1	694; 701	Pfam	PF13923, PF00400; PF13923, PF00400	Zinc finger, C3HC4 type (RING finger), WD domain, G-beta repeat; Zinc finger, C3HC4 type (RING finger), WD domain, G-beta repeat	-, IPR001680; -, IPR001680	-, WD40 repeat; -, WD40 repeat
hsd_id_Theobroma_cacao_2228	XP_007049194.2; XP_017982739.1	903; 913	Pfam	PF02170, PF02171, PF08699, PF16488, PF16486; PF02170, PF08699, PF16488, PF02171, PF16486	PAZ domain, Piwi domain, Argonaute linker 1 domain, Argonaute linker 2 domain, N-terminal domain of argonaute; PAZ domain, Argonaute linker 1 domain, Argonaute linker 2 domain, Piwi domain, N-terminal domain of argonaute	IPR003100, IPR003165, IPR014811, IPR032472, IPR032474; IPR003100, IPR014811, IPR032472, IPR003165, IPR032474	PAZ domain, Piwi domain, Argonaute, linker 1 domain, Argonaute linker 2 domain, Protein argonaute, N-terminal; PAZ domain, Argonaute, linker 1 domain, Argonaute linker 2 domain, Piwi domain, Protein argonaute, N-terminal
hsd_id_Theobroma_cacao_2229	XP_007049225.2; XP_017978444.1; XP_017974174.1; XP_007050212.2	253; 285; 251; 234	Pfam	PF02115; PF02115; PF02115; PF02115	RHO protein GDP dissociation inhibitor; RHO protein GDP dissociation inhibitor; RHO protein GDP dissociation inhibitor; RHO protein GDP dissociation inhibitor	IPR000406; IPR000406; IPR000406; IPR000406	Rho protein GDP-dissociation inhibitor; Rho protein GDP-dissociation inhibitor; Rho protein GDP-dissociation inhibitor; Rho protein GDP-dissociation inhibitor
hsd_id_Theobroma_cacao_2230	XP_007049241.2; XP_017974812.1	137; 135	Pfam	PF13499; PF13499	EF-hand domain pair; EF-hand domain pair	IPR002048; IPR002048	EF-hand domain; EF-hand domain
hsd_id_Theobroma_cacao_2231	XP_007049245.2; XP_007051647.1	142; 145	Pfam	PF01176; PF01176	Translation initiation factor 1A / IF-1; Translation initiation factor 1A / IF-1	IPR006196; IPR006196	RNA-binding domain, S1, IF1 type; RNA-binding domain, S1, IF1 type
hsd_id_Theobroma_cacao_2232	XP_007049266.1; XP_017978554.1; XP_007049625.1	395; 399; 398	Pfam	PF03188, PF04526; PF03188, PF04526; PF03188, PF04526	Eukaryotic cytochrome b561, Protein of unknown function (DUF568); Eukaryotic cytochrome b561, Protein of unknown function (DUF568); Eukaryotic cytochrome b561, Protein of unknown function (DUF568)	IPR006593, IPR005018; IPR006593, IPR005018; IPR006593, IPR005018	Cytochrome b561/ferric reductase transmembrane, DOMON domain; Cytochrome b561/ferric reductase transmembrane, DOMON domain; Cytochrome b561/ferric reductase transmembrane, DOMON domain
hsd_id_Theobroma_cacao_2233	XP_007049370.2; XP_017979567.1; XP_017979264.1	367; 293; 334	Pfam	PF00293, PF18290; PF00293, PF18290; PF00293, PF18290	NUDIX domain, Nudix hydrolase domain; NUDIX domain, Nudix hydrolase domain; NUDIX domain, Nudix hydrolase domain	IPR000086, IPR040618; IPR000086, IPR040618; IPR000086, IPR040618	NUDIX hydrolase domain, Pre-nudix hydrolase domain; NUDIX hydrolase domain, Pre-nudix hydrolase domain; NUDIX hydrolase domain, Pre-nudix hydrolase domain
hsd_id_Theobroma_cacao_2234	XP_007049505.2; XP_017974955.1	253; 240	Pfam	PF12579; PF12579	Protein of unknown function (DUF3755); Protein of unknown function (DUF3755)	IPR022228; IPR022228	Protein of unknown function DUF3755; Protein of unknown function DUF3755
hsd_id_Theobroma_cacao_2235	XP_007049603.2; XP_017985277.1	161; 140	Pfam	PF18029; PF18029	Glyoxalase-like domain; Glyoxalase-like domain	IPR041581; IPR041581	Glyoxalase-like domain, group 6; Glyoxalase-like domain, group 6
hsd_id_Theobroma_cacao_2236	XP_007049604.2; XP_017974307.1	99; 102	Pfam	PF14368; PF14368	Probable lipid transfer; Probable lipid transfer	IPR016140; IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
hsd_id_Theobroma_cacao_2237	XP_007049662.2; XP_017974276.1	424; 419	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2238	XP_007049692.2; XP_017973494.1; XP_017975698.1	476; 453; 457	Pfam	PF02136, PF00076; PF00076, PF02136; PF00076, PF02136	Nuclear transport factor 2 (NTF2) domain, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Nuclear transport factor 2 (NTF2) domain; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Nuclear transport factor 2 (NTF2) domain	IPR002075, IPR000504; IPR000504, IPR002075; IPR000504, IPR002075	Nuclear transport factor 2, RNA recognition motif domain; RNA recognition motif domain, Nuclear transport factor 2; RNA recognition motif domain, Nuclear transport factor 2
hsd_id_Theobroma_cacao_2239	XP_007049698.2; XP_017976809.1	47; 47	Pfam	PF08186; PF08186	Wound-inducible basic protein family; Wound-inducible basic protein family	IPR012643; IPR012643	Wound-inducible basic; Wound-inducible basic
hsd_id_Theobroma_cacao_2240	XP_007049780.2; XP_017975712.1	620; 636	Pfam	PF00651, PF03000; PF00651, PF03000	BTB/POZ domain, NPH3 family; BTB/POZ domain, NPH3 family	IPR000210, IPR027356; IPR000210, IPR027356	BTB/POZ domain, NPH3 domain; BTB/POZ domain, NPH3 domain
hsd_id_Theobroma_cacao_2241	XP_007049825.2; XP_017975674.1	468; 465	Pfam	PF00108, PF02803; PF02803, PF00108	Thiolase, N-terminal domain, Thiolase, C-terminal domain; Thiolase, C-terminal domain, Thiolase, N-terminal domain	IPR020616, IPR020617; IPR020617, IPR020616	Thiolase, N-terminal, Thiolase, C-terminal; Thiolase, C-terminal, Thiolase, N-terminal
hsd_id_Theobroma_cacao_2242	XP_007049870.1; XP_017970529.1	107; 155	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2243	XP_007049876.2; XP_007049875.2; XP_017970323.1	160; 151; 146	Pfam	PF05938; PF05938; PF05938	Plant self-incompatibility protein S1; Plant self-incompatibility protein S1; Plant self-incompatibility protein S1	IPR010264; IPR010264; IPR010264	Plant self-incompatibility S1; Plant self-incompatibility S1; Plant self-incompatibility S1
hsd_id_Theobroma_cacao_2244	XP_007049878.1; XP_017969550.1	446; 446	Pfam	PF16450, PF00004, PF17862; PF16450, PF00004, PF17862	Proteasomal ATPase OB C-terminal domain, ATPase family associated with various cellular activities (AAA), AAA+ lid domain; Proteasomal ATPase OB C-terminal domain, ATPase family associated with various cellular activities (AAA), AAA+ lid domain	IPR032501, IPR003959, IPR041569; IPR032501, IPR003959, IPR041569	Proteasomal ATPase OB C-terminal domain, ATPase, AAA-type, core, AAA ATPase, AAA+ lid domain; Proteasomal ATPase OB C-terminal domain, ATPase, AAA-type, core, AAA ATPase, AAA+ lid domain
hsd_id_Theobroma_cacao_2245	XP_007050077.1; XP_017975980.1	141; 158	Pfam	PF02427; PF02427	Photosystem I reaction centre subunit IV / PsaE; Photosystem I reaction centre subunit IV / PsaE	IPR003375; IPR003375	Photosystem I PsaE, reaction centre subunit IV; Photosystem I PsaE, reaction centre subunit IV
hsd_id_Theobroma_cacao_2246	XP_007050174.1; XP_017975635.1	105; 104	Pfam	PF04281; PF04281	Mitochondrial import receptor subunit Tom22; Mitochondrial import receptor subunit Tom22	IPR005683; IPR005683	Mitochondrial import receptor subunit Tom22; Mitochondrial import receptor subunit Tom22
hsd_id_Theobroma_cacao_2247	XP_007050220.2; XP_017975371.1	740; 750	Pfam	PF00732, PF05199; PF05199, PF00732	GMC oxidoreductase, GMC oxidoreductase; GMC oxidoreductase, GMC oxidoreductase	IPR000172, IPR007867; IPR007867, IPR000172	Glucose-methanol-choline oxidoreductase, N-terminal, Glucose-methanol-choline oxidoreductase, C-terminal; Glucose-methanol-choline oxidoreductase, C-terminal, Glucose-methanol-choline oxidoreductase, N-terminal
hsd_id_Theobroma_cacao_2248	XP_007050222.2; XP_017969683.1	498; 527	Pfam	PF09328, PF05023; PF09328, PF05023	Domain of unknown function (DUF1984), Phytochelatin synthase; Domain of unknown function (DUF1984), Phytochelatin synthase	IPR015407, IPR007719; IPR015407, IPR007719	Phytochelatin synthase, C-terminal, Phytochelatin synthase, N-terminal catalytic domain; Phytochelatin synthase, C-terminal, Phytochelatin synthase, N-terminal catalytic domain
hsd_id_Theobroma_cacao_2249	XP_007050241.2; XP_017969872.1	510; 441	Pfam	PF03514; PF03514	GRAS domain family; GRAS domain family	IPR005202; IPR005202	Transcription factor GRAS; Transcription factor GRAS
hsd_id_Theobroma_cacao_2250	XP_007050242.2; XP_017979209.1	560; 567	Pfam	PF00433, PF00069; PF00433, PF00069	Protein kinase C terminal domain, Protein kinase domain; Protein kinase C terminal domain, Protein kinase domain	IPR017892, IPR000719; IPR017892, IPR000719	Protein kinase, C-terminal, Protein kinase domain; Protein kinase, C-terminal, Protein kinase domain
hsd_id_Theobroma_cacao_2251	XP_007050321.1; XP_017971560.1	341; 340	Pfam	PF03171, PF14226; PF14226, PF03171	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily	IPR044861, IPR026992; IPR026992, IPR044861	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain
hsd_id_Theobroma_cacao_2252	XP_007050413.1; XP_017975994.1	135; 135	Pfam	PF07123; PF07123	Photosystem II reaction centre W protein (PsbW); Photosystem II reaction centre W protein (PsbW)	IPR009806; IPR009806	Photosystem II PsbW, class 2; Photosystem II PsbW, class 2
hsd_id_Theobroma_cacao_2253	XP_007050434.1; XP_017976087.1	130; 130	Pfam	PF01990; PF01990	ATP synthase (F/14-kDa) subunit; ATP synthase (F/14-kDa) subunit	IPR008218; IPR008218	ATPase, V1 complex, subunit F; ATPase, V1 complex, subunit F
hsd_id_Theobroma_cacao_2254	XP_007050608.2; XP_007034708.2; XP_017970588.1; XP_017977130.1	179; 187; 183; 112	Pfam	PF02298; PF02298; PF02298; PF02298	Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain; Plastocyanin-like domain	IPR003245; IPR003245; IPR003245; IPR003245	Phytocyanin domain; Phytocyanin domain; Phytocyanin domain; Phytocyanin domain
hsd_id_Theobroma_cacao_2255	XP_007050651.2; XP_017969303.1	114; 115	Pfam	PF01423; PF01423	LSM domain; LSM domain	IPR001163; IPR001163	LSM domain, eukaryotic/archaea-type; LSM domain, eukaryotic/archaea-type
hsd_id_Theobroma_cacao_2256	XP_007050656.2; XP_017979978.1	299; 331	Pfam	PF02567; PF02567	Phenazine biosynthesis-like protein; Phenazine biosynthesis-like protein	IPR003719; IPR003719	Phenazine biosynthesis PhzF protein; Phenazine biosynthesis PhzF protein
hsd_id_Theobroma_cacao_2257	XP_007050674.2; XP_017977241.1	606; 659	Pfam	PF01926; PF01926	50S ribosome-binding GTPase; 50S ribosome-binding GTPase	IPR006073; IPR006073	GTP binding domain; GTP binding domain
hsd_id_Theobroma_cacao_2258	XP_007050676.2; XP_017969481.1; XP_017978933.1; XP_017973834.1	751; 768; 771; 804	Pfam	PF14703, PF13967, PF02714; PF14703, PF13967, PF02714; PF14703, PF02714, PF13967; PF02714, PF14703, PF13967	Cytosolic domain of 10TM putative phosphate transporter, Late exocytosis, associated with Golgi transport, Calcium-dependent channel, 7TM region, putative phosphate; Cytosolic domain of 10TM putative phosphate transporter, Late exocytosis, associated with Golgi transport, Calcium-dependent channel, 7TM region, putative phosphate; Cytosolic domain of 10TM putative phosphate transporter, Calcium-dependent channel, 7TM region, putative phosphate, Late exocytosis, associated with Golgi transport; Calcium-dependent channel, 7TM region, putative phosphate, Cytosolic domain of 10TM putative phosphate transporter, Late exocytosis, associated with Golgi transport	IPR027815, IPR032880, IPR003864; IPR027815, IPR032880, IPR003864; IPR027815, IPR003864, IPR032880; IPR003864, IPR027815, IPR032880	10TM putative phosphate transporter, cytosolic domain, Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domain, Calcium-dependent channel, 7TM region, putative phosphate; 10TM putative phosphate transporter, cytosolic domain, Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domain, Calcium-dependent channel, 7TM region, putative phosphate; 10TM putative phosphate transporter, cytosolic domain, Calcium-dependent channel, 7TM region, putative phosphate, Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domain; Calcium-dependent channel, 7TM region, putative phosphate, 10TM putative phosphate transporter, cytosolic domain, Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domain
hsd_id_Theobroma_cacao_2259	XP_007050681.2; XP_017974833.1	364; 351	Pfam	PF00929; PF00929	Exonuclease; Exonuclease	IPR013520; IPR013520	Exonuclease, RNase T/DNA polymerase III; Exonuclease, RNase T/DNA polymerase III
hsd_id_Theobroma_cacao_2260	XP_007050701.2; XP_007050703.2	191; 191	Pfam	PF02041; PF02041	Auxin binding protein; Auxin binding protein	IPR000526; IPR000526	Auxin-binding protein; Auxin-binding protein
hsd_id_Theobroma_cacao_2261	XP_007050704.2; XP_017982331.1; XP_017977075.1	523; 523; 504	Pfam	PF02536; PF02536; PF02536	mTERF; mTERF; mTERF	IPR003690; IPR003690; IPR003690	Transcription termination factor, mitochondrial/chloroplastic; Transcription termination factor, mitochondrial/chloroplastic; Transcription termination factor, mitochondrial/chloroplastic
hsd_id_Theobroma_cacao_2262	XP_007050713.2; XP_017974744.1	515; 511	Pfam	PF03372; PF03372	Endonuclease/Exonuclease/phosphatase family; Endonuclease/Exonuclease/phosphatase family	IPR005135; IPR005135	Endonuclease/exonuclease/phosphatase; Endonuclease/exonuclease/phosphatase
hsd_id_Theobroma_cacao_2263	XP_007050783.2; XP_017975657.1; XP_017977096.1; XP_017976645.1; XP_017979569.1	524; 543; 543; 547; 523	Pfam	PF00999; PF00999; PF00999; PF00999; PF00999	Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family	IPR006153; IPR006153; IPR006153; IPR006153; IPR006153	Cation/H+ exchanger; Cation/H+ exchanger; Cation/H+ exchanger; Cation/H+ exchanger; Cation/H+ exchanger
hsd_id_Theobroma_cacao_2264	XP_007050834.2; XP_017979440.1	566; 572	Pfam	PF00096; PF00096	Zinc finger, C2H2 type; Zinc finger, C2H2 type	IPR013087; IPR013087	Zinc finger C2H2-type; Zinc finger C2H2-type
hsd_id_Theobroma_cacao_2265	XP_007050839.2; XP_017970280.1	780; 810	Pfam	PF02705; PF02705	K+ potassium transporter; K+ potassium transporter	IPR003855; IPR003855	Potassium transporter; Potassium transporter
hsd_id_Theobroma_cacao_2266	XP_007050860.2; XP_007051872.2; XP_017975744.1	299; 362; 370	Pfam	PF02882, PF00763; PF00763, PF02882; PF00763, PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain, Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain, Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain, Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	IPR020631, IPR020630; IPR020630, IPR020631; IPR020630, IPR020631	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain, Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain, Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain, Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
hsd_id_Theobroma_cacao_2267	XP_007050869.1; XP_017975670.1	89; 87	Pfam	PF06825; PF06825	Heat shock factor binding protein 1; Heat shock factor binding protein 1	IPR009643; IPR009643	Heat shock factor binding 1; Heat shock factor binding 1
hsd_id_Theobroma_cacao_2268	XP_007051004.2; XP_007051005.2	379; 386	Pfam	PF01190; PF01190	Pollen protein Ole e 1 like; Pollen protein Ole e 1 like	-; -	-; -
hsd_id_Theobroma_cacao_2269	XP_007051018.2; XP_017976138.1; XP_017970021.1	148; 158; 172	Pfam	PF00226; PF00226; PF00226	DnaJ domain; DnaJ domain; DnaJ domain	IPR001623; IPR001623; IPR001623	DnaJ domain; DnaJ domain; DnaJ domain
hsd_id_Theobroma_cacao_2270	XP_007051021.2; XP_017977897.1; XP_017972201.1; XP_017973685.1; XP_017975990.1	1016; 1046; 971; 1044; 1038	Pfam	PF00225, PF00307; PF00225, PF00307; PF00307, PF00225; PF00307, PF00225; PF00307, PF00225	Kinesin motor domain, Calponin homology (CH) domain; Kinesin motor domain, Calponin homology (CH) domain; Calponin homology (CH) domain, Kinesin motor domain; Calponin homology (CH) domain, Kinesin motor domain; Calponin homology (CH) domain, Kinesin motor domain	IPR001752, IPR001715; IPR001752, IPR001715; IPR001715, IPR001752; IPR001715, IPR001752; IPR001715, IPR001752	Kinesin motor domain, Calponin homology domain; Kinesin motor domain, Calponin homology domain; Calponin homology domain, Kinesin motor domain; Calponin homology domain, Kinesin motor domain; Calponin homology domain, Kinesin motor domain
hsd_id_Theobroma_cacao_2271	XP_007051086.2; XP_017976923.1	165; 175	Pfam	PF00582; PF00582	Universal stress protein family; Universal stress protein family	IPR006016; IPR006016	UspA; UspA
hsd_id_Theobroma_cacao_2272	XP_007051126.2; XP_007046368.2	724; 722	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2273	XP_007051133.1; XP_017974630.1	234; 256	Pfam	PF00160; PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	IPR002130; IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
hsd_id_Theobroma_cacao_2274	XP_007051219.2; XP_017976157.1; XP_017976380.1	371; 375; 369	Pfam	PF00657; PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_2275	XP_007051250.1; XP_017976805.1; XP_017974891.1; XP_017976989.1	393; 393; 393; 390	Pfam	PF02773, PF02772, PF00438; PF02773, PF00438, PF02772; PF02773, PF02772, PF00438; PF02772, PF00438, PF02773	S-adenosylmethionine synthetase, C-terminal domain, S-adenosylmethionine synthetase, central domain, S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, C-terminal domain, S-adenosylmethionine synthetase, N-terminal domain, S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, C-terminal domain, S-adenosylmethionine synthetase, central domain, S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain, S-adenosylmethionine synthetase, N-terminal domain, S-adenosylmethionine synthetase, C-terminal domain	IPR022630, IPR022629, IPR022628; IPR022630, IPR022628, IPR022629; IPR022630, IPR022629, IPR022628; IPR022629, IPR022628, IPR022630	S-adenosylmethionine synthetase, C-terminal, S-adenosylmethionine synthetase, central domain, S-adenosylmethionine synthetase, N-terminal; S-adenosylmethionine synthetase, C-terminal, S-adenosylmethionine synthetase, N-terminal, S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, C-terminal, S-adenosylmethionine synthetase, central domain, S-adenosylmethionine synthetase, N-terminal; S-adenosylmethionine synthetase, central domain, S-adenosylmethionine synthetase, N-terminal, S-adenosylmethionine synthetase, C-terminal
hsd_id_Theobroma_cacao_2276	XP_007051270.2; XP_017974853.1	555; 595	Pfam	PF01095, PF04043; PF01095, PF04043	Pectinesterase, Plant invertase/pectin methylesterase inhibitor; Pectinesterase, Plant invertase/pectin methylesterase inhibitor	IPR000070, IPR006501; IPR000070, IPR006501	Pectinesterase, catalytic, Pectinesterase inhibitor domain; Pectinesterase, catalytic, Pectinesterase inhibitor domain
hsd_id_Theobroma_cacao_2277	XP_007051276.1; XP_017978204.1; XP_017969839.1	494; 513; 522	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2278	XP_007051363.2; XP_007051365.1; XP_017983634.1	412; 404; 392	Pfam	PF00149; PF00149; PF00149	Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase	IPR004843; IPR004843; IPR004843	Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type
hsd_id_Theobroma_cacao_2279	XP_007051440.1; XP_017972428.1	204; 200	Pfam	PF14009; PF14009	Domain of unknown function (DUF4228); Domain of unknown function (DUF4228)	IPR025322; IPR025322	Protein of unknown function DUF4228, plant; Protein of unknown function DUF4228, plant
hsd_id_Theobroma_cacao_2280	XP_007051457.2; XP_017972360.1	497; 473	Pfam	PF14215, PF00010; PF14215, PF00010	bHLH-MYC and R2R3-MYB transcription factors N-terminal, Helix-loop-helix DNA-binding domain; bHLH-MYC and R2R3-MYB transcription factors N-terminal, Helix-loop-helix DNA-binding domain	IPR025610, IPR011598; IPR025610, IPR011598	Transcription factor MYC/MYB N-terminal, Myc-type, basic helix-loop-helix (bHLH) domain; Transcription factor MYC/MYB N-terminal, Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_2281	XP_007051483.1; XP_017981159.1; XP_017977438.1; XP_017973908.1; XP_007041546.2	255; 310; 299; 253; 236	Pfam	PF00076; PF00076; PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_2282	XP_007051493.1; XP_017977291.1; XP_017975143.1; XP_017976730.1	258; 256; 272; 235	Pfam	PF04970; PF04970; PF04970; PF04970	Lecithin retinol acyltransferase; Lecithin retinol acyltransferase; Lecithin retinol acyltransferase; Lecithin retinol acyltransferase	IPR007053; IPR007053; IPR007053; IPR007053	LRAT domain; LRAT domain; LRAT domain; LRAT domain
hsd_id_Theobroma_cacao_2283	XP_007051494.2; XP_017972256.1	493; 496	Pfam	PF11744; PF11744	Aluminium activated malate transporter; Aluminium activated malate transporter	IPR020966; IPR020966	Aluminum-activated malate transporter; Aluminum-activated malate transporter
hsd_id_Theobroma_cacao_2284	XP_007051549.2; XP_017981114.1; XP_017972455.1	510; 498; 490	Pfam	PF06974, PF03007; PF06974, PF03007; PF03007, PF06974	WS/DGAT C-terminal domain, Wax ester synthase-like Acyl-CoA acyltransferase domain; WS/DGAT C-terminal domain, Wax ester synthase-like Acyl-CoA acyltransferase domain; Wax ester synthase-like Acyl-CoA acyltransferase domain, WS/DGAT C-terminal domain	IPR009721, IPR004255; IPR009721, IPR004255; IPR004255, IPR009721	O-acyltransferase WSD1, C-terminal, O-acyltransferase, WSD1, N-terminal; O-acyltransferase WSD1, C-terminal, O-acyltransferase, WSD1, N-terminal; O-acyltransferase, WSD1, N-terminal, O-acyltransferase WSD1, C-terminal
hsd_id_Theobroma_cacao_2285	XP_007051554.2; XP_017983272.1	1872; 1863	Pfam	PF13424, PF15044, PF12807; PF13424, PF12807, PF15044	Tetratricopeptide repeat, Mitochondrial function, CLU-N-term, Translation initiation factor eIF3 subunit 135; Tetratricopeptide repeat, Translation initiation factor eIF3 subunit 135, Mitochondrial function, CLU-N-term	-, IPR028275, IPR033646; -, IPR033646, IPR028275	-, Clustered mitochondria protein, N-terminal, CLU central domain; -, CLU central domain, Clustered mitochondria protein, N-terminal
hsd_id_Theobroma_cacao_2286	XP_007051597.2; XP_017982303.1	341; 336	Pfam	PF01370; PF01370	NAD dependent epimerase/dehydratase family; NAD dependent epimerase/dehydratase family	IPR001509; IPR001509	NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase
hsd_id_Theobroma_cacao_2287	XP_007051603.2; XP_017974059.1	449; 431	Pfam	PF14416, PF13839; PF13839, PF14416	PMR5 N terminal Domain, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p, PMR5 N terminal Domain	IPR025846, IPR026057; IPR026057, IPR025846	PMR5 N-terminal domain, PC-Esterase; PC-Esterase, PMR5 N-terminal domain
hsd_id_Theobroma_cacao_2288	XP_007051615.1; XP_017973141.1	354; 354	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_2289	XP_007051648.2; XP_017972823.1	552; 564	Pfam	PF00651, PF07707; PF00651, PF07707	BTB/POZ domain, BTB And C-terminal Kelch; BTB/POZ domain, BTB And C-terminal Kelch	IPR000210, IPR011705; IPR000210, IPR011705	BTB/POZ domain, BTB/Kelch-associated; BTB/POZ domain, BTB/Kelch-associated
hsd_id_Theobroma_cacao_2290	XP_007051671.1; XP_017972190.1	299; 330	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2291	XP_007051673.2; XP_017979557.1	255; 266	Pfam	PF10184; PF10184	Uncharacterized conserved protein (DUF2358); Uncharacterized conserved protein (DUF2358)	IPR018790; IPR018790	Protein of unknown function DUF2358; Protein of unknown function DUF2358
hsd_id_Theobroma_cacao_2292	XP_007051734.2; XP_017971771.1; XP_017976476.1	470; 473; 473	Pfam	PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_2293	XP_007051741.2; XP_017973089.1; XP_017972911.1	703; 748; 694	Pfam	PF08022, PF01794, PF08030; PF01794, PF08022, PF08030; PF08022, PF01794, PF08030	FAD-binding domain, Ferric reductase like transmembrane component, Ferric reductase NAD binding domain; Ferric reductase like transmembrane component, FAD-binding domain, Ferric reductase NAD binding domain; FAD-binding domain, Ferric reductase like transmembrane component, Ferric reductase NAD binding domain	IPR013112, IPR013130, IPR013121; IPR013130, IPR013112, IPR013121; IPR013112, IPR013130, IPR013121	FAD-binding 8, Ferric reductase transmembrane component-like domain, Ferric reductase, NAD binding domain; Ferric reductase transmembrane component-like domain, FAD-binding 8, Ferric reductase, NAD binding domain; FAD-binding 8, Ferric reductase transmembrane component-like domain, Ferric reductase, NAD binding domain
hsd_id_Theobroma_cacao_2294	XP_007051778.2; XP_017983608.1	601; 519	Pfam	PF07690; PF07690	Major Facilitator Superfamily; Major Facilitator Superfamily	IPR011701; IPR011701	Major facilitator superfamily; Major facilitator superfamily
hsd_id_Theobroma_cacao_2295	XP_007051855.2; XP_017973064.1	192; 199	Pfam	PF03763, PF03766; PF03766, PF03763	Remorin, C-terminal region, Remorin, N-terminal region; Remorin, N-terminal region, Remorin, C-terminal region	IPR005516, IPR005518; IPR005518, IPR005516	Remorin, C-terminal, Remorin, N-terminal; Remorin, N-terminal, Remorin, C-terminal
hsd_id_Theobroma_cacao_2296	XP_007051863.2; XP_017977126.1	734; 759	Pfam	PF03255; PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit	IPR001095; IPR001095	Acetyl-CoA carboxylase, alpha subunit; Acetyl-CoA carboxylase, alpha subunit
hsd_id_Theobroma_cacao_2297	XP_007051902.2; XP_017984791.1	188; 189	Pfam	PF03061; PF03061	Thioesterase superfamily; Thioesterase superfamily	IPR006683; IPR006683	Thioesterase domain; Thioesterase domain
hsd_id_Theobroma_cacao_2298	XP_007051954.1; XP_017971259.1	473; 484	Pfam	PF03124; PF03124	EXS family; EXS family	IPR004342; IPR004342	EXS, C-terminal; EXS, C-terminal
hsd_id_Theobroma_cacao_2299	XP_007051957.2; XP_017976703.1	115; 106	Pfam	PF01476; PF01476	LysM domain; LysM domain	IPR018392; IPR018392	LysM domain; LysM domain
hsd_id_Theobroma_cacao_2300	XP_007051964.2; XP_017973008.1	354; 349	Pfam	PF03634; PF03634	TCP family transcription factor; TCP family transcription factor	IPR017887; IPR017887	Transcription factor TCP subgroup; Transcription factor TCP subgroup
hsd_id_Theobroma_cacao_2301	XP_007051969.2; XP_017969733.1; XP_017969664.1; XP_017976584.1	773; 768; 773; 771	Pfam	PF02225, PF05922, PF17766, PF00082; PF02225, PF05922, PF17766, PF00082; PF02225, PF00082, PF17766, PF05922; PF02225, PF17766, PF05922, PF00082	PA domain, Peptidase inhibitor I9, Fibronectin type-III domain, Subtilase family; PA domain, Peptidase inhibitor I9, Fibronectin type-III domain, Subtilase family; PA domain, Subtilase family, Fibronectin type-III domain, Peptidase inhibitor I9; PA domain, Fibronectin type-III domain, Peptidase inhibitor I9, Subtilase family	IPR003137, IPR010259, IPR041469, IPR000209; IPR003137, IPR010259, IPR041469, IPR000209; IPR003137, IPR000209, IPR041469, IPR010259; IPR003137, IPR041469, IPR010259, IPR000209	PA domain, Peptidase S8 propeptide/proteinase inhibitor I9, Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain; PA domain, Peptidase S8 propeptide/proteinase inhibitor I9, Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain; PA domain, Peptidase S8/S53 domain, Subtilisin-like protease, fibronectin type-III domain, Peptidase S8 propeptide/proteinase inhibitor I9; PA domain, Subtilisin-like protease, fibronectin type-III domain, Peptidase S8 propeptide/proteinase inhibitor I9, Peptidase S8/S53 domain
hsd_id_Theobroma_cacao_2302	XP_007051974.2; XP_017980737.1	400; 357	Pfam	PF01985; PF01985	CRS1 / YhbY (CRM) domain; CRS1 / YhbY (CRM) domain	IPR001890; IPR001890	RNA-binding, CRM domain; RNA-binding, CRM domain
hsd_id_Theobroma_cacao_2303	XP_007052008.2; XP_017978005.1; XP_017975798.1; XP_017972938.1	514; 524; 426; 422	Pfam	PF00067; PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_2304	XP_007052030.2; XP_017973715.1	902; 917	Pfam	PF00514, PF00225; PF00225, PF00514	Armadillo/beta-catenin-like repeat, Kinesin motor domain; Kinesin motor domain, Armadillo/beta-catenin-like repeat	IPR000225, IPR001752; IPR001752, IPR000225	Armadillo, Kinesin motor domain; Kinesin motor domain, Armadillo
hsd_id_Theobroma_cacao_2305	XP_007052060.2; XP_017977477.1; XP_017973902.1	328; 328; 328	Pfam	PF01370; PF01370; PF01370	NAD dependent epimerase/dehydratase family; NAD dependent epimerase/dehydratase family; NAD dependent epimerase/dehydratase family	IPR001509; IPR001509; IPR001509	NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase
hsd_id_Theobroma_cacao_2306	XP_007052257.2; XP_017984446.1; XP_007052259.2; XP_017974001.1; XP_017973992.1; XP_017970136.1; XP_007052266.2; XP_017970391.1; XP_017973997.1; XP_017969763.1; XP_017973973.1; XP_017984430.1; XP_017984421.1	359; 413; 429; 335; 408; 425; 434; 442; 371; 419; 334; 485; 490	Pfam	PF03140; PF03140; PF03140; PF03140; PF03140; PF03140; PF03140; PF03140; PF03140; PF03140; PF03140; PF03140; PF03140	Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function	IPR004158; IPR004158; IPR004158; IPR004158; IPR004158; IPR004158; IPR004158; IPR004158; IPR004158; IPR004158; IPR004158; IPR004158; IPR004158	Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant
hsd_id_Theobroma_cacao_2307	XP_007052276.2; XP_007039765.2; XP_017976523.1	287; 223; 191	Pfam	PF07797; PF07797; PF07797	Protein of unknown function (DUF1639); Protein of unknown function (DUF1639); Protein of unknown function (DUF1639)	IPR012438; IPR012438; IPR012438	Protein of unknown function DUF1639; Protein of unknown function DUF1639; Protein of unknown function DUF1639
hsd_id_Theobroma_cacao_2308	XP_007052313.2; XP_017983187.1; XP_017978867.1; XP_017981955.1	823; 741; 736; 751	Pfam	PF04782, PF04783; PF04783, PF04782; PF04782, PF04783; PF04782, PF04783	Protein of unknown function (DUF632), Protein of unknown function (DUF630); Protein of unknown function (DUF630), Protein of unknown function (DUF632); Protein of unknown function (DUF632), Protein of unknown function (DUF630); Protein of unknown function (DUF632), Protein of unknown function (DUF630)	IPR006867, IPR006868; IPR006868, IPR006867; IPR006867, IPR006868; IPR006867, IPR006868	Domain of unknown function DUF632, Domain of unknown function DUF630; Domain of unknown function DUF630, Domain of unknown function DUF632; Domain of unknown function DUF632, Domain of unknown function DUF630; Domain of unknown function DUF632, Domain of unknown function DUF630
hsd_id_Theobroma_cacao_2309	XP_007052318.2; XP_017976430.1	436; 449	Pfam	PF01764; PF01764	Lipase (class 3); Lipase (class 3)	IPR002921; IPR002921	Fungal lipase-like domain; Fungal lipase-like domain
hsd_id_Theobroma_cacao_2310	XP_007052364.2; XP_007052372.1; XP_017977076.1; XP_017971927.1; XP_017974064.1; XP_007052374.2; XP_017974054.1; XP_017977085.1; XP_017977093.1; XP_017974046.1; XP_017974074.1	192; 192; 192; 210; 218; 192; 157; 159; 157; 260; 285	Pfam	PF13962; PF13962; PF13962; PF13962; PF13962; PF13962; PF13962; PF13962; PF13962; PF13962; PF13962	Domain of unknown function; Domain of unknown function; Domain of unknown function; Domain of unknown function; Domain of unknown function; Domain of unknown function; Domain of unknown function; Domain of unknown function; Domain of unknown function; Domain of unknown function; Domain of unknown function	IPR026961; IPR026961; IPR026961; IPR026961; IPR026961; IPR026961; IPR026961; IPR026961; IPR026961; IPR026961; IPR026961	PGG domain; PGG domain; PGG domain; PGG domain; PGG domain; PGG domain; PGG domain; PGG domain; PGG domain; PGG domain; PGG domain
hsd_id_Theobroma_cacao_2311	XP_007052379.1; XP_017972171.1	376; 438	Pfam	PF13837; PF13837	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR044822; IPR044822	Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4
hsd_id_Theobroma_cacao_2312	XP_007052384.2; XP_007052385.2	351; 359	Pfam	PF03407; PF03407	Nucleotide-diphospho-sugar transferase; Nucleotide-diphospho-sugar transferase	IPR005069; IPR005069	Nucleotide-diphospho-sugar transferase; Nucleotide-diphospho-sugar transferase
hsd_id_Theobroma_cacao_2313	XP_007052416.1; XP_017982909.1	208; 208	Pfam	PF00071; PF00071	Ras family; Ras family	IPR001806; IPR001806	Small GTPase; Small GTPase
hsd_id_Theobroma_cacao_2314	XP_007052424.2; XP_017975207.1	854; 847	Pfam	PF00999; PF00999	Sodium/hydrogen exchanger family; Sodium/hydrogen exchanger family	IPR006153; IPR006153	Cation/H+ exchanger; Cation/H+ exchanger
hsd_id_Theobroma_cacao_2315	XP_007052432.2; XP_017981844.1	478; 503	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2316	XP_007052510.2; XP_017982826.1	106; 107	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2317	XP_007052598.1; XP_017972241.1	551; 558	Pfam	PF10250; PF10250	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase	IPR019378; IPR019378	GDP-fucose protein O-fucosyltransferase; GDP-fucose protein O-fucosyltransferase
hsd_id_Theobroma_cacao_2318	XP_007099644.2; XP_017978242.1	357; 359	Pfam	PF07734, PF00646; PF07734, PF00646	F-box associated, F-box domain; F-box associated, F-box domain	IPR006527, IPR001810; IPR006527, IPR001810	F-box associated domain, type 1, F-box domain; F-box associated domain, type 1, F-box domain
hsd_id_Theobroma_cacao_2319	XP_017974116.1; XP_007099666.2; XP_017974583.1; XP_017974582.1	372; 372; 376; 376	Pfam	PF00646, PF07734; PF00646, PF07734; PF00646, PF07734; PF00646, PF07734	F-box domain, F-box associated; F-box domain, F-box associated; F-box domain, F-box associated; F-box domain, F-box associated	IPR001810, IPR006527; IPR001810, IPR006527; IPR001810, IPR006527; IPR001810, IPR006527	F-box domain, F-box associated domain, type 1; F-box domain, F-box associated domain, type 1; F-box domain, F-box associated domain, type 1; F-box domain, F-box associated domain, type 1
hsd_id_Theobroma_cacao_2320	XP_007099708.1; XP_017974359.1	528; 544	Pfam	PF13360; PF13360	PQQ-like domain; PQQ-like domain	IPR002372; IPR002372	Pyrrolo-quinoline quinone repeat; Pyrrolo-quinoline quinone repeat
hsd_id_Theobroma_cacao_2321	XP_007099736.2; XP_017974397.1	264; 261	Pfam	PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_2322	XP_017969348.1; XP_017975812.1	507; 500	Pfam	PF00295; PF00295	Glycosyl hydrolases family 28; Glycosyl hydrolases family 28	IPR000743; IPR000743	Glycoside hydrolase, family 28; Glycoside hydrolase, family 28
hsd_id_Theobroma_cacao_2323	XP_017969355.1; XP_017970723.1	728; 725	Pfam	PF04791; PF04791	LMBR1-like membrane protein; LMBR1-like membrane protein	IPR006876; IPR006876	LMBR1-like membrane protein; LMBR1-like membrane protein
hsd_id_Theobroma_cacao_2324	XP_017969392.1; XP_017981202.1	575; 517	Pfam	PF00083; PF00083	Sugar (and other) transporter; Sugar (and other) transporter	IPR005828; IPR005828	Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like
hsd_id_Theobroma_cacao_2325	XP_017969434.1; XP_017970571.1	474; 534	Pfam	PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_2326	XP_017969444.1; XP_017974819.1; XP_017970586.1	45; 48; 46	Pfam	PF08137; PF08137; PF08137	DVL family; DVL family; DVL family	IPR012552; IPR012552; IPR012552	DVL; DVL; DVL
hsd_id_Theobroma_cacao_2327	XP_017969446.1; XP_017970251.1	566; 613	Pfam	PF13450; PF13450	NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain	-; -	-; -
hsd_id_Theobroma_cacao_2328	XP_017969487.1; XP_017976800.1	830; 844	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2329	XP_017969491.1; XP_017972179.1; XP_017977761.1; XP_017983906.1; XP_017985149.1; XP_017970135.1; XP_017969381.1; XP_007016607.2; XP_007026974.2; XP_017979559.1; XP_017983905.1; XP_007026973.2; XP_017976089.1; XP_017976377.1; XP_017982713.1; XP_007026983.2; XP_007008849.2; XP_017983856.1; XP_017976218.1; XP_017977839.1	575; 584; 556; 557; 554; 562; 562; 581; 583; 577; 577; 583; 583; 562; 585; 577; 573; 576; 567; 568	Pfam	PF07732, PF07731, PF00394; PF07732, PF07731, PF00394; PF00394, PF07731, PF07732; PF07731, PF07732, PF00394; PF07731, PF00394, PF07732; PF07731, PF07732, PF00394; PF07732, PF00394, PF07731; PF07732, PF07731, PF00394; PF07731, PF07732, PF00394; PF00394, PF07732, PF07731; PF07731, PF07732, PF00394; PF07732, PF07731, PF00394; PF00394, PF07731, PF07732; PF07732, PF07731, PF00394; PF07732, PF00394, PF07731; PF07731, PF00394, PF07732; PF07732, PF00394, PF07731; PF00394, PF07731, PF07732; PF07731, PF00394, PF07732; PF07731, PF07732, PF00394	Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase; Multicopper oxidase, Multicopper oxidase, Multicopper oxidase	IPR011707, IPR011706, IPR001117; IPR011707, IPR011706, IPR001117; IPR001117, IPR011706, IPR011707; IPR011706, IPR011707, IPR001117; IPR011706, IPR001117, IPR011707; IPR011706, IPR011707, IPR001117; IPR011707, IPR001117, IPR011706; IPR011707, IPR011706, IPR001117; IPR011706, IPR011707, IPR001117; IPR001117, IPR011707, IPR011706; IPR011706, IPR011707, IPR001117; IPR011707, IPR011706, IPR001117; IPR001117, IPR011706, IPR011707; IPR011707, IPR011706, IPR001117; IPR011707, IPR001117, IPR011706; IPR011706, IPR001117, IPR011707; IPR011707, IPR001117, IPR011706; IPR001117, IPR011706, IPR011707; IPR011706, IPR001117, IPR011707; IPR011706, IPR011707, IPR001117	Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal, Multicopper oxidase, type 1; Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal, Multicopper oxidase, type 1; Multicopper oxidase, type 1, Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl; Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl, Multicopper oxidase, type 1; Multicopper oxidase, C-terminal, Multicopper oxidase, type 1, Multicopper oxidase, N-termianl; Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl, Multicopper oxidase, type 1; Multicopper oxidase, N-termianl, Multicopper oxidase, type 1, Multicopper oxidase, C-terminal; Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal, Multicopper oxidase, type 1; Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl, Multicopper oxidase, type 1; Multicopper oxidase, type 1, Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal; Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl, Multicopper oxidase, type 1; Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal, Multicopper oxidase, type 1; Multicopper oxidase, type 1, Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl; Multicopper oxidase, N-termianl, Multicopper oxidase, C-terminal, Multicopper oxidase, type 1; Multicopper oxidase, N-termianl, Multicopper oxidase, type 1, Multicopper oxidase, C-terminal; Multicopper oxidase, C-terminal, Multicopper oxidase, type 1, Multicopper oxidase, N-termianl; Multicopper oxidase, N-termianl, Multicopper oxidase, type 1, Multicopper oxidase, C-terminal; Multicopper oxidase, type 1, Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl; Multicopper oxidase, C-terminal, Multicopper oxidase, type 1, Multicopper oxidase, N-termianl; Multicopper oxidase, C-terminal, Multicopper oxidase, N-termianl, Multicopper oxidase, type 1
hsd_id_Theobroma_cacao_2330	XP_017969492.1; XP_017974921.1	161; 160	Pfam	PF00582; PF00582	Universal stress protein family; Universal stress protein family	IPR006016; IPR006016	UspA; UspA
hsd_id_Theobroma_cacao_2331	XP_017969520.1; XP_017970058.1	650; 664	Pfam	PF00514; PF00514	Armadillo/beta-catenin-like repeat; Armadillo/beta-catenin-like repeat	IPR000225; IPR000225	Armadillo; Armadillo
hsd_id_Theobroma_cacao_2332	XP_017969544.1; XP_017973533.1	628; 678	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2333	XP_017969581.1; XP_017973005.1	380; 358	Pfam	PF01466, PF03931; PF03931, PF01466	Skp1 family, dimerisation domain, Skp1 family, tetramerisation domain; Skp1 family, tetramerisation domain, Skp1 family, dimerisation domain	IPR016072, IPR016073; IPR016073, IPR016072	SKP1 component, dimerisation, SKP1 component, POZ domain; SKP1 component, POZ domain, SKP1 component, dimerisation
hsd_id_Theobroma_cacao_2334	XP_017969620.1; XP_017976710.1	362; 362	Pfam	PF00892; PF00892	EamA-like transporter family; EamA-like transporter family	IPR000620; IPR000620	EamA domain; EamA domain
hsd_id_Theobroma_cacao_2335	XP_017969622.1; XP_017974352.1; XP_017975225.1; XP_017975801.1	547; 544; 536; 573	Pfam	PF14008, PF16656, PF00149; PF00149, PF16656, PF14008; PF16656, PF00149, PF14008; PF14008, PF00149, PF16656	Iron/zinc purple acid phosphatase-like protein C, Purple acid Phosphatase, N-terminal domain, Calcineurin-like phosphoesterase; Calcineurin-like phosphoesterase, Purple acid Phosphatase, N-terminal domain, Iron/zinc purple acid phosphatase-like protein C; Purple acid Phosphatase, N-terminal domain, Calcineurin-like phosphoesterase, Iron/zinc purple acid phosphatase-like protein C; Iron/zinc purple acid phosphatase-like protein C, Calcineurin-like phosphoesterase, Purple acid Phosphatase, N-terminal domain	IPR025733, IPR015914, IPR004843; IPR004843, IPR015914, IPR025733; IPR015914, IPR004843, IPR025733; IPR025733, IPR004843, IPR015914	Iron/zinc purple acid phosphatase-like C-terminal domain, Purple acid phosphatase, N-terminal, Calcineurin-like phosphoesterase domain, ApaH type; Calcineurin-like phosphoesterase domain, ApaH type, Purple acid phosphatase, N-terminal, Iron/zinc purple acid phosphatase-like C-terminal domain; Purple acid phosphatase, N-terminal, Calcineurin-like phosphoesterase domain, ApaH type, Iron/zinc purple acid phosphatase-like C-terminal domain; Iron/zinc purple acid phosphatase-like C-terminal domain, Calcineurin-like phosphoesterase domain, ApaH type, Purple acid phosphatase, N-terminal
hsd_id_Theobroma_cacao_2336	XP_017969631.1; XP_017973586.1	421; 426	Pfam	PF02362; PF02362	B3 DNA binding domain; B3 DNA binding domain	IPR003340; IPR003340	B3 DNA binding domain; B3 DNA binding domain
hsd_id_Theobroma_cacao_2337	XP_017969638.1; XP_017972614.1	135; 130	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2338	XP_017969642.1; XP_017984557.1	367; 338	Pfam	PF08711; PF08711	TFIIS helical bundle-like domain; TFIIS helical bundle-like domain	IPR017923; IPR017923	Transcription factor IIS, N-terminal; Transcription factor IIS, N-terminal
hsd_id_Theobroma_cacao_2339	XP_017969701.1; XP_017973964.1	356; 352	Pfam	PF08449; PF08449	UAA transporter family; UAA transporter family	IPR013657; IPR013657	UAA transporter; UAA transporter
hsd_id_Theobroma_cacao_2340	XP_017969743.1; XP_017981811.1	675; 714	Pfam	PF05911; PF05911	Filament-like plant protein, long coiled-coil; Filament-like plant protein, long coiled-coil	IPR008587; IPR008587	Filament-like plant protein; Filament-like plant protein
hsd_id_Theobroma_cacao_2341	XP_017969755.1; XP_017975733.1; XP_017979505.1	575; 575; 572	Pfam	PF00118; PF00118; PF00118	TCP-1/cpn60 chaperonin family; TCP-1/cpn60 chaperonin family; TCP-1/cpn60 chaperonin family	IPR002423; IPR002423; IPR002423	Chaperonin Cpn60/TCP-1 family; Chaperonin Cpn60/TCP-1 family; Chaperonin Cpn60/TCP-1 family
hsd_id_Theobroma_cacao_2342	XP_017969756.1; XP_017979012.1	383; 391	Pfam	PF06454; PF06454	Protein of unknown function (DUF1084); Protein of unknown function (DUF1084)	IPR009457; IPR009457	THH1/TOM1/TOM3 domain; THH1/TOM1/TOM3 domain
hsd_id_Theobroma_cacao_2343	XP_017969789.1; XP_017979534.1	375; 331	Pfam	PF07859; PF07859	alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR013094; IPR013094	Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3
hsd_id_Theobroma_cacao_2344	XP_017969836.1; XP_017973914.1	284; 310	Pfam	PF09335; PF09335	SNARE associated Golgi protein; SNARE associated Golgi protein	IPR032816; IPR032816	SNARE associated Golgi protein; SNARE associated Golgi protein
hsd_id_Theobroma_cacao_2345	XP_017969854.1; XP_017972904.1	716; 727	Pfam	PF03999; PF03999	Microtubule associated protein (MAP65/ASE1 family); Microtubule associated protein (MAP65/ASE1 family)	-; -	-; -
hsd_id_Theobroma_cacao_2346	XP_017969861.1; XP_017976654.1	483; 471	Pfam	PF03141; PF03141	Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159; IPR004159	Putative S-adenosyl-L-methionine-dependent methyltransferase; Putative S-adenosyl-L-methionine-dependent methyltransferase
hsd_id_Theobroma_cacao_2347	XP_017969870.1; XP_017972917.1	652; 680	Pfam	PF07714, PF00069; PF00069, PF07714	Protein tyrosine and serine/threonine kinase, Protein kinase domain; Protein kinase domain, Protein tyrosine and serine/threonine kinase	IPR001245, IPR000719; IPR000719, IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain, Protein kinase domain; Protein kinase domain, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2348	XP_017969915.1; XP_017973236.1	453; 484	Pfam	PF03143, PF03144, PF00009; PF03144, PF00009, PF03143	Elongation factor Tu C-terminal domain, Elongation factor Tu domain 2, Elongation factor Tu GTP binding domain; Elongation factor Tu domain 2, Elongation factor Tu GTP binding domain, Elongation factor Tu C-terminal domain	IPR004160, IPR004161, IPR000795; IPR004161, IPR000795, IPR004160	Translation elongation factor EFTu/EF1A, C-terminal, Translation elongation factor EFTu-like, domain 2, Translational (tr)-type GTP-binding domain; Translation elongation factor EFTu-like, domain 2, Translational (tr)-type GTP-binding domain, Translation elongation factor EFTu/EF1A, C-terminal
hsd_id_Theobroma_cacao_2349	XP_017969931.1; XP_017978072.1	269; 278	Pfam	PF03106; PF03106	WRKY DNA -binding domain; WRKY DNA -binding domain	IPR003657; IPR003657	WRKY domain; WRKY domain
hsd_id_Theobroma_cacao_2350	XP_017969935.1; XP_017982879.1	589; 631	Pfam	PF01019; PF01019	Gamma-glutamyltranspeptidase; Gamma-glutamyltranspeptidase	-; -	-; -
hsd_id_Theobroma_cacao_2351	XP_017969948.1; XP_017971482.1; XP_017971481.1	253; 270; 277	Pfam	PF04199; PF04199; PF04199	Putative cyclase; Putative cyclase; Putative cyclase	IPR007325; IPR007325; IPR007325	Kynurenine formamidase/cyclase-like; Kynurenine formamidase/cyclase-like; Kynurenine formamidase/cyclase-like
hsd_id_Theobroma_cacao_2352	XP_017969950.1; XP_017980949.1	121; 129	Pfam	PF08041; PF08041	PetM family of cytochrome b6f complex subunit 7; PetM family of cytochrome b6f complex subunit 7	IPR012595; IPR012595	PetM of cytochrome b6/f complex subunit 7; PetM of cytochrome b6/f complex subunit 7
hsd_id_Theobroma_cacao_2353	XP_017969960.1; XP_017974546.1; XP_017970371.1	390; 349; 488	Pfam	PF10536; PF10536; PF10536	Plant mobile domain; Plant mobile domain; Plant mobile domain	IPR019557; IPR019557; IPR019557	Aminotransferase-like, plant mobile domain; Aminotransferase-like, plant mobile domain; Aminotransferase-like, plant mobile domain
hsd_id_Theobroma_cacao_2354	XP_017969961.1; XP_017971769.1	100; 144	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2355	XP_017969976.1; XP_017973751.1	609; 609	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_2356	XP_017969986.1; XP_017971878.1; XP_017970133.1; XP_017979997.1	418; 418; 402; 416	Pfam	PF00155; PF00155; PF00155; PF00155	Aminotransferase class I and II; Aminotransferase class I and II; Aminotransferase class I and II; Aminotransferase class I and II	IPR004839; IPR004839; IPR004839; IPR004839	Aminotransferase, class I/classII; Aminotransferase, class I/classII; Aminotransferase, class I/classII; Aminotransferase, class I/classII
hsd_id_Theobroma_cacao_2357	XP_017969992.1; XP_017982613.1	216; 166	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2358	XP_017970011.1; XP_017970336.1	313; 240	Pfam	PF02362; PF02362	B3 DNA binding domain; B3 DNA binding domain	IPR003340; IPR003340	B3 DNA binding domain; B3 DNA binding domain
hsd_id_Theobroma_cacao_2359	XP_017970016.1; XP_017981971.1	113; 71	Pfam	PF01194; PF01194	RNA polymerases N / 8 kDa subunit; RNA polymerases N / 8 kDa subunit	IPR000268; IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10; DNA-directed RNA polymerase, subunit N/Rpb10
hsd_id_Theobroma_cacao_2360	XP_017970037.1; XP_017980905.1	633; 650	Pfam	PF00514, PF04564; PF00514, PF04564	Armadillo/beta-catenin-like repeat, U-box domain; Armadillo/beta-catenin-like repeat, U-box domain	IPR000225, IPR003613; IPR000225, IPR003613	Armadillo, U box domain; Armadillo, U box domain
hsd_id_Theobroma_cacao_2361	XP_017970061.1; XP_017978772.1; XP_017970096.1	144; 147; 140	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2362	XP_017970067.1; XP_017975957.1	850; 762	Pfam	PF07891; PF07891	Protein of unknown function (DUF1666); Protein of unknown function (DUF1666)	IPR012870; IPR012870	Protein of unknown function DUF1666; Protein of unknown function DUF1666
hsd_id_Theobroma_cacao_2363	XP_017970086.1; XP_017972375.1	90; 110	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2364	XP_017970090.1; XP_017980547.1	97; 102	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2365	XP_017970092.1; XP_017971994.1; XP_017970311.1	460; 459; 393	Pfam	PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_2366	XP_017970108.1; XP_017984332.1	373; 390	Pfam	PF05055; PF05055	Protein of unknown function (DUF677); Protein of unknown function (DUF677)	IPR007749; IPR007749	Protein of unknown function DUF677; Protein of unknown function DUF677
hsd_id_Theobroma_cacao_2367	XP_017970110.1; XP_017981825.1; XP_017971848.1	41; 41; 41	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2368	XP_017970132.1; XP_017970688.1	354; 345	Pfam	PF03088; PF03088	Strictosidine synthase; Strictosidine synthase	IPR018119; IPR018119	Strictosidine synthase, conserved region; Strictosidine synthase, conserved region
hsd_id_Theobroma_cacao_2369	XP_017970154.1; XP_017971793.1; XP_017980093.1; XP_017979888.1; XP_017975932.1; XP_017970506.1	846; 790; 768; 761; 786; 808	Pfam	PF03105, PF03124; PF03124, PF03105; PF03105, PF03124; PF03124, PF03105; PF03124, PF03105; PF03105, PF03124	SPX domain, EXS family; EXS family, SPX domain; SPX domain, EXS family; EXS family, SPX domain; EXS family, SPX domain; SPX domain, EXS family	IPR004331, IPR004342; IPR004342, IPR004331; IPR004331, IPR004342; IPR004342, IPR004331; IPR004342, IPR004331; IPR004331, IPR004342	SPX domain, EXS, C-terminal; EXS, C-terminal, SPX domain; SPX domain, EXS, C-terminal; EXS, C-terminal, SPX domain; EXS, C-terminal, SPX domain; SPX domain, EXS, C-terminal
hsd_id_Theobroma_cacao_2370	XP_017970174.1; XP_017972513.1; XP_017982363.1; XP_017970176.1; XP_017979570.1	167; 158; 212; 110; 148	Pfam	; ; ; ; 	; ; ; ; 	; ; ; ; 	; ; ; ; 
hsd_id_Theobroma_cacao_2371	XP_017970183.1; XP_017984968.1; XP_017971939.1	483; 486; 475	Pfam	PF00201; PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_2372	XP_017970195.1; XP_017976250.1; XP_017984165.1; XP_017982160.1; XP_017982163.1; XP_017982170.1; XP_017976268.1; XP_017984170.1; XP_017970212.1	467; 467; 467; 467; 467; 467; 467; 467; 467	Pfam	PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF03732, PF00098; PF00098, PF03732	Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Retrotransposon gag protein, Zinc knuckle; Zinc knuckle, Retrotransposon gag protein	IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR005162, IPR001878; IPR001878, IPR005162	Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Retrotransposon gag domain, Zinc finger, CCHC-type; Zinc finger, CCHC-type, Retrotransposon gag domain
hsd_id_Theobroma_cacao_2373	XP_017970227.1; XP_017980068.1	147; 132	Pfam	PF07802; PF07802	GCK domain; GCK domain	IPR012891; IPR012891	GCK; GCK
hsd_id_Theobroma_cacao_2374	XP_017970240.1; XP_017981430.1	317; 335	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2375	XP_017970272.1; XP_017982213.1; XP_017982220.1; XP_017971646.1	453; 453; 453; 453	Pfam	PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732	Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein	IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162	Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain
hsd_id_Theobroma_cacao_2376	XP_017970284.1; XP_017978041.1	309; 349	Pfam	PF13837; PF13837	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR044822; IPR044822	Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4
hsd_id_Theobroma_cacao_2377	XP_017970307.1; XP_017974435.1; XP_017976405.1; XP_017970332.1	178; 131; 202; 168	Pfam	PF07727; PF07727; PF07727; PF07727	Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase)	IPR013103; IPR013103; IPR013103; IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase
hsd_id_Theobroma_cacao_2378	XP_017970308.1; XP_017970309.1	625; 680	Pfam	PF00514; PF00514	Armadillo/beta-catenin-like repeat; Armadillo/beta-catenin-like repeat	IPR000225; IPR000225	Armadillo; Armadillo
hsd_id_Theobroma_cacao_2379	XP_017970310.1; XP_017981880.1; XP_017985332.1; XP_017985255.1	224; 227; 224; 143	Pfam	PF04117; PF04117; PF04117; PF04117	Mpv17 / PMP22 family; Mpv17 / PMP22 family; Mpv17 / PMP22 family; Mpv17 / PMP22 family	IPR007248; IPR007248; IPR007248; IPR007248	Mpv17/PMP22; Mpv17/PMP22; Mpv17/PMP22; Mpv17/PMP22
hsd_id_Theobroma_cacao_2380	XP_017970340.1; XP_017974463.1	307; 314	Pfam	PF10551, PF03101; PF03101, PF10551	MULE transposase domain, FAR1 DNA-binding domain; FAR1 DNA-binding domain, MULE transposase domain	IPR018289, IPR004330; IPR004330, IPR018289	MULE transposase domain, FAR1 DNA binding domain; FAR1 DNA binding domain, MULE transposase domain
hsd_id_Theobroma_cacao_2381	XP_017970384.1; XP_017981016.1; XP_017970459.1	214; 312; 223	Pfam	PF13359; PF13359; PF13359	DDE superfamily endonuclease; DDE superfamily endonuclease; DDE superfamily endonuclease	IPR027806; IPR027806; IPR027806	Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain
hsd_id_Theobroma_cacao_2382	XP_017970386.1; XP_017976459.1	345; 355	Pfam	PF03732; PF03732	Retrotransposon gag protein; Retrotransposon gag protein	IPR005162; IPR005162	Retrotransposon gag domain; Retrotransposon gag domain
hsd_id_Theobroma_cacao_2383	XP_017970392.1; XP_017976398.1; XP_017972520.1; XP_017976478.1	119; 119; 119; 119	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_2384	XP_017970399.1; XP_017973578.1; XP_017978281.1; XP_017979788.1; XP_017980998.1; XP_017972474.1; XP_017980993.1	165; 187; 169; 136; 139; 145; 161	Pfam	; ; ; ; ; ; 	; ; ; ; ; ; 	; ; ; ; ; ; 	; ; ; ; ; ; 
hsd_id_Theobroma_cacao_2385	XP_017970416.1; XP_017974468.1; XP_017972494.1; XP_017984337.1; XP_017972512.1; XP_017985257.1; XP_017970420.1; XP_017970423.1; XP_017979886.1; XP_017970421.1; XP_017973122.1; XP_017972551.1; XP_017973047.1; XP_017972542.1; XP_017978291.1; XP_017984316.1; XP_017973063.1; XP_017976438.1; XP_017985366.1	125; 125; 125; 125; 125; 125; 125; 125; 125; 125; 125; 125; 127; 132; 118; 118; 109; 113; 106	Pfam	; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; 
hsd_id_Theobroma_cacao_2386	XP_017970417.1; YP_004021302.1	410; 506	Pfam	PF02874, PF00006, PF00306; PF02874, PF00306, PF00006	ATP synthase alpha/beta family, beta-barrel domain, ATP synthase alpha/beta family, nucleotide-binding domain, ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, beta-barrel domain, ATP synthase alpha/beta chain, C terminal domain, ATP synthase alpha/beta family, nucleotide-binding domain	IPR004100, IPR000194, IPR000793; IPR004100, IPR000793, IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain, ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, ATP synthase, alpha subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain, ATP synthase, alpha subunit, C-terminal, ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain
hsd_id_Theobroma_cacao_2387	XP_017970419.1; XP_017981000.1	124; 114	Pfam	PF17921; PF17921	Integrase zinc binding domain; Integrase zinc binding domain	IPR041588; IPR041588	Integrase zinc-binding domain; Integrase zinc-binding domain
hsd_id_Theobroma_cacao_2388	XP_017970429.1; XP_017985342.1	173; 228	Pfam	PF14223; PF14223	gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type	-; -	-; -
hsd_id_Theobroma_cacao_2389	XP_017970431.1; XP_017972836.1	342; 349	Pfam	PF13963; PF13963	Transposase-associated domain; Transposase-associated domain	IPR029480; IPR029480	Transposase-associated domain; Transposase-associated domain
hsd_id_Theobroma_cacao_2390	XP_017970432.1; XP_017972540.1; XP_017970444.1; XP_017982348.1	166; 166; 163; 173	Pfam	PF14223; PF14223; PF14223; PF14223	gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type	-; -; -; -	-; -; -; -
hsd_id_Theobroma_cacao_2391	XP_017970435.1; XP_017982370.1	202; 120	Pfam	PF07727; PF07727	Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase)	IPR013103; IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase
hsd_id_Theobroma_cacao_2392	XP_017970436.1; XP_017984407.1	293; 285	Pfam	PF05699; PF05699	hAT family C-terminal dimerisation region; hAT family C-terminal dimerisation region	IPR008906; IPR008906	HAT, C-terminal dimerisation domain; HAT, C-terminal dimerisation domain
hsd_id_Theobroma_cacao_2393	XP_017970448.1; XP_017982671.1	124; 125	Pfam	PF00078; PF00078	Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase)	IPR000477; IPR000477	Reverse transcriptase domain; Reverse transcriptase domain
hsd_id_Theobroma_cacao_2394	XP_017970452.1; XP_017974459.1	285; 275	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2395	XP_017970461.1; XP_017970482.1	138; 186	Pfam	PF17919; PF17919	RNase H-like domain found in reverse transcriptase; RNase H-like domain found in reverse transcriptase	IPR041577; IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain; Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
hsd_id_Theobroma_cacao_2396	XP_017970477.1; XP_017971690.1	984; 987	Pfam	PF13855, PF00560, PF08263; PF00560, PF13855, PF08263	Leucine rich repeat, Leucine Rich Repeat, Leucine rich repeat N-terminal domain; Leucine Rich Repeat, Leucine rich repeat, Leucine rich repeat N-terminal domain	IPR001611, IPR001611, IPR013210; IPR001611, IPR001611, IPR013210	Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type
hsd_id_Theobroma_cacao_2397	XP_017970481.1; XP_017985271.1; XP_017975722.1	133; 158; 146	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2398	XP_017970509.1; XP_017978271.1; XP_017972852.1; XP_017978531.1; XP_017970968.1; XP_017970487.1; XP_017976836.1	222; 218; 231; 215; 227; 230; 209	Pfam	PF13639; PF13639; PF13639; PF13639; PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841; IPR001841; IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2399	XP_017970516.1; XP_017975295.1	1446; 1386	Pfam	PF02671, PF16879, PF08295; PF08295, PF02671, PF16879	Paired amphipathic helix repeat, C-terminal domain of Sin3a protein, Sin3 family co-repressor; Sin3 family co-repressor, Paired amphipathic helix repeat, C-terminal domain of Sin3a protein	IPR003822, IPR031693, IPR013194; IPR013194, IPR003822, IPR031693	Paired amphipathic helix, Sin3, C-terminal, Histone deacetylase interacting domain; Histone deacetylase interacting domain, Paired amphipathic helix, Sin3, C-terminal
hsd_id_Theobroma_cacao_2400	XP_017970517.1; XP_017973817.1	819; 796	Pfam	PF02181; PF02181	Formin Homology 2 Domain; Formin Homology 2 Domain	IPR015425; IPR015425	Formin, FH2 domain; Formin, FH2 domain
hsd_id_Theobroma_cacao_2401	XP_017970585.1; XP_017983346.1; XP_017983671.1	365; 361; 374	Pfam	PF00642; PF00642; PF00642	Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar)	IPR000571; IPR000571; IPR000571	Zinc finger, CCCH-type; Zinc finger, CCCH-type; Zinc finger, CCCH-type
hsd_id_Theobroma_cacao_2402	XP_017970598.1; XP_017970674.1	470; 413	Pfam	PF04577; PF04577	Protein of unknown function (DUF563); Protein of unknown function (DUF563)	IPR007657; IPR007657	Glycosyltransferase 61; Glycosyltransferase 61
hsd_id_Theobroma_cacao_2403	XP_017970609.1; XP_017975009.1; XP_017975355.1; XP_007032808.2; XP_017974756.1; XP_017975060.1; XP_007009602.2; XP_007033491.1; XP_017974759.1; XP_007032832.2; XP_017982637.1; XP_007035799.2; XP_007030540.2; XP_017974757.1; XP_017980492.1; XP_017984705.1; XP_007038795.2; XP_017970878.1; XP_007047405.2; XP_007047406.2; XP_017969778.1; XP_017969694.1; XP_017970557.1	792; 867; 888; 910; 894; 888; 822; 892; 839; 807; 832; 855; 858; 884; 842; 849; 848; 874; 843; 847; 838; 837; 869	Pfam	PF07714, PF12819; PF07714, PF12819; PF07714, PF12819; PF07714, PF12819; PF12819, PF07714; PF12819, PF07714; PF07714, PF12819; PF07714, PF12819; PF12819, PF07714; PF07714, PF12819; PF12819, PF07714; PF07714, PF12819; PF12819, PF07714; PF12819, PF07714; PF07714, PF12819; PF12819, PF07714; PF12819, PF07714; PF12819, PF07714; PF07714, PF12819; PF12819, PF07714; PF07714, PF12819; PF07714, PF12819; PF07714, PF12819	Protein tyrosine and serine/threonine kinase, Malectin-like domain; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Protein tyrosine and serine/threonine kinase, Malectin-like domain	IPR001245, IPR024788; IPR001245, IPR024788; IPR001245, IPR024788; IPR001245, IPR024788; IPR024788, IPR001245; IPR024788, IPR001245; IPR001245, IPR024788; IPR001245, IPR024788; IPR024788, IPR001245; IPR001245, IPR024788; IPR024788, IPR001245; IPR001245, IPR024788; IPR024788, IPR001245; IPR024788, IPR001245; IPR001245, IPR024788; IPR024788, IPR001245; IPR024788, IPR001245; IPR024788, IPR001245; IPR001245, IPR024788; IPR024788, IPR001245; IPR001245, IPR024788; IPR001245, IPR024788; IPR001245, IPR024788	Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain
hsd_id_Theobroma_cacao_2404	XP_017970614.1; XP_017981763.1; XP_017977896.1	272; 289; 234	Pfam	PF03134; PF03134; PF03134	TB2/DP1, HVA22 family; TB2/DP1, HVA22 family; TB2/DP1, HVA22 family	IPR004345; IPR004345; IPR004345	TB2/DP1/HVA22-related protein; TB2/DP1/HVA22-related protein; TB2/DP1/HVA22-related protein
hsd_id_Theobroma_cacao_2405	XP_017970616.1; XP_017970647.1; XP_017970675.1	249; 297; 192	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2406	XP_017970665.1; XP_017970676.1	123; 115	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2407	XP_017970693.1; XP_017985280.1; XP_017985327.1	160; 139; 139	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2408	XP_017970759.1; XP_017973304.1	321; 273	Pfam	PF01812; PF01812	5-formyltetrahydrofolate cyclo-ligase family; 5-formyltetrahydrofolate cyclo-ligase family	IPR002698; IPR002698	5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase
hsd_id_Theobroma_cacao_2409	XP_017970781.1; XP_017970911.1	969; 975	Pfam	PF00931; PF00931	NB-ARC domain; NB-ARC domain	IPR002182; IPR002182	NB-ARC; NB-ARC
hsd_id_Theobroma_cacao_2410	XP_017970849.1; XP_017975363.1	522; 547	Pfam	PF00013; PF00013	KH domain; KH domain	IPR004088; IPR004088	K Homology domain, type 1; K Homology domain, type 1
hsd_id_Theobroma_cacao_2411	XP_017970903.1; XP_007047753.2	751; 706	Pfam	PF00013; PF00013	KH domain; KH domain	IPR004088; IPR004088	K Homology domain, type 1; K Homology domain, type 1
hsd_id_Theobroma_cacao_2412	XP_017970933.1; XP_017971076.1	559; 559	Pfam	PF04515; PF04515	Plasma-membrane choline transporter; Plasma-membrane choline transporter	IPR007603; IPR007603	Choline transporter-like; Choline transporter-like
hsd_id_Theobroma_cacao_2413	XP_017970938.1; XP_017975342.1	191; 174	Pfam	PF12689; PF12689	Acid Phosphatase; Acid Phosphatase	IPR010036; IPR010036	Magnesium-dependent phosphatase-1, eukaryotic/archaeal-type; Magnesium-dependent phosphatase-1, eukaryotic/archaeal-type
hsd_id_Theobroma_cacao_2414	XP_017970966.1; XP_017974338.1	644; 636	Pfam	PF01762, PF00337; PF01762, PF00337	Galactosyltransferase, Galactoside-binding lectin; Galactosyltransferase, Galactoside-binding lectin	IPR002659, IPR001079; IPR002659, IPR001079	Glycosyl transferase, family 31, Galectin, carbohydrate recognition domain; Glycosyl transferase, family 31, Galectin, carbohydrate recognition domain
hsd_id_Theobroma_cacao_2415	XP_017971018.1; XP_017983064.1	584; 569	Pfam	PF00854; PF00854	POT family; POT family	IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_2416	XP_017971020.1; XP_017973789.1; XP_017977243.1; XP_007052205.2; XP_007052207.2; XP_017971013.1; XP_007038017.2; XP_007043635.2; XP_017980011.1; XP_017970620.1; XP_007031914.2; XP_017978773.1; XP_007046540.1	480; 560; 389; 428; 331; 511; 382; 235; 238; 310; 327; 143; 198	Pfam	PF03110; PF03110; PF03110; PF03110; PF03110; PF03110; PF03110; PF03110; PF03110; PF03110; PF03110; PF03110; PF03110	SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain	IPR004333; IPR004333; IPR004333; IPR004333; IPR004333; IPR004333; IPR004333; IPR004333; IPR004333; IPR004333; IPR004333; IPR004333; IPR004333	SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain; SBP domain
hsd_id_Theobroma_cacao_2417	XP_017971100.1; XP_017983392.1; XP_017981702.1	78; 78; 77	Pfam	PF04419, PF12907; PF04419, PF12907; PF12907, PF04419	4F5 protein related disordered region, Zinc-binding; 4F5 protein related disordered region, Zinc-binding; Zinc-binding, 4F5 protein related disordered region	IPR007513, IPR039438; IPR007513, IPR039438; IPR039438, IPR007513	Uncharacterised protein family SERF, N-terminal, At2g23090-like, zinc-binding domain; Uncharacterised protein family SERF, N-terminal, At2g23090-like, zinc-binding domain; At2g23090-like, zinc-binding domain, Uncharacterised protein family SERF, N-terminal
hsd_id_Theobroma_cacao_2418	XP_017971111.1; XP_017977048.1	302; 306	Pfam	PF00804, PF05739; PF05739, PF00804	Syntaxin, SNARE domain; SNARE domain, Syntaxin	IPR006011, IPR000727; IPR000727, IPR006011	Syntaxin, N-terminal domain, Target SNARE coiled-coil homology domain; Target SNARE coiled-coil homology domain, Syntaxin, N-terminal domain
hsd_id_Theobroma_cacao_2419	XP_017971134.1; XP_017975269.1	95; 78	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2420	XP_017971142.1; XP_017975291.1	265; 268	Pfam	PF12906, PF12428; PF12428, PF12906	RING-variant domain, Protein of unknown function (DUF3675); Protein of unknown function (DUF3675), RING-variant domain	IPR011016, IPR022143; IPR022143, IPR011016	Zinc finger, RING-CH-type, Protein of unknown function DUF3675; Protein of unknown function DUF3675, Zinc finger, RING-CH-type
hsd_id_Theobroma_cacao_2421	XP_017971172.1; XP_017971173.1	558; 552	Pfam	PF01554; PF01554	MatE; MatE	IPR002528; IPR002528	Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein
hsd_id_Theobroma_cacao_2422	XP_017971277.1; XP_017973887.1	417; 423	Pfam	PF03097; PF03097	BRO1-like domain; BRO1-like domain	IPR004328; IPR004328	BRO1 domain; BRO1 domain
hsd_id_Theobroma_cacao_2423	XP_017971303.1; XP_017972721.1	233; 236	Pfam	PF01486, PF00319; PF01486, PF00319	K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain); K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain)	IPR002487, IPR002100; IPR002487, IPR002100	Transcription factor, K-box, Transcription factor, MADS-box; Transcription factor, K-box, Transcription factor, MADS-box
hsd_id_Theobroma_cacao_2424	XP_017971305.1; XP_017976057.1	222; 188	Pfam	PF04140; PF04140	Isoprenylcysteine carboxyl methyltransferase (ICMT) family; Isoprenylcysteine carboxyl methyltransferase (ICMT) family	IPR007269; IPR007269	Isoprenylcysteine carboxyl methyltransferase; Isoprenylcysteine carboxyl methyltransferase
hsd_id_Theobroma_cacao_2425	XP_017971308.1; XP_017975606.1	512; 520	Pfam	PF06414; PF06414	Zeta toxin; Zeta toxin	IPR010488; IPR010488	Zeta toxin domain; Zeta toxin domain
hsd_id_Theobroma_cacao_2426	XP_017971311.1; XP_017984351.1; XP_017984347.1; XP_017984359.1	164; 169; 169; 170	Pfam	PF02365; PF02365; PF02365; PF02365	No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein	IPR003441; IPR003441; IPR003441; IPR003441	NAC domain; NAC domain; NAC domain; NAC domain
hsd_id_Theobroma_cacao_2427	XP_017971349.1; XP_017973773.1	339; 359	Pfam	PF05368; PF05368	NmrA-like family; NmrA-like family	IPR008030; IPR008030	NmrA-like domain; NmrA-like domain
hsd_id_Theobroma_cacao_2428	XP_017971388.1; XP_017974708.1	351; 398	Pfam	PF01985; PF01985	CRS1 / YhbY (CRM) domain; CRS1 / YhbY (CRM) domain	IPR001890; IPR001890	RNA-binding, CRM domain; RNA-binding, CRM domain
hsd_id_Theobroma_cacao_2429	XP_017971393.1; XP_007040323.2; XP_007027983.2; XP_007015671.2; XP_017981722.1; XP_007047070.2	680; 661; 668; 732; 684; 825	Pfam	PF05920, PF07526; PF07526, PF05920; PF07526, PF05920; PF05920, PF07526; PF05920, PF07526; PF07526, PF05920	Homeobox KN domain, Associated with HOX; Associated with HOX, Homeobox KN domain; Associated with HOX, Homeobox KN domain; Homeobox KN domain, Associated with HOX; Homeobox KN domain, Associated with HOX; Associated with HOX, Homeobox KN domain	IPR008422, IPR006563; IPR006563, IPR008422; IPR006563, IPR008422; IPR008422, IPR006563; IPR008422, IPR006563; IPR006563, IPR008422	Homeobox KN domain, POX domain; POX domain, Homeobox KN domain; POX domain, Homeobox KN domain; Homeobox KN domain, POX domain; Homeobox KN domain, POX domain; POX domain, Homeobox KN domain
hsd_id_Theobroma_cacao_2430	XP_017971415.1; XP_017978780.1	97; 108	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2431	XP_017971441.1; XP_017981234.1	260; 228	Pfam	PF02362; PF02362	B3 DNA binding domain; B3 DNA binding domain	IPR003340; IPR003340	B3 DNA binding domain; B3 DNA binding domain
hsd_id_Theobroma_cacao_2432	XP_017971485.1; XP_017972215.1	339; 326	Pfam	PF13920; PF13920	Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger)	-; -	-; -
hsd_id_Theobroma_cacao_2433	XP_017971486.1; XP_007018740.2; XP_007042914.2; XP_017981831.1; XP_017981764.1; XP_007018743.2	315; 305; 295; 319; 319; 314	Pfam	PF04674; PF04674; PF04674; PF04674; PF04674; PF04674	Phosphate-induced protein 1 conserved region; Phosphate-induced protein 1 conserved region; Phosphate-induced protein 1 conserved region; Phosphate-induced protein 1 conserved region; Phosphate-induced protein 1 conserved region; Phosphate-induced protein 1 conserved region	IPR006766; IPR006766; IPR006766; IPR006766; IPR006766; IPR006766	Protein EXORDIUM-like; Protein EXORDIUM-like; Protein EXORDIUM-like; Protein EXORDIUM-like; Protein EXORDIUM-like; Protein EXORDIUM-like
hsd_id_Theobroma_cacao_2434	XP_017971495.1; XP_017975861.1	541; 550	Pfam	PF07059; PF07059	Protein of unknown function (DUF1336); Protein of unknown function (DUF1336)	IPR009769; IPR009769	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal; Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
hsd_id_Theobroma_cacao_2435	XP_017971496.1; XP_017978646.1	758; 766	Pfam	PF08700, PF16528; PF16528, PF08700	Vps51/Vps67, Exocyst component 84 C-terminal; Exocyst component 84 C-terminal, Vps51/Vps67	-, IPR032403; IPR032403, -	-, Exocyst component Exo84, C-terminal; Exocyst component Exo84, C-terminal, -
hsd_id_Theobroma_cacao_2436	XP_017971516.1; XP_017980172.1	305; 299	Pfam	PF16544; PF16544	Homodimerisation region of STAR domain protein; Homodimerisation region of STAR domain protein	IPR032377; IPR032377	STAR protein, homodimerisation region; STAR protein, homodimerisation region
hsd_id_Theobroma_cacao_2437	XP_017971554.1; XP_017975688.1; XP_017981807.1; XP_017969466.1; XP_017979046.1; XP_007048627.2; XP_017981879.1; XP_007047820.2	316; 341; 296; 358; 292; 253; 257; 259	Pfam	PF04770; PF04770; PF04770; PF04770; PF04770; PF04770; PF04770; PF04770	ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region; ZF-HD protein dimerisation region	IPR006456; IPR006456; IPR006456; IPR006456; IPR006456; IPR006456; IPR006456; IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain; ZF-HD homeobox protein, Cys/His-rich dimerisation domain
hsd_id_Theobroma_cacao_2438	XP_017971576.1; XP_017973342.1	412; 417	Pfam	PF03016; PF03016	Exostosin family; Exostosin family	IPR040911; IPR040911	Exostosin, GT47 domain; Exostosin, GT47 domain
hsd_id_Theobroma_cacao_2439	XP_017971601.1; XP_017974093.1	308; 316	Pfam	PF03798; PF03798	TLC domain; TLC domain	IPR006634; IPR006634	TRAM/LAG1/CLN8 homology domain; TRAM/LAG1/CLN8 homology domain
hsd_id_Theobroma_cacao_2440	XP_017971633.1; XP_017975628.1; XP_017983278.1	996; 1033; 978	Pfam	PF14700, PF00940; PF00940, PF14700; PF00940, PF14700	DNA-directed RNA polymerase N-terminal, DNA-dependent RNA polymerase; DNA-dependent RNA polymerase, DNA-directed RNA polymerase N-terminal; DNA-dependent RNA polymerase, DNA-directed RNA polymerase N-terminal	IPR029262, IPR002092; IPR002092, IPR029262; IPR002092, IPR029262	DNA-directed RNA polymerase, N-terminal, DNA-directed RNA polymerase, phage-type; DNA-directed RNA polymerase, phage-type, DNA-directed RNA polymerase, N-terminal; DNA-directed RNA polymerase, phage-type, DNA-directed RNA polymerase, N-terminal
hsd_id_Theobroma_cacao_2441	XP_017971635.1; XP_017981454.1	36; 36	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2442	XP_017971640.1; XP_017977483.1; XP_007039984.2; XP_007051453.2	340; 307; 312; 294	Pfam	PF01529; PF01529; PF01529; PF01529	DHHC palmitoyltransferase; DHHC palmitoyltransferase; DHHC palmitoyltransferase; DHHC palmitoyltransferase	IPR001594; IPR001594; IPR001594; IPR001594	Palmitoyltransferase, DHHC domain; Palmitoyltransferase, DHHC domain; Palmitoyltransferase, DHHC domain; Palmitoyltransferase, DHHC domain
hsd_id_Theobroma_cacao_2443	XP_017971644.1; XP_017978937.1	481; 539	Pfam	PF00155; PF00155	Aminotransferase class I and II; Aminotransferase class I and II	IPR004839; IPR004839	Aminotransferase, class I/classII; Aminotransferase, class I/classII
hsd_id_Theobroma_cacao_2444	XP_017971652.1; XP_017985364.1; XP_017982411.1	544; 594; 539	Pfam	PF02990; PF02990; PF02990	Endomembrane protein 70; Endomembrane protein 70; Endomembrane protein 70	IPR004240; IPR004240; IPR004240	Nonaspanin (TM9SF); Nonaspanin (TM9SF); Nonaspanin (TM9SF)
hsd_id_Theobroma_cacao_2445	XP_017971676.1; XP_017975739.1; XP_017978620.1	385; 421; 373	Pfam	PF00627, PF09280, PF00240; PF09280, PF00627, PF00240; PF00627, PF09280, PF00240	UBA/TS-N domain, XPC-binding domain, Ubiquitin family; XPC-binding domain, UBA/TS-N domain, Ubiquitin family; UBA/TS-N domain, XPC-binding domain, Ubiquitin family	IPR015940, IPR015360, IPR000626; IPR015360, IPR015940, IPR000626; IPR015940, IPR015360, IPR000626	Ubiquitin-associated domain, XPC-binding domain, Ubiquitin-like domain; XPC-binding domain, Ubiquitin-associated domain, Ubiquitin-like domain; Ubiquitin-associated domain, XPC-binding domain, Ubiquitin-like domain
hsd_id_Theobroma_cacao_2446	XP_017971758.1; XP_017983424.1	843; 856	Pfam	PF07944; PF07944	Beta-L-arabinofuranosidase, GH127; Beta-L-arabinofuranosidase, GH127	IPR012878; IPR012878	Beta-L-arabinofuranosidase, GH127; Beta-L-arabinofuranosidase, GH127
hsd_id_Theobroma_cacao_2447	XP_017971785.1; XP_017985489.1	596; 585	Pfam	PF03321; PF03321	GH3 auxin-responsive promoter; GH3 auxin-responsive promoter	IPR004993; IPR004993	GH3 family; GH3 family
hsd_id_Theobroma_cacao_2448	XP_017971842.1; XP_017973762.1; XP_017978397.1	670; 670; 682	Pfam	PF00337, PF01762; PF01762, PF00337; PF01762, PF00337	Galactoside-binding lectin, Galactosyltransferase; Galactosyltransferase, Galactoside-binding lectin; Galactosyltransferase, Galactoside-binding lectin	IPR001079, IPR002659; IPR002659, IPR001079; IPR002659, IPR001079	Galectin, carbohydrate recognition domain, Glycosyl transferase, family 31; Glycosyl transferase, family 31, Galectin, carbohydrate recognition domain; Glycosyl transferase, family 31, Galectin, carbohydrate recognition domain
hsd_id_Theobroma_cacao_2449	XP_017971991.1; XP_017975132.1	289; 317	Pfam	PF01657; PF01657	Salt stress response/antifungal; Salt stress response/antifungal	IPR002902; IPR002902	Gnk2-homologous domain; Gnk2-homologous domain
hsd_id_Theobroma_cacao_2450	XP_017971995.1; XP_017980113.1; XP_017975524.1; XP_017980900.1; XP_017972208.1; XP_017974096.1; XP_017972424.1; XP_017973465.1	476; 470; 517; 471; 497; 497; 543; 493	Pfam	PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554; PF01554	MatE; MatE; MatE; MatE; MatE; MatE; MatE; MatE	IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528; IPR002528	Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein
hsd_id_Theobroma_cacao_2451	XP_017972021.1; XP_017974155.1	202; 209	Pfam	PF06552; PF06552	Plant specific mitochondrial import receptor subunit TOM20; Plant specific mitochondrial import receptor subunit TOM20	-; -	-; -
hsd_id_Theobroma_cacao_2452	XP_017972030.1; XP_017980522.1	408; 444	Pfam	PF05147; PF05147	Lanthionine synthetase C-like protein; Lanthionine synthetase C-like protein	IPR007822; IPR007822	Lanthionine synthetase C-like; Lanthionine synthetase C-like
hsd_id_Theobroma_cacao_2453	XP_017972038.1; XP_017975708.1	244; 254	Pfam	PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_2454	XP_017972045.1; XP_017982035.1; XP_017985196.1	106; 102; 148	Pfam	PF01133; PF01133; PF01133	Enhancer of rudimentary; Enhancer of rudimentary; Enhancer of rudimentary	IPR000781; IPR000781; IPR000781	Enhancer of rudimentary; Enhancer of rudimentary; Enhancer of rudimentary
hsd_id_Theobroma_cacao_2455	XP_017972067.1; XP_017976806.1	116; 147	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2456	XP_017972068.1; XP_017981153.1	176; 216	Pfam	PF14368; PF14368	Probable lipid transfer; Probable lipid transfer	IPR016140; IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
hsd_id_Theobroma_cacao_2457	XP_017972128.1; XP_017983964.1	391; 488	Pfam	PF13359; PF13359	DDE superfamily endonuclease; DDE superfamily endonuclease	IPR027806; IPR027806	Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain
hsd_id_Theobroma_cacao_2458	XP_017972197.1; XP_017973978.1	890; 915	Pfam	PF00931, PF18052; PF00931, PF18052	NB-ARC domain, Rx N-terminal domain; NB-ARC domain, Rx N-terminal domain	IPR002182, IPR041118; IPR002182, IPR041118	NB-ARC, Rx, N-terminal; NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_2459	XP_017972225.1; XP_017985278.1	323; 327	Pfam	PF13962; PF13962	Domain of unknown function; Domain of unknown function	IPR026961; IPR026961	PGG domain; PGG domain
hsd_id_Theobroma_cacao_2460	XP_017972231.1; XP_017975350.1	508; 508	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_2461	XP_017972261.1; XP_017978803.1	1020; 1025	Pfam	PF00168, PF02893, PF16016; PF16016, PF00168, PF02893	C2 domain, GRAM domain, VAD1 Analog of StAR-related lipid transfer domain; VAD1 Analog of StAR-related lipid transfer domain, C2 domain, GRAM domain	IPR000008, IPR004182, IPR031968; IPR031968, IPR000008, IPR004182	C2 domain, GRAM domain, VASt domain; VASt domain, C2 domain, GRAM domain
hsd_id_Theobroma_cacao_2462	XP_017972285.1; XP_017976529.1; XP_017984272.1; XP_017984306.1; XP_017976389.1	386; 311; 417; 346; 324	Pfam	; ; ; ; 	; ; ; ; 	; ; ; ; 	; ; ; ; 
hsd_id_Theobroma_cacao_2463	XP_017972298.1; XP_017980669.1	143; 140	Pfam	PF13616; PF13616	PPIC-type PPIASE domain; PPIC-type PPIASE domain	-; -	-; -
hsd_id_Theobroma_cacao_2464	XP_017972319.1; XP_017977708.1	139; 113	Pfam	PF04133; PF04133	Vacuolar protein sorting 55; Vacuolar protein sorting 55	IPR007262; IPR007262	Vps55/LEPROT; Vps55/LEPROT
hsd_id_Theobroma_cacao_2465	XP_017972322.1; XP_017975107.1	433; 443	Pfam	PF02458; PF02458	Transferase family; Transferase family	IPR003480; IPR003480	Transferase; Transferase
hsd_id_Theobroma_cacao_2466	XP_017972338.1; XP_007045211.2	390; 400	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2467	XP_017972345.1; XP_017972660.1	112; 112	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2468	XP_017972359.1; XP_017973522.1	757; 734	Pfam	PF01179, PF02728, PF02727; PF02728, PF01179, PF02727	Copper amine oxidase, enzyme domain, Copper amine oxidase, N3 domain, Copper amine oxidase, N2 domain; Copper amine oxidase, N3 domain, Copper amine oxidase, enzyme domain, Copper amine oxidase, N2 domain	IPR015798, IPR015802, IPR015800; IPR015802, IPR015798, IPR015800	Copper amine oxidase, catalytic domain, Copper amine oxidase, N3-terminal, Copper amine oxidase, N2-terminal; Copper amine oxidase, N3-terminal, Copper amine oxidase, catalytic domain, Copper amine oxidase, N2-terminal
hsd_id_Theobroma_cacao_2469	XP_017972411.1; XP_017976669.1	256; 250	Pfam	PF00335; PF00335	Tetraspanin family; Tetraspanin family	IPR018499; IPR018499	Tetraspanin/Peripherin; Tetraspanin/Peripherin
hsd_id_Theobroma_cacao_2470	XP_017972444.1; XP_017976159.1	371; 354	Pfam	PF00892; PF00892	EamA-like transporter family; EamA-like transporter family	IPR000620; IPR000620	EamA domain; EamA domain
hsd_id_Theobroma_cacao_2471	XP_017972453.1; XP_017985266.1	588; 633	Pfam	PF03936, PF01397; PF03936, PF01397	Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain; Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain	IPR005630, IPR001906; IPR005630, IPR001906	Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain; Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain
hsd_id_Theobroma_cacao_2472	XP_017972459.1; XP_017972755.1; XP_017973523.1	533; 534; 532	Pfam	PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_2473	XP_017972484.1; XP_017972489.1	413; 413	Pfam	PF03080, PF14365; PF14365, PF03080	Neprosin, Neprosin activation peptide; Neprosin activation peptide, Neprosin	IPR004314, IPR025521; IPR025521, IPR004314	Neprosin, Neprosin activation peptide; Neprosin activation peptide, Neprosin
hsd_id_Theobroma_cacao_2474	XP_017972487.1; XP_017972730.1	471; 523	Pfam	PF04577; PF04577	Protein of unknown function (DUF563); Protein of unknown function (DUF563)	IPR007657; IPR007657	Glycosyltransferase 61; Glycosyltransferase 61
hsd_id_Theobroma_cacao_2475	XP_017972504.1; XP_017973983.1	348; 251	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2476	XP_017972539.1; XP_017972855.1	175; 175	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2477	XP_017972573.1; XP_017972422.1; XP_007044958.2	485; 509; 521	Pfam	PF00067; PF00067; PF00067	Cytochrome P450; Cytochrome P450; Cytochrome P450	IPR001128; IPR001128; IPR001128	Cytochrome P450; Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_2478	XP_017972603.1; XP_017978220.1	337; 292	Pfam	PF08031; PF08031	Berberine and berberine like; Berberine and berberine like	IPR012951; IPR012951	Berberine/berberine-like; Berberine/berberine-like
hsd_id_Theobroma_cacao_2479	XP_017972606.1; XP_017972885.1	966; 966	Pfam	PF08263, PF13516, PF13855; PF08263, PF13516, PF13855	Leucine rich repeat N-terminal domain, Leucine Rich repeat, Leucine rich repeat; Leucine rich repeat N-terminal domain, Leucine Rich repeat, Leucine rich repeat	IPR013210, IPR001611, IPR001611; IPR013210, IPR001611, IPR001611	Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat
hsd_id_Theobroma_cacao_2480	XP_017972625.1; XP_017980379.1; XP_017979822.1	330; 354; 354	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2481	XP_017972664.1; XP_007048067.1; XP_017971626.1; XP_017978321.1	163; 162; 157; 155	Pfam	PF13639; PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2482	XP_017972694.1; XP_017974071.1	596; 600	Pfam	PF01204; PF01204	Trehalase; Trehalase	IPR001661; IPR001661	Glycoside hydrolase, family 37; Glycoside hydrolase, family 37
hsd_id_Theobroma_cacao_2483	XP_017972719.1; XP_017984324.1; XP_017973383.1; XP_017980989.1; XP_017982356.1; XP_017984331.1	181; 260; 245; 257; 215; 239	Pfam	; ; ; ; ; 	; ; ; ; ; 	; ; ; ; ; 	; ; ; ; ; 
hsd_id_Theobroma_cacao_2484	XP_017972723.1; XP_017978988.1	563; 587	Pfam	PF01544; PF01544	CorA-like Mg2+ transporter protein; CorA-like Mg2+ transporter protein	IPR002523; IPR002523	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB; Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB
hsd_id_Theobroma_cacao_2485	XP_017972729.1; XP_017984513.1; XP_017978481.1; XP_017976753.1; XP_017974787.1; XP_017976413.1; XP_017978539.1; XP_017980075.1; XP_017985223.1	166; 166; 156; 156; 156; 172; 147; 174; 169	Pfam	; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; 
hsd_id_Theobroma_cacao_2486	XP_017985493.1; XP_017972743.1	93; 93	Pfam	PF01780; PF01780	Ribosomal L37ae protein family; Ribosomal L37ae protein family	IPR002674; IPR002674	Ribosomal protein L37ae; Ribosomal protein L37ae
hsd_id_Theobroma_cacao_2487	XP_017972757.1; XP_017973594.1	318; 321	Pfam	PF14226, PF03171; PF03171, PF14226	non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal	IPR026992, IPR044861; IPR044861, IPR026992	Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain
hsd_id_Theobroma_cacao_2488	XP_017972774.1; XP_007029812.2; XP_017970246.1	370; 374; 350	Pfam	PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2489	XP_017972785.1; XP_017977445.1	663; 675	Pfam	PF00995; PF00995	Sec1 family; Sec1 family	IPR001619; IPR001619	Sec1-like protein; Sec1-like protein
hsd_id_Theobroma_cacao_2490	XP_017972827.1; XP_017981015.1	234; 265	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2491	XP_017972872.1; XP_017973397.1	1217; 1293	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2492	XP_017972919.1; XP_017973311.1	646; 650	Pfam	PF11837, PF00251, PF08244; PF00251, PF11837, PF08244	Domain of unknown function (DUF3357), Glycosyl hydrolases family 32 N-terminal domain, Glycosyl hydrolases family 32 C terminal; Glycosyl hydrolases family 32 N-terminal domain, Domain of unknown function (DUF3357), Glycosyl hydrolases family 32 C terminal	IPR021792, IPR013148, IPR013189; IPR013148, IPR021792, IPR013189	Beta-fructofuranosidase, N-terminal domain, Glycosyl hydrolase family 32, N-terminal, Glycosyl hydrolase family 32, C-terminal; Glycosyl hydrolase family 32, N-terminal, Beta-fructofuranosidase, N-terminal domain, Glycosyl hydrolase family 32, C-terminal
hsd_id_Theobroma_cacao_2493	XP_017972959.1; XP_017973177.1	523; 522	Pfam	PF13193, PF00501; PF13193, PF00501	AMP-binding enzyme C-terminal domain, AMP-binding enzyme; AMP-binding enzyme C-terminal domain, AMP-binding enzyme	IPR025110, IPR000873; IPR025110, IPR000873	AMP-binding enzyme, C-terminal domain, AMP-dependent synthetase/ligase; AMP-binding enzyme, C-terminal domain, AMP-dependent synthetase/ligase
hsd_id_Theobroma_cacao_2494	XP_017972969.1; XP_017981627.1; XP_017975407.1; XP_007050665.2; XP_007041434.1; XP_007047617.1	550; 531; 498; 487; 425; 418	Pfam	PF01595; PF01595; PF01595; PF01595; PF01595; PF01595	Cyclin M transmembrane N-terminal domain; Cyclin M transmembrane N-terminal domain; Cyclin M transmembrane N-terminal domain; Cyclin M transmembrane N-terminal domain; Cyclin M transmembrane N-terminal domain; Cyclin M transmembrane N-terminal domain	IPR002550; IPR002550; IPR002550; IPR002550; IPR002550; IPR002550	CNNM, transmembrane domain; CNNM, transmembrane domain; CNNM, transmembrane domain; CNNM, transmembrane domain; CNNM, transmembrane domain; CNNM, transmembrane domain
hsd_id_Theobroma_cacao_2495	XP_017972987.1; XP_017973091.1	467; 455	Pfam	PF05684; PF05684	Protein of unknown function (DUF819); Protein of unknown function (DUF819)	IPR008537; IPR008537	Protein of unknown function DUF819; Protein of unknown function DUF819
hsd_id_Theobroma_cacao_2496	XP_017973056.1; XP_017983838.1	218; 287	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2497	XP_017973093.1; XP_017981082.1	233; 253	Pfam	PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_2498	XP_017973132.1; XP_017973935.1; XP_017973133.1	744; 744; 743	Pfam	PF03552; PF03552; PF03552	Cellulose synthase; Cellulose synthase; Cellulose synthase	IPR005150; IPR005150; IPR005150	Cellulose synthase; Cellulose synthase; Cellulose synthase
hsd_id_Theobroma_cacao_2499	XP_017973155.1; XP_017976457.1	304; 308	Pfam	PF03732; PF03732	Retrotransposon gag protein; Retrotransposon gag protein	IPR005162; IPR005162	Retrotransposon gag domain; Retrotransposon gag domain
hsd_id_Theobroma_cacao_2500	XP_017973247.1; XP_007041613.2; XP_017981348.1; XP_017975334.1	984; 952; 935; 1004	Pfam	PF00564, PF02042; PF02042, PF00564; PF00564, PF02042; PF00564, PF02042	PB1 domain, RWP-RK domain; RWP-RK domain, PB1 domain; PB1 domain, RWP-RK domain; PB1 domain, RWP-RK domain	IPR000270, IPR003035; IPR003035, IPR000270; IPR000270, IPR003035; IPR000270, IPR003035	PB1 domain, RWP-RK domain; RWP-RK domain, PB1 domain; PB1 domain, RWP-RK domain; PB1 domain, RWP-RK domain
hsd_id_Theobroma_cacao_2501	XP_017973265.1; XP_017977940.1	128; 128	Pfam	PF01020, PF00240; PF01020, PF00240	Ribosomal L40e family, Ubiquitin family; Ribosomal L40e family, Ubiquitin family	IPR001975, IPR000626; IPR001975, IPR000626	Ribosomal protein L40e, Ubiquitin-like domain; Ribosomal protein L40e, Ubiquitin-like domain
hsd_id_Theobroma_cacao_2502	XP_017973271.1; XP_017975682.1	562; 545	Pfam	PF02201; PF02201	SWIB/MDM2 domain; SWIB/MDM2 domain	IPR003121; IPR003121	SWIB/MDM2 domain; SWIB/MDM2 domain
hsd_id_Theobroma_cacao_2503	XP_017973299.1; XP_017975386.1	781; 738	Pfam	PF00439, PF17035; PF00439, PF17035	Bromodomain, Bromodomain extra-terminal - transcription regulation; Bromodomain, Bromodomain extra-terminal - transcription regulation	IPR001487, IPR027353; IPR001487, IPR027353	Bromodomain, NET domain; Bromodomain, NET domain
hsd_id_Theobroma_cacao_2504	XP_017973320.1; XP_017977303.1; XP_017981576.1; XP_017983228.1; XP_017977208.1	1041; 995; 941; 932; 862	Pfam	PF14381, PF07714; PF14381, PF07714; PF07714, PF14381; PF14381, PF07714; PF14381, PF07714	Ethylene-responsive protein kinase Le-CTR1, Protein tyrosine and serine/threonine kinase; Ethylene-responsive protein kinase Le-CTR1, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Ethylene-responsive protein kinase Le-CTR1; Ethylene-responsive protein kinase Le-CTR1, Protein tyrosine and serine/threonine kinase; Ethylene-responsive protein kinase Le-CTR1, Protein tyrosine and serine/threonine kinase	-, IPR001245; -, IPR001245; IPR001245, -; -, IPR001245; -, IPR001245	-, Serine-threonine/tyrosine-protein kinase, catalytic domain; -, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, -; -, Serine-threonine/tyrosine-protein kinase, catalytic domain; -, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2505	XP_017973327.1; XP_017973468.1	547; 553	Pfam	PF10551, PF03108; PF10551, PF03108	MULE transposase domain, MuDR family transposase; MULE transposase domain, MuDR family transposase	IPR018289, IPR004332; IPR018289, IPR004332	MULE transposase domain, Transposase, MuDR, plant; MULE transposase domain, Transposase, MuDR, plant
hsd_id_Theobroma_cacao_2506	XP_017973332.1; XP_017974253.1	454; 435	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2507	XP_017973351.1; XP_007044279.2	229; 238	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2508	XP_017973357.1; XP_007016534.2; XP_007048258.1; XP_007048260.2; XP_007048259.2	211; 210; 220; 213; 205	Pfam	PF13639; PF13639; PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2509	XP_017973460.1; XP_017983576.1	1206; 1299	Pfam	PF10409, PF02181; PF02181, PF10409	C2 domain of PTEN tumour-suppressor protein, Formin Homology 2 Domain; Formin Homology 2 Domain, C2 domain of PTEN tumour-suppressor protein	IPR014020, IPR015425; IPR015425, IPR014020	Tensin phosphatase, C2 domain, Formin, FH2 domain; Formin, FH2 domain, Tensin phosphatase, C2 domain
hsd_id_Theobroma_cacao_2510	XP_017973462.1; XP_017977226.1	73; 72	Pfam	PF12554; PF12554	Mitotic-spindle organizing gamma-tubulin ring associated; Mitotic-spindle organizing gamma-tubulin ring associated	IPR022214; IPR022214	Mitotic-spindle organizing protein 1; Mitotic-spindle organizing protein 1
hsd_id_Theobroma_cacao_2511	XP_017973740.1; XP_017976335.1	493; 510	Pfam	PF03016; PF03016	Exostosin family; Exostosin family	IPR040911; IPR040911	Exostosin, GT47 domain; Exostosin, GT47 domain
hsd_id_Theobroma_cacao_2512	XP_017973778.1; XP_017973835.1; XP_017974480.1; XP_007051912.2; XP_007026002.1; XP_017971478.1; XP_017972893.1	801; 728; 702; 819; 720; 756; 810	Pfam	PF01852, PF00046; PF01852, PF00046; PF00046, PF01852; PF01852, PF00046; PF00046, PF01852; PF01852, PF00046; PF00046, PF01852	START domain, Homeodomain; START domain, Homeodomain; Homeodomain, START domain; START domain, Homeodomain; Homeodomain, START domain; START domain, Homeodomain; Homeodomain, START domain	IPR002913, IPR001356; IPR002913, IPR001356; IPR001356, IPR002913; IPR002913, IPR001356; IPR001356, IPR002913; IPR002913, IPR001356; IPR001356, IPR002913	START domain, Homeobox domain; START domain, Homeobox domain; Homeobox domain, START domain; START domain, Homeobox domain; Homeobox domain, START domain; START domain, Homeobox domain; Homeobox domain, START domain
hsd_id_Theobroma_cacao_2513	XP_017973804.1; XP_017975701.1	265; 264	Pfam	PF13561; PF13561	Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase	-; -	-; -
hsd_id_Theobroma_cacao_2514	XP_017973924.1; XP_017983094.1; XP_017981534.1	354; 292; 276	Pfam	PF00481; PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_2515	XP_017974039.1; XP_017975364.1	485; 485	Pfam	PF00670, PF05221; PF05221, PF00670	S-adenosyl-L-homocysteine hydrolase, NAD binding domain, S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, S-adenosyl-L-homocysteine hydrolase, NAD binding domain	IPR015878, IPR000043; IPR000043, IPR015878	S-adenosyl-L-homocysteine hydrolase, NAD binding domain, Adenosylhomocysteinase-like; Adenosylhomocysteinase-like, S-adenosyl-L-homocysteine hydrolase, NAD binding domain
hsd_id_Theobroma_cacao_2516	XP_017974042.1; XP_017980390.1; XP_017976175.1	347; 315; 343	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2517	XP_017974112.1; XP_017975916.1	456; 446	Pfam	PF13365, PF13180; PF13365, PF13180	Trypsin-like peptidase domain, PDZ domain; Trypsin-like peptidase domain, PDZ domain	-, IPR001478; -, IPR001478	-, PDZ domain; -, PDZ domain
hsd_id_Theobroma_cacao_2518	XP_017974113.1; XP_017976088.1	565; 623	Pfam	PF01095, PF04043; PF01095, PF04043	Pectinesterase, Plant invertase/pectin methylesterase inhibitor; Pectinesterase, Plant invertase/pectin methylesterase inhibitor	IPR000070, IPR006501; IPR000070, IPR006501	Pectinesterase, catalytic, Pectinesterase inhibitor domain; Pectinesterase, catalytic, Pectinesterase inhibitor domain
hsd_id_Theobroma_cacao_2519	XP_017974141.1; XP_017977558.1	377; 369	Pfam	PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_2520	XP_017974222.1; XP_017975401.1	461; 461	Pfam	PF00332, PF07983; PF07983, PF00332	Glycosyl hydrolases family 17, X8 domain; X8 domain, Glycosyl hydrolases family 17	IPR000490, IPR012946; IPR012946, IPR000490	Glycoside hydrolase family 17, X8 domain; X8 domain, Glycoside hydrolase family 17
hsd_id_Theobroma_cacao_2521	XP_017974249.1; XP_017983802.1	426; 400	Pfam	PF03348; PF03348	Serine incorporator (Serinc); Serine incorporator (Serinc)	IPR005016; IPR005016	Serine incorporator/TMS membrane protein; Serine incorporator/TMS membrane protein
hsd_id_Theobroma_cacao_2522	XP_017974271.1; XP_017974273.1	719; 721	Pfam	PF00069, PF08488, PF13947; PF08488, PF00069, PF13947	Protein kinase domain, Wall-associated kinase, Wall-associated receptor kinase galacturonan-binding; Wall-associated kinase, Protein kinase domain, Wall-associated receptor kinase galacturonan-binding	IPR000719, IPR013695, IPR025287; IPR013695, IPR000719, IPR025287	Protein kinase domain, Wall-associated receptor kinase, Wall-associated receptor kinase, galacturonan-binding domain; Wall-associated receptor kinase, Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain
hsd_id_Theobroma_cacao_2523	XP_017974305.1; XP_007013531.2; XP_017974479.1; XP_007033950.2	191; 233; 155; 220	Pfam	PF13499; PF13499; PF13499; PF13499	EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair	IPR002048; IPR002048; IPR002048; IPR002048	EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain
hsd_id_Theobroma_cacao_2524	XP_017974308.1; XP_017974408.1	329; 329	Pfam	PF08240, PF13602; PF08240, PF13602	Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase	IPR013154, -; IPR013154, -	Alcohol dehydrogenase, N-terminal, -; Alcohol dehydrogenase, N-terminal, -
hsd_id_Theobroma_cacao_2525	XP_017974332.1; XP_017974789.1; XP_017975913.1; XP_017974510.1	460; 466; 465; 466	Pfam	PF02458; PF02458; PF02458; PF02458	Transferase family; Transferase family; Transferase family; Transferase family	IPR003480; IPR003480; IPR003480; IPR003480	Transferase; Transferase; Transferase; Transferase
hsd_id_Theobroma_cacao_2526	XP_017974425.1; XP_017974606.1	574; 589	Pfam	PF13962, PF12796; PF12796, PF13962	Domain of unknown function, Ankyrin repeats (3 copies); Ankyrin repeats (3 copies), Domain of unknown function	IPR026961, IPR020683; IPR020683, IPR026961	PGG domain, Ankyrin repeat-containing domain; Ankyrin repeat-containing domain, PGG domain
hsd_id_Theobroma_cacao_2527	XP_017974430.1; XP_017974431.1	586; 592	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2528	XP_017974434.1; XP_017982418.1	458; 459	Pfam	PF13921; PF13921	Myb-like DNA-binding domain; Myb-like DNA-binding domain	-; -	-; -
hsd_id_Theobroma_cacao_2529	XP_017974449.1; XP_017979725.1; XP_017978303.1; XP_017979696.1	388; 393; 403; 427	Pfam	PF07727; PF07727; PF07727; PF07727	Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase)	IPR013103; IPR013103; IPR013103; IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase
hsd_id_Theobroma_cacao_2530	XP_017974452.1; XP_017977775.1; XP_007025890.1; XP_007021145.2	182; 181; 161; 165	Pfam	PF04398; PF04398; PF04398; PF04398	Protein of unknown function, DUF538; Protein of unknown function, DUF538; Protein of unknown function, DUF538; Protein of unknown function, DUF538	IPR007493; IPR007493; IPR007493; IPR007493	Protein of unknown function DUF538; Protein of unknown function DUF538; Protein of unknown function DUF538; Protein of unknown function DUF538
hsd_id_Theobroma_cacao_2531	XP_017974471.1; XP_017976594.1; XP_017974487.1; XP_017974542.1	177; 187; 169; 191	Pfam	PF14111; PF14111; PF14111; PF14111	Domain of unknown function (DUF4283); Domain of unknown function (DUF4283); Domain of unknown function (DUF4283); Domain of unknown function (DUF4283)	IPR025558; IPR025558; IPR025558; IPR025558	Domain of unknown function DUF4283; Domain of unknown function DUF4283; Domain of unknown function DUF4283; Domain of unknown function DUF4283
hsd_id_Theobroma_cacao_2532	XP_017974488.1; XP_017985386.1	212; 215	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2533	XP_017974513.1; XP_017984317.1	470; 471	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2534	XP_017974517.1; XP_017984589.1; XP_017984584.1; XP_017984588.1; XP_017984590.1; XP_017984591.1; XP_017984585.1; XP_017984592.1; XP_017974760.1; XP_017984594.1; XP_017985152.1; XP_017984235.1; XP_017985153.1; XP_017984236.1	348; 379; 394; 382; 379; 374; 391; 367; 338; 248; 248; 294; 239; 142	Pfam	PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2535	XP_017974524.1; XP_017981143.1; XP_017979811.1; XP_017978228.1; XP_017979751.1; XP_017979753.1; XP_017978227.1	304; 316; 330; 346; 286; 262; 400	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2536	XP_017974525.1; XP_017975415.1; XP_017974526.1	1031; 1084; 1102	Pfam	PF01582, PF00931; PF01582, PF00931; PF01582, PF00931	TIR domain, NB-ARC domain; TIR domain, NB-ARC domain; TIR domain, NB-ARC domain	IPR000157, IPR002182; IPR000157, IPR002182; IPR000157, IPR002182	Toll/interleukin-1 receptor homology (TIR) domain, NB-ARC; Toll/interleukin-1 receptor homology (TIR) domain, NB-ARC; Toll/interleukin-1 receptor homology (TIR) domain, NB-ARC
hsd_id_Theobroma_cacao_2537	XP_017974539.1; XP_017974540.1; XP_017974830.1	369; 326; 365	Pfam	PF03492; PF03492; PF03492	SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase	IPR005299; IPR005299; IPR005299	SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase; SAM dependent carboxyl methyltransferase
hsd_id_Theobroma_cacao_2538	XP_017974567.1; XP_017974834.1	273; 281	Pfam	PF01485, PF00097; PF01485, PF00097	IBR domain, a half RING-finger domain, Zinc finger, C3HC4 type (RING finger); IBR domain, a half RING-finger domain, Zinc finger, C3HC4 type (RING finger)	IPR002867, IPR018957; IPR002867, IPR018957	IBR domain, Zinc finger, C3HC4 RING-type; IBR domain, Zinc finger, C3HC4 RING-type
hsd_id_Theobroma_cacao_2539	XP_017974571.1; XP_017974572.1	256; 226	Pfam	PF11955; PF11955	Plant organelle RNA recognition domain; Plant organelle RNA recognition domain	IPR021099; IPR021099	Plant organelle RNA recognition domain; Plant organelle RNA recognition domain
hsd_id_Theobroma_cacao_2540	XP_017974577.1; XP_017975794.1	987; 962	Pfam	PF00069, PF13947; PF13947, PF00069	Protein kinase domain, Wall-associated receptor kinase galacturonan-binding; Wall-associated receptor kinase galacturonan-binding, Protein kinase domain	IPR000719, IPR025287; IPR025287, IPR000719	Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain; Wall-associated receptor kinase, galacturonan-binding domain, Protein kinase domain
hsd_id_Theobroma_cacao_2541	XP_017974614.1; XP_017974616.1	346; 439	Pfam	PF02353; PF02353	Mycolic acid cyclopropane synthetase; Mycolic acid cyclopropane synthetase	-; -	-; -
hsd_id_Theobroma_cacao_2542	XP_017974635.1; XP_017974636.1; XP_017974801.1; XP_017984226.1; XP_017984228.1; XP_017975208.1	743; 742; 747; 747; 748; 755	Pfam	PF14310, PF01915, PF00933; PF00933, PF14310, PF01915; PF01915, PF00933, PF14310; PF14310, PF01915, PF00933; PF14310, PF01915, PF00933; PF01915, PF00933, PF14310	Fibronectin type III-like domain, Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 N terminal domain, Fibronectin type III-like domain, Glycosyl hydrolase family 3 C-terminal domain; Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain, Fibronectin type III-like domain; Fibronectin type III-like domain, Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain; Fibronectin type III-like domain, Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain, Fibronectin type III-like domain	IPR026891, IPR002772, IPR001764; IPR001764, IPR026891, IPR002772; IPR002772, IPR001764, IPR026891; IPR026891, IPR002772, IPR001764; IPR026891, IPR002772, IPR001764; IPR002772, IPR001764, IPR026891	Fibronectin type III-like domain, Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, N-terminal, Fibronectin type III-like domain, Glycoside hydrolase family 3 C-terminal domain; Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal, Fibronectin type III-like domain; Fibronectin type III-like domain, Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal; Fibronectin type III-like domain, Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal, Fibronectin type III-like domain
hsd_id_Theobroma_cacao_2543	XP_017974637.1; XP_017980794.1; XP_017980811.1; XP_017978896.1	1231; 1292; 1285; 1272	Pfam	PF00664, PF00005; PF00005, PF00664; PF00664, PF00005; PF00005, PF00664	ABC transporter transmembrane region, ABC transporter; ABC transporter, ABC transporter transmembrane region; ABC transporter transmembrane region, ABC transporter; ABC transporter, ABC transporter transmembrane region	IPR011527, IPR003439; IPR003439, IPR011527; IPR011527, IPR003439; IPR003439, IPR011527	ABC transporter type 1, transmembrane domain, ABC transporter-like, ATP-binding domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain; ABC transporter type 1, transmembrane domain, ABC transporter-like, ATP-binding domain; ABC transporter-like, ATP-binding domain, ABC transporter type 1, transmembrane domain
hsd_id_Theobroma_cacao_2544	XP_017974643.1; XP_017977711.1	876; 882	Pfam	PF13086, PF13087; PF13086, PF13087	AAA domain, AAA domain; AAA domain, AAA domain	IPR041677, IPR041679; IPR041677, IPR041679	DNA2/NAM7 helicase, helicase domain, DNA2/NAM7 helicase-like, C-terminal; DNA2/NAM7 helicase, helicase domain, DNA2/NAM7 helicase-like, C-terminal
hsd_id_Theobroma_cacao_2545	XP_017974648.1; XP_017977851.1	692; 699	Pfam	PF00501; PF00501	AMP-binding enzyme; AMP-binding enzyme	IPR000873; IPR000873	AMP-dependent synthetase/ligase; AMP-dependent synthetase/ligase
hsd_id_Theobroma_cacao_2546	XP_017974672.1; XP_017982304.1	324; 334	Pfam	PF13359; PF13359	DDE superfamily endonuclease; DDE superfamily endonuclease	IPR027806; IPR027806	Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain
hsd_id_Theobroma_cacao_2547	XP_017974683.1; XP_017985390.1; XP_017974693.1; XP_017974719.1; XP_017984282.1; XP_017984474.1	405; 405; 405; 398; 417; 399	Pfam	PF00295; PF00295; PF00295; PF00295; PF00295; PF00295	Glycosyl hydrolases family 28; Glycosyl hydrolases family 28; Glycosyl hydrolases family 28; Glycosyl hydrolases family 28; Glycosyl hydrolases family 28; Glycosyl hydrolases family 28	IPR000743; IPR000743; IPR000743; IPR000743; IPR000743; IPR000743	Glycoside hydrolase, family 28; Glycoside hydrolase, family 28; Glycoside hydrolase, family 28; Glycoside hydrolase, family 28; Glycoside hydrolase, family 28; Glycoside hydrolase, family 28
hsd_id_Theobroma_cacao_2548	XP_017974692.1; XP_017983758.1	421; 408	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2549	XP_017974706.1; XP_017983341.1	51; 54	Pfam	PF08132; PF08132	S-adenosyl-l-methionine decarboxylase leader peptide; S-adenosyl-l-methionine decarboxylase leader peptide	IPR012511; IPR012511	S-adenosyl-l-methionine decarboxylase leader peptide; S-adenosyl-l-methionine decarboxylase leader peptide
hsd_id_Theobroma_cacao_2550	XP_017974738.1; XP_017974752.1	294; 302	Pfam	PF00413, PF01471; PF01471, PF00413	Matrixin, Putative peptidoglycan binding domain; Putative peptidoglycan binding domain, Matrixin	IPR001818, IPR002477; IPR002477, IPR001818	Peptidase M10, metallopeptidase, Peptidoglycan binding-like; Peptidoglycan binding-like, Peptidase M10, metallopeptidase
hsd_id_Theobroma_cacao_2551	XP_017974743.1; XP_017978555.1	351; 340	Pfam	PF08569; PF08569	Mo25-like; Mo25-like	IPR013878; IPR013878	Mo25-like; Mo25-like
hsd_id_Theobroma_cacao_2552	XP_017974750.1; XP_017974839.1	143; 123	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2553	XP_017974828.1; XP_017982253.1; XP_017980959.1	403; 404; 400	Pfam	PF00295; PF00295; PF00295	Glycosyl hydrolases family 28; Glycosyl hydrolases family 28; Glycosyl hydrolases family 28	IPR000743; IPR000743; IPR000743	Glycoside hydrolase, family 28; Glycoside hydrolase, family 28; Glycoside hydrolase, family 28
hsd_id_Theobroma_cacao_2554	XP_017974841.1; XP_017976903.1	132; 167	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2555	XP_017974847.1; XP_017974848.1	189; 189	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2556	XP_017974928.1; XP_017979528.1	1032; 981	Pfam	PF03110; PF03110	SBP domain; SBP domain	IPR004333; IPR004333	SBP domain; SBP domain
hsd_id_Theobroma_cacao_2557	XP_017975028.1; XP_007045209.2	975; 975	Pfam	PF04576; PF04576	Zein-binding; Zein-binding	IPR007656; IPR007656	GTD-binding domain; GTD-binding domain
hsd_id_Theobroma_cacao_2558	XP_017975035.1; XP_017982171.1	344; 347	Pfam	PF08423; PF08423	Rad51; Rad51	IPR013632; IPR013632	DNA recombination and repair protein Rad51-like, C-terminal; DNA recombination and repair protein Rad51-like, C-terminal
hsd_id_Theobroma_cacao_2559	XP_017975123.1; XP_017981054.1	381; 414	Pfam	PF01494; PF01494	FAD binding domain; FAD binding domain	IPR002938; IPR002938	FAD-binding domain; FAD-binding domain
hsd_id_Theobroma_cacao_2560	XP_017975154.1; XP_017982280.1	195; 175	Pfam	PF03879; PF03879	Cgr1 family; Cgr1 family	IPR005579; IPR005579	Cgr1-like; Cgr1-like
hsd_id_Theobroma_cacao_2561	XP_017975194.1; XP_017976027.1	324; 320	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_2562	XP_017975288.1; XP_017982604.1	354; 371	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2563	XP_017975368.1; XP_017983899.1; XP_017983597.1; XP_017980773.1	994; 947; 985; 966	Pfam	PF02171, PF16487, PF16486, PF08699, PF02170, PF16488; PF16486, PF02171, PF08699, PF16487, PF16488, PF02170; PF08699, PF02171, PF16488, PF16487, PF16486, PF02170; PF02171, PF16486, PF16487, PF16488, PF08699, PF02170	Piwi domain, Mid domain of argonaute, N-terminal domain of argonaute, Argonaute linker 1 domain, PAZ domain, Argonaute linker 2 domain; N-terminal domain of argonaute, Piwi domain, Argonaute linker 1 domain, Mid domain of argonaute, Argonaute linker 2 domain, PAZ domain; Argonaute linker 1 domain, Piwi domain, Argonaute linker 2 domain, Mid domain of argonaute, N-terminal domain of argonaute, PAZ domain; Piwi domain, N-terminal domain of argonaute, Mid domain of argonaute, Argonaute linker 2 domain, Argonaute linker 1 domain, PAZ domain	IPR003165, IPR032473, IPR032474, IPR014811, IPR003100, IPR032472; IPR032474, IPR003165, IPR014811, IPR032473, IPR032472, IPR003100; IPR014811, IPR003165, IPR032472, IPR032473, IPR032474, IPR003100; IPR003165, IPR032474, IPR032473, IPR032472, IPR014811, IPR003100	Piwi domain, Protein argonaute, Mid domain, Protein argonaute, N-terminal, Argonaute, linker 1 domain, PAZ domain, Argonaute linker 2 domain; Protein argonaute, N-terminal, Piwi domain, Argonaute, linker 1 domain, Protein argonaute, Mid domain, Argonaute linker 2 domain, PAZ domain; Argonaute, linker 1 domain, Piwi domain, Argonaute linker 2 domain, Protein argonaute, Mid domain, Protein argonaute, N-terminal, PAZ domain; Piwi domain, Protein argonaute, N-terminal, Protein argonaute, Mid domain, Argonaute linker 2 domain, Argonaute, linker 1 domain, PAZ domain
hsd_id_Theobroma_cacao_2564	XP_017975427.1; XP_017979427.1	545; 578	Pfam	PF07779; PF07779	10 TM Acyl Transferase domain found in Cas1p; 10 TM Acyl Transferase domain found in Cas1p	IPR012419; IPR012419	Cas1p 10 TM acyl transferase domain; Cas1p 10 TM acyl transferase domain
hsd_id_Theobroma_cacao_2565	XP_017975443.1; XP_017977509.1	1107; 1137	Pfam	PF13091, PF00614; PF13091, PF00614	PLD-like domain, Phospholipase D Active site motif; PLD-like domain, Phospholipase D Active site motif	IPR025202, IPR001736; IPR025202, IPR001736	Phospholipase D-like domain, Phospholipase D/Transphosphatidylase; Phospholipase D-like domain, Phospholipase D/Transphosphatidylase
hsd_id_Theobroma_cacao_2566	XP_017975456.1; XP_017979954.1	534; 533	Pfam	PF01501; PF01501	Glycosyl transferase family 8; Glycosyl transferase family 8	IPR002495; IPR002495	Glycosyl transferase, family 8; Glycosyl transferase, family 8
hsd_id_Theobroma_cacao_2567	XP_017975529.1; XP_017980683.1	608; 608	Pfam	PF00285, PF00549; PF00285, PF00549	Citrate synthase, C-terminal domain, CoA-ligase; Citrate synthase, C-terminal domain, CoA-ligase	IPR002020, IPR005811; IPR002020, IPR005811	Citrate synthase, ATP-citrate lyase/succinyl-CoA ligase; Citrate synthase, ATP-citrate lyase/succinyl-CoA ligase
hsd_id_Theobroma_cacao_2568	XP_017975562.1; XP_017982779.1	731; 705	Pfam	PF00514, PF00651; PF00514, PF00651	Armadillo/beta-catenin-like repeat, BTB/POZ domain; Armadillo/beta-catenin-like repeat, BTB/POZ domain	IPR000225, IPR000210; IPR000225, IPR000210	Armadillo, BTB/POZ domain; Armadillo, BTB/POZ domain
hsd_id_Theobroma_cacao_2569	XP_017975626.1; XP_017975625.1; XP_017971627.1; XP_017975627.1; XP_007038004.1; XP_017975163.1; XP_007043960.1; XP_007038005.2	68; 70; 69; 142; 69; 70; 69; 173	Pfam	PF11820; PF11820; PF11820; PF11820; PF11820; PF11820; PF11820; PF11820	Protein of unknown function (DUF3339); Protein of unknown function (DUF3339); Protein of unknown function (DUF3339); Protein of unknown function (DUF3339); Protein of unknown function (DUF3339); Protein of unknown function (DUF3339); Protein of unknown function (DUF3339); Protein of unknown function (DUF3339)	IPR021775; IPR021775; IPR021775; IPR021775; IPR021775; IPR021775; IPR021775; IPR021775	Protein of unknown function DUF3339; Protein of unknown function DUF3339; Protein of unknown function DUF3339; Protein of unknown function DUF3339; Protein of unknown function DUF3339; Protein of unknown function DUF3339; Protein of unknown function DUF3339; Protein of unknown function DUF3339
hsd_id_Theobroma_cacao_2570	XP_017975653.1; XP_017978086.1	191; 151	Pfam	PF00786; PF00786	P21-Rho-binding domain; P21-Rho-binding domain	IPR000095; IPR000095	CRIB domain; CRIB domain
hsd_id_Theobroma_cacao_2571	XP_017975673.1; XP_017976866.1	356; 354	Pfam	PF10609; PF10609	NUBPL iron-transfer P-loop NTPase; NUBPL iron-transfer P-loop NTPase	IPR033756; IPR033756	Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35; Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35
hsd_id_Theobroma_cacao_2572	XP_017975695.1; XP_017975697.1	194; 180	Pfam	PF00782; PF00782	Dual specificity phosphatase, catalytic domain; Dual specificity phosphatase, catalytic domain	IPR000340; IPR000340	Dual specificity phosphatase, catalytic domain; Dual specificity phosphatase, catalytic domain
hsd_id_Theobroma_cacao_2573	XP_017975710.1; XP_017976653.1	487; 479	Pfam	PF00571, PF16561; PF00571, PF16561	CBS domain, Glycogen recognition site of AMP-activated protein kinase; CBS domain, Glycogen recognition site of AMP-activated protein kinase	IPR000644, IPR032640; IPR000644, IPR032640	CBS domain, AMP-activated protein kinase, glycogen-binding domain; CBS domain, AMP-activated protein kinase, glycogen-binding domain
hsd_id_Theobroma_cacao_2574	XP_017975766.1; XP_017976359.1	623; 603	Pfam	PF00152, PF01336; PF01336, PF00152	tRNA synthetases class II (D, K and N), OB-fold nucleic acid binding domain; OB-fold nucleic acid binding domain, tRNA synthetases class II (D, K and N)	IPR004364, IPR004365; IPR004365, IPR004364	Aminoacyl-tRNA synthetase, class II (D/K/N), OB-fold nucleic acid binding domain, AA-tRNA synthetase-type; OB-fold nucleic acid binding domain, AA-tRNA synthetase-type, Aminoacyl-tRNA synthetase, class II (D/K/N)
hsd_id_Theobroma_cacao_2575	XP_017975804.1; XP_017976295.1	882; 898	Pfam	PF01156; PF01156	Inosine-uridine preferring nucleoside hydrolase; Inosine-uridine preferring nucleoside hydrolase	IPR001910; IPR001910	Inosine/uridine-preferring nucleoside hydrolase domain; Inosine/uridine-preferring nucleoside hydrolase domain
hsd_id_Theobroma_cacao_2576	XP_017975811.1; XP_017983740.1	132; 122	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2577	XP_017975910.1; XP_017982614.1	159; 156	Pfam	PF09340; PF09340	Histone acetyltransferase subunit NuA4; Histone acetyltransferase subunit NuA4	IPR015418; IPR015418	Chromatin modification-related protein Eaf6; Chromatin modification-related protein Eaf6
hsd_id_Theobroma_cacao_2578	XP_017975958.1; XP_017982907.1	756; 680	Pfam	PF03101, PF04434, PF10551; PF03101, PF04434, PF10551	FAR1 DNA-binding domain, SWIM zinc finger, MULE transposase domain; FAR1 DNA-binding domain, SWIM zinc finger, MULE transposase domain	IPR004330, IPR007527, IPR018289; IPR004330, IPR007527, IPR018289	FAR1 DNA binding domain, Zinc finger, SWIM-type, MULE transposase domain; FAR1 DNA binding domain, Zinc finger, SWIM-type, MULE transposase domain
hsd_id_Theobroma_cacao_2579	XP_017975999.1; XP_017984890.1	38; 37	Pfam	PF10215; PF10215	Oligosaccaryltransferase; Oligosaccaryltransferase	IPR018943; IPR018943	Oligosaccaryltransferase; Oligosaccaryltransferase
hsd_id_Theobroma_cacao_2580	XP_017976002.1; XP_017984553.1	305; 378	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2581	XP_017976011.1; XP_017985259.1; XP_017976264.1	130; 137; 115	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2582	XP_017976034.1; XP_017977877.1	343; 264	Pfam	PF13561; PF13561	Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase	-; -	-; -
hsd_id_Theobroma_cacao_2583	XP_017976041.1; XP_017976341.1; XP_017976265.1	680; 650; 654	Pfam	PF00069, PF00139; PF00069, PF00139; PF00139, PF00069	Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain	IPR000719, IPR001220; IPR000719, IPR001220; IPR001220, IPR000719	Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain
hsd_id_Theobroma_cacao_2584	XP_017976061.1; XP_017982936.1	369; 391	Pfam	PF03088; PF03088	Strictosidine synthase; Strictosidine synthase	IPR018119; IPR018119	Strictosidine synthase, conserved region; Strictosidine synthase, conserved region
hsd_id_Theobroma_cacao_2585	XP_017976090.1; XP_017981909.1	328; 299	Pfam	PF00005; PF00005	ABC transporter; ABC transporter	IPR003439; IPR003439	ABC transporter-like, ATP-binding domain; ABC transporter-like, ATP-binding domain
hsd_id_Theobroma_cacao_2586	XP_017976095.1; XP_017976573.1; XP_017976574.1	396; 418; 431	Pfam	PF07734, PF00646; PF07734, PF00646; PF00646, PF07734	F-box associated, F-box domain; F-box associated, F-box domain; F-box domain, F-box associated	IPR006527, IPR001810; IPR006527, IPR001810; IPR001810, IPR006527	F-box associated domain, type 1, F-box domain; F-box associated domain, type 1, F-box domain; F-box domain, F-box associated domain, type 1
hsd_id_Theobroma_cacao_2587	XP_017976107.1; XP_017976109.1	658; 645	Pfam	PF14576, PF14577; PF14577, PF14576	Sieve element occlusion N-terminus, Sieve element occlusion C-terminus; Sieve element occlusion C-terminus, Sieve element occlusion N-terminus	IPR027942, IPR027944; IPR027944, IPR027942	Sieve element occlusion, N-terminal, Sieve element occlusion, C-terminal; Sieve element occlusion, C-terminal, Sieve element occlusion, N-terminal
hsd_id_Theobroma_cacao_2588	XP_017976133.1; XP_017976733.1	151; 142	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2589	XP_017976137.1; XP_017976787.1; XP_017976744.1	143; 136; 136	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2590	XP_017976145.1; XP_017977202.1; XP_017976190.1	970; 965; 1040	Pfam	PF05193, PF00675, PF16187; PF05193, PF00675, PF16187; PF16187, PF00675, PF05193	Peptidase M16 inactive domain, Insulinase (Peptidase family M16), Middle or third domain of peptidase_M16; Peptidase M16 inactive domain, Insulinase (Peptidase family M16), Middle or third domain of peptidase_M16; Middle or third domain of peptidase_M16, Insulinase (Peptidase family M16), Peptidase M16 inactive domain	IPR007863, IPR011765, IPR032632; IPR007863, IPR011765, IPR032632; IPR032632, IPR011765, IPR007863	Peptidase M16, C-terminal, Peptidase M16, N-terminal, Peptidase M16, middle/third domain; Peptidase M16, C-terminal, Peptidase M16, N-terminal, Peptidase M16, middle/third domain; Peptidase M16, middle/third domain, Peptidase M16, N-terminal, Peptidase M16, C-terminal
hsd_id_Theobroma_cacao_2591	XP_017976148.1; XP_017980477.1	986; 937	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_2592	XP_017976160.1; XP_017979526.1; XP_017980560.1	80; 82; 82	Pfam	PF01249; PF01249; PF01249	Ribosomal protein S21e; Ribosomal protein S21e; Ribosomal protein S21e	IPR001931; IPR001931; IPR001931	Ribosomal protein S21e; Ribosomal protein S21e; Ribosomal protein S21e
hsd_id_Theobroma_cacao_2593	XP_017976167.1; XP_017977467.1	1027; 1024	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2594	XP_017976178.1; XP_017978551.1	199; 184	Pfam	PF04043; PF04043	Plant invertase/pectin methylesterase inhibitor; Plant invertase/pectin methylesterase inhibitor	IPR006501; IPR006501	Pectinesterase inhibitor domain; Pectinesterase inhibitor domain
hsd_id_Theobroma_cacao_2595	XP_017976249.1; XP_017977318.1	221; 291	Pfam	PF00300; PF00300	Histidine phosphatase superfamily (branch 1); Histidine phosphatase superfamily (branch 1)	IPR013078; IPR013078	Histidine phosphatase superfamily, clade-1; Histidine phosphatase superfamily, clade-1
hsd_id_Theobroma_cacao_2596	XP_017976258.1; XP_017979514.1; XP_007025240.2	173; 209; 143	Pfam	PF04520; PF04520; PF04520	Senescence regulator; Senescence regulator; Senescence regulator	IPR007608; IPR007608; IPR007608	Senescence regulator S40; Senescence regulator S40; Senescence regulator S40
hsd_id_Theobroma_cacao_2597	XP_017976282.1; XP_017977282.1	674; 672	Pfam	PF00069, PF00139; PF00139, PF00069	Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain	IPR000719, IPR001220; IPR001220, IPR000719	Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain
hsd_id_Theobroma_cacao_2598	XP_017976293.1; XP_017976723.1	448; 448	Pfam	PF04564; PF04564	U-box domain; U-box domain	IPR003613; IPR003613	U box domain; U box domain
hsd_id_Theobroma_cacao_2599	XP_017976336.1; XP_017984991.1	674; 675	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2600	XP_017976365.1; XP_017976981.1	318; 336	Pfam	PF03107; PF03107	C1 domain; C1 domain	IPR004146; IPR004146	DC1; DC1
hsd_id_Theobroma_cacao_2601	XP_017976371.1; XP_007016874.1; XP_007010032.1	248; 269; 259	Pfam	PF07795; PF07795; PF07795	Protein of unknown function (DUF1635); Protein of unknown function (DUF1635); Protein of unknown function (DUF1635)	IPR012862; IPR012862; IPR012862	Protein of unknown function DUF1635; Protein of unknown function DUF1635; Protein of unknown function DUF1635
hsd_id_Theobroma_cacao_2602	XP_017976384.1; XP_017977314.1	370; 405	Pfam	PF03463, PF03465, PF03464; PF03465, PF03464, PF03463	eRF1 domain 1, eRF1 domain 3, eRF1 domain 2; eRF1 domain 3, eRF1 domain 2, eRF1 domain 1	IPR005140, IPR005142, IPR005141; IPR005142, IPR005141, IPR005140	eRF1 domain 1/Pelota-like, eRF1 domain 3, eRF1 domain 2; eRF1 domain 3, eRF1 domain 2, eRF1 domain 1/Pelota-like
hsd_id_Theobroma_cacao_2603	XP_017976386.1; XP_017981409.1; XP_017978226.1	688; 669; 582	Pfam	PF10312, PF09732; PF10312, PF09732; PF10312, PF09732	Conserved mid region of cactin, Cactus-binding C-terminus of cactin protein; Conserved mid region of cactin, Cactus-binding C-terminus of cactin protein; Conserved mid region of cactin, Cactus-binding C-terminus of cactin protein	IPR018816, IPR019134; IPR018816, IPR019134; IPR018816, IPR019134	Cactin, central domain, Cactin, C-terminal; Cactin, central domain, Cactin, C-terminal; Cactin, central domain, Cactin, C-terminal
hsd_id_Theobroma_cacao_2604	XP_017976391.1; XP_017976760.1	514; 508	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_2605	XP_017976415.1; XP_017978282.1	142; 146	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2606	XP_017976427.1; XP_017982346.1	125; 131	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2607	XP_017976431.1; XP_017978213.1	496; 489	Pfam	PF13960; PF13960	Domain of unknown function (DUF4218); Domain of unknown function (DUF4218)	IPR025452; IPR025452	Domain of unknown function DUF4218; Domain of unknown function DUF4218
hsd_id_Theobroma_cacao_2608	XP_017976445.1; XP_017977772.1	400; 388	Pfam	PF04193; PF04193	PQ loop repeat; PQ loop repeat	IPR006603; IPR006603	PQ-loop repeat; PQ-loop repeat
hsd_id_Theobroma_cacao_2609	XP_017976448.1; XP_017970465.1; XP_017982300.1; XP_017979889.1; XP_017976410.1; XP_017982350.1; XP_017974476.1; XP_017976429.1; XP_017976443.1; XP_017976434.1; XP_017979884.1; XP_017970439.1; XP_017974491.1; XP_017979880.1; XP_017982321.1	193; 185; 177; 167; 167; 173; 170; 162; 162; 170; 160; 160; 162; 160; 154	Pfam	; ; ; ; ; ; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; ; ; ; ; ; 
hsd_id_Theobroma_cacao_2610	XP_017976462.1; XP_017981040.1; XP_017974000.1; XP_017969850.1; XP_017981368.1; XP_017973223.1; XP_017977861.1; XP_007030058.2	1014; 1019; 1007; 1050; 1003; 1055; 998; 1045	Pfam	PF08372, PF00168; PF08372, PF00168; PF08372, PF00168; PF00168, PF08372; PF08372, PF00168; PF00168, PF08372; PF08372, PF00168; PF08372, PF00168	Plant phosphoribosyltransferase C-terminal, C2 domain; Plant phosphoribosyltransferase C-terminal, C2 domain; Plant phosphoribosyltransferase C-terminal, C2 domain; C2 domain, Plant phosphoribosyltransferase C-terminal; Plant phosphoribosyltransferase C-terminal, C2 domain; C2 domain, Plant phosphoribosyltransferase C-terminal; Plant phosphoribosyltransferase C-terminal, C2 domain; Plant phosphoribosyltransferase C-terminal, C2 domain	IPR013583, IPR000008; IPR013583, IPR000008; IPR013583, IPR000008; IPR000008, IPR013583; IPR013583, IPR000008; IPR000008, IPR013583; IPR013583, IPR000008; IPR013583, IPR000008	Phosphoribosyltransferase C-terminal, C2 domain; Phosphoribosyltransferase C-terminal, C2 domain; Phosphoribosyltransferase C-terminal, C2 domain; C2 domain, Phosphoribosyltransferase C-terminal; Phosphoribosyltransferase C-terminal, C2 domain; C2 domain, Phosphoribosyltransferase C-terminal; Phosphoribosyltransferase C-terminal, C2 domain; Phosphoribosyltransferase C-terminal, C2 domain
hsd_id_Theobroma_cacao_2611	XP_017976467.1; XP_017976468.1	370; 384	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2612	XP_017976482.1; XP_017976483.1	279; 287	Pfam	PF13456; PF13456	Reverse transcriptase-like; Reverse transcriptase-like	IPR002156; IPR002156	Ribonuclease H domain; Ribonuclease H domain
hsd_id_Theobroma_cacao_2613	XP_017976500.1; XP_017976502.1; XP_017976776.1; XP_017976782.1	2302; 2268; 2304; 2236	Pfam	PF00931; PF00931; PF00931; PF00931	NB-ARC domain; NB-ARC domain; NB-ARC domain; NB-ARC domain	IPR002182; IPR002182; IPR002182; IPR002182	NB-ARC; NB-ARC; NB-ARC; NB-ARC
hsd_id_Theobroma_cacao_2614	XP_017976504.1; XP_017976505.1	839; 935	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2615	XP_017976537.1; XP_017976539.1	436; 436	Pfam	PF00646; PF00646	F-box domain; F-box domain	IPR001810; IPR001810	F-box domain; F-box domain
hsd_id_Theobroma_cacao_2616	XP_017976548.1; XP_017976551.1	325; 326	Pfam	PF00931, PF18052; PF00931, PF18052	NB-ARC domain, Rx N-terminal domain; NB-ARC domain, Rx N-terminal domain	IPR002182, IPR041118; IPR002182, IPR041118	NB-ARC, Rx, N-terminal; NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_2617	XP_017976553.1; XP_017976554.1	611; 588	Pfam	PF19160, PF00069; PF00069, PF19160	SPARK, Protein kinase domain; Protein kinase domain, SPARK	IPR043891, IPR000719; IPR000719, IPR043891	SPARK domain, Protein kinase domain; Protein kinase domain, SPARK domain
hsd_id_Theobroma_cacao_2618	XP_017976558.1; XP_017976559.1	798; 793	Pfam	PF00931, PF18052; PF18052, PF00931	NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain	IPR002182, IPR041118; IPR041118, IPR002182	NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC
hsd_id_Theobroma_cacao_2619	XP_017976563.1; XP_017976561.1; XP_017984411.1; XP_017984219.1	355; 428; 397; 360	Pfam	PF03107; PF03107; PF03107; PF03107	C1 domain; C1 domain; C1 domain; C1 domain	IPR004146; IPR004146; IPR004146; IPR004146	DC1; DC1; DC1; DC1
hsd_id_Theobroma_cacao_2620	XP_017976570.1; XP_017976571.1; XP_017984318.1	469; 396; 417	Pfam	PF00646; PF00646; PF00646	F-box domain; F-box domain; F-box domain	IPR001810; IPR001810; IPR001810	F-box domain; F-box domain; F-box domain
hsd_id_Theobroma_cacao_2621	XP_017976581.1; XP_017977014.1	481; 459	Pfam	PF00931; PF00931	NB-ARC domain; NB-ARC domain	IPR002182; IPR002182	NB-ARC; NB-ARC
hsd_id_Theobroma_cacao_2622	XP_017976583.1; XP_017979538.1	2447; 2483	Pfam	PF12166; PF12166	Piezo non-specific cation channel, R-Ras-binding domain; Piezo non-specific cation channel, R-Ras-binding domain	IPR031334; IPR031334	Piezo non-specific cation channel, R-Ras-binding domain; Piezo non-specific cation channel, R-Ras-binding domain
hsd_id_Theobroma_cacao_2623	XP_017976610.1; XP_017977270.1	482; 476	Pfam	PF14144, PF00170; PF00170, PF14144	Seed dormancy control, bZIP transcription factor; bZIP transcription factor, Seed dormancy control	IPR025422, IPR004827; IPR004827, IPR025422	Transcription factor TGA like domain, Basic-leucine zipper domain; Basic-leucine zipper domain, Transcription factor TGA like domain
hsd_id_Theobroma_cacao_2624	XP_017976663.1; XP_017982147.1	302; 299	Pfam	PF05910; PF05910	Plant protein of unknown function (DUF868); Plant protein of unknown function (DUF868)	IPR008586; IPR008586	Protein of unknown function DUF868, plant; Protein of unknown function DUF868, plant
hsd_id_Theobroma_cacao_2625	XP_017976665.1; XP_017984075.1	774; 767	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2626	XP_017976670.1; XP_017975052.1; XP_017976343.1	362; 385; 393	Pfam	PF13920; PF13920; PF13920	Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger)	-; -; -	-; -; -
hsd_id_Theobroma_cacao_2627	XP_017976694.1; XP_017976771.1; XP_017982131.1; XP_017984172.1	169; 167; 163; 178	Pfam	PF13912; PF13912; PF13912; PF13912	C2H2-type zinc finger; C2H2-type zinc finger; C2H2-type zinc finger; C2H2-type zinc finger	-; -; -; -	-; -; -; -
hsd_id_Theobroma_cacao_2628	XP_017976698.1; XP_017984453.1	116; 106	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2629	XP_017976737.1; XP_017982935.1; XP_017983681.1	408; 405; 394	Pfam	PF04564; PF04564; PF04564	U-box domain; U-box domain; U-box domain	IPR003613; IPR003613; IPR003613	U box domain; U box domain; U box domain
hsd_id_Theobroma_cacao_2630	XP_017976759.1; XP_017984524.1; XP_017984320.1	195; 187; 175	Pfam	PF13359; PF13359; PF13359	DDE superfamily endonuclease; DDE superfamily endonuclease; DDE superfamily endonuclease	IPR027806; IPR027806; IPR027806	Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain
hsd_id_Theobroma_cacao_2631	XP_017984533.1; XP_017976784.1	167; 167	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2632	XP_017976815.1; XP_017983574.1	817; 813	Pfam	PF01434, PF17862, PF06480, PF00004; PF01434, PF06480, PF00004, PF17862	Peptidase family M41, AAA+ lid domain, FtsH Extracellular, ATPase family associated with various cellular activities (AAA); Peptidase family M41, FtsH Extracellular, ATPase family associated with various cellular activities (AAA), AAA+ lid domain	IPR000642, IPR041569, IPR011546, IPR003959; IPR000642, IPR011546, IPR003959, IPR041569	Peptidase M41, AAA ATPase, AAA+ lid domain, Peptidase M41, FtsH extracellular, ATPase, AAA-type, core; Peptidase M41, Peptidase M41, FtsH extracellular, ATPase, AAA-type, core, AAA ATPase, AAA+ lid domain
hsd_id_Theobroma_cacao_2633	XP_017976894.1; XP_017985052.1	77; 77	Pfam	PF08571; PF08571	Yos1-like; Yos1-like	IPR013880; IPR013880	Yos1-like; Yos1-like
hsd_id_Theobroma_cacao_2634	XP_017976974.1; XP_017984917.1	521; 486	Pfam	PF00415, PF13540; PF13540, PF00415	Regulator of chromosome condensation (RCC1) repeat, Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1) repeat, Regulator of chromosome condensation (RCC1) repeat	IPR000408, -; -, IPR000408	Regulator of chromosome condensation, RCC1, -; -, Regulator of chromosome condensation, RCC1
hsd_id_Theobroma_cacao_2635	XP_017977006.1; XP_017977659.1	404; 401	Pfam	PF04142; PF04142	Nucleotide-sugar transporter; Nucleotide-sugar transporter	IPR007271; IPR007271	Nucleotide-sugar transporter; Nucleotide-sugar transporter
hsd_id_Theobroma_cacao_2636	XP_017977015.1; XP_017984706.1	1920; 1998	Pfam	PF15629, PF15628; PF15628, PF15629	Permuted single zf-CXXC unit, RRM in Demeter; RRM in Demeter, Permuted single zf-CXXC unit	IPR028924, IPR028925; IPR028925, IPR028924	Permuted single zf-CXXC unit, Demeter, RRM-fold domain; Demeter, RRM-fold domain, Permuted single zf-CXXC unit
hsd_id_Theobroma_cacao_2637	XP_017977016.1; XP_017977101.1	450; 448	Pfam	PF12796, PF13962; PF13962, PF12796	Ankyrin repeats (3 copies), Domain of unknown function; Domain of unknown function, Ankyrin repeats (3 copies)	IPR020683, IPR026961; IPR026961, IPR020683	Ankyrin repeat-containing domain, PGG domain; PGG domain, Ankyrin repeat-containing domain
hsd_id_Theobroma_cacao_2638	XP_017977055.1; XP_017977854.1	452; 455	Pfam	PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_2639	XP_017977103.1; XP_017984922.1	1121; 1123	Pfam	PF01590, PF00989, PF02518, PF00360, PF08446; PF00360, PF08446, PF02518, PF01590, PF00989	GAF domain, PAS fold, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, Phytochrome region, PAS fold; Phytochrome region, PAS fold, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, GAF domain, PAS fold	IPR003018, IPR013767, IPR003594, IPR013515, IPR013654; IPR013515, IPR013654, IPR003594, IPR003018, IPR013767	GAF domain, PAS fold, Histidine kinase/HSP90-like ATPase, Phytochrome, central region, PAS fold-2; Phytochrome, central region, PAS fold-2, Histidine kinase/HSP90-like ATPase, GAF domain, PAS fold
hsd_id_Theobroma_cacao_2640	XP_017977206.1; XP_017977589.1	599; 544	Pfam	PF01699; PF01699	Sodium/calcium exchanger protein; Sodium/calcium exchanger protein	IPR004837; IPR004837	Sodium/calcium exchanger membrane region; Sodium/calcium exchanger membrane region
hsd_id_Theobroma_cacao_2641	XP_017977315.1; XP_017984925.1	541; 546	Pfam	PF14845, PF00728; PF00728, PF14845	beta-acetyl hexosaminidase like, Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, catalytic domain, beta-acetyl hexosaminidase like	IPR029019, IPR015883; IPR015883, IPR029019	Beta-hexosaminidase, eukaryotic type, N-terminal, Glycoside hydrolase family 20, catalytic domain; Glycoside hydrolase family 20, catalytic domain, Beta-hexosaminidase, eukaryotic type, N-terminal
hsd_id_Theobroma_cacao_2642	XP_017977317.1; XP_017978827.1	459; 536	Pfam	PF02450; PF02450	Lecithin:cholesterol acyltransferase; Lecithin:cholesterol acyltransferase	IPR003386; IPR003386	Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase; Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase
hsd_id_Theobroma_cacao_2643	XP_017977404.1; XP_017983090.1; XP_017981337.1	376; 362; 374	Pfam	PF14144, PF00170; PF14144, PF00170; PF14144, PF00170	Seed dormancy control, bZIP transcription factor; Seed dormancy control, bZIP transcription factor; Seed dormancy control, bZIP transcription factor	IPR025422, IPR004827; IPR025422, IPR004827; IPR025422, IPR004827	Transcription factor TGA like domain, Basic-leucine zipper domain; Transcription factor TGA like domain, Basic-leucine zipper domain; Transcription factor TGA like domain, Basic-leucine zipper domain
hsd_id_Theobroma_cacao_2644	XP_017977523.1; XP_017982957.1	280; 278	Pfam	PF00970, PF00175; PF00970, PF00175	Oxidoreductase FAD-binding domain, Oxidoreductase NAD-binding domain; Oxidoreductase FAD-binding domain, Oxidoreductase NAD-binding domain	IPR008333, IPR001433; IPR008333, IPR001433	Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain, Oxidoreductase FAD/NAD(P)-binding; Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain, Oxidoreductase FAD/NAD(P)-binding
hsd_id_Theobroma_cacao_2645	XP_017977565.1; XP_017977875.1	1527; 1524	Pfam	PF00931; PF00931	NB-ARC domain; NB-ARC domain	IPR002182; IPR002182	NB-ARC; NB-ARC
hsd_id_Theobroma_cacao_2646	XP_017977663.1; XP_017979631.1	846; 888	Pfam	PF04576; PF04576	Zein-binding; Zein-binding	IPR007656; IPR007656	GTD-binding domain; GTD-binding domain
hsd_id_Theobroma_cacao_2647	XP_017977666.1; XP_017977955.1	607; 550	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_2648	XP_017977713.1; XP_017983099.1	365; 365	Pfam	PF06058; PF06058	Dcp1-like decapping family; Dcp1-like decapping family	IPR010334; IPR010334	mRNA-decapping enzyme subunit 1; mRNA-decapping enzyme subunit 1
hsd_id_Theobroma_cacao_2649	XP_017977729.1; XP_017977945.1	478; 485	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2650	XP_017977741.1; XP_017982922.1	534; 502	Pfam	PF00561; PF00561	alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR000073; IPR000073	Alpha/beta hydrolase fold-1; Alpha/beta hydrolase fold-1
hsd_id_Theobroma_cacao_2651	XP_017977748.1; XP_007011209.1	98; 81	Pfam	PF04588; PF04588	Hypoxia induced protein conserved region; Hypoxia induced protein conserved region	IPR007667; IPR007667	Hypoxia induced protein, domain; Hypoxia induced protein, domain
hsd_id_Theobroma_cacao_2652	XP_017977758.1; XP_017982925.1	472; 467	Pfam	PF14541, PF14543; PF14541, PF14543	Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal	IPR032799, IPR032861; IPR032799, IPR032861	Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal
hsd_id_Theobroma_cacao_2653	XP_017977790.1; XP_007027646.2; XP_007024621.2; XP_007012668.2; XP_017969696.1; XP_007039373.2	342; 401; 357; 380; 452; 478	Pfam	PF08880, PF08879; PF08880, PF08879; PF08879, PF08880; PF08879, PF08880; PF08879, PF08880; PF08879, PF08880	QLQ, WRC; QLQ, WRC; WRC, QLQ; WRC, QLQ; WRC, QLQ; WRC, QLQ	IPR014978, IPR014977; IPR014978, IPR014977; IPR014977, IPR014978; IPR014977, IPR014978; IPR014977, IPR014978; IPR014977, IPR014978	Glutamine-Leucine-Glutamine, QLQ, WRC domain; Glutamine-Leucine-Glutamine, QLQ, WRC domain; WRC domain, Glutamine-Leucine-Glutamine, QLQ; WRC domain, Glutamine-Leucine-Glutamine, QLQ; WRC domain, Glutamine-Leucine-Glutamine, QLQ; WRC domain, Glutamine-Leucine-Glutamine, QLQ
hsd_id_Theobroma_cacao_2654	XP_017977796.1; XP_017980882.1	123; 133	Pfam	PF00226; PF00226	DnaJ domain; DnaJ domain	IPR001623; IPR001623	DnaJ domain; DnaJ domain
hsd_id_Theobroma_cacao_2655	XP_017977807.1; XP_017985221.1	425; 425	Pfam	PF05116, PF08472; PF05116, PF08472	Sucrose-6F-phosphate phosphohydrolase, Sucrose-6-phosphate phosphohydrolase C-terminal; Sucrose-6F-phosphate phosphohydrolase, Sucrose-6-phosphate phosphohydrolase C-terminal	IPR006380, IPR013679; IPR006380, IPR013679	Sucrose-phosphatase-like, N-terminal, Sucrose-phosphatase, C-terminal; Sucrose-phosphatase-like, N-terminal, Sucrose-phosphatase, C-terminal
hsd_id_Theobroma_cacao_2656	XP_017977818.1; XP_017977821.1	438; 386	Pfam	PF13365, PF17820; PF17820, PF13365	Trypsin-like peptidase domain, PDZ domain; PDZ domain, Trypsin-like peptidase domain	-, IPR041489; IPR041489, -	-, PDZ domain 6; PDZ domain 6, -
hsd_id_Theobroma_cacao_2657	XP_017977856.1; XP_017982926.1	492; 465	Pfam	PF02319, PF16421; PF02319, PF16421	E2F/DP family winged-helix DNA-binding domain, E2F transcription factor CC-MB domain; E2F/DP family winged-helix DNA-binding domain, E2F transcription factor CC-MB domain	IPR003316, IPR032198; IPR003316, IPR032198	E2F/DP family, winged-helix DNA-binding domain, E2F transcription factor, CC-MB domain; E2F/DP family, winged-helix DNA-binding domain, E2F transcription factor, CC-MB domain
hsd_id_Theobroma_cacao_2658	XP_017977995.1; XP_017983680.1	475; 505	Pfam	PF00675, PF05193; PF05193, PF00675	Insulinase (Peptidase family M16), Peptidase M16 inactive domain; Peptidase M16 inactive domain, Insulinase (Peptidase family M16)	IPR011765, IPR007863; IPR007863, IPR011765	Peptidase M16, N-terminal, Peptidase M16, C-terminal; Peptidase M16, C-terminal, Peptidase M16, N-terminal
hsd_id_Theobroma_cacao_2659	XP_017978063.1; XP_007025240.2	185; 143	Pfam	PF04520; PF04520	Senescence regulator; Senescence regulator	IPR007608; IPR007608	Senescence regulator S40; Senescence regulator S40
hsd_id_Theobroma_cacao_2660	XP_017978065.1; XP_007012389.2; XP_017982232.1	425; 464; 393	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2661	XP_017978070.1; XP_017983669.1	658; 682	Pfam	PF03081; PF03081	Exo70 exocyst complex subunit; Exo70 exocyst complex subunit	IPR004140; IPR004140	Exocyst complex component Exo70; Exocyst complex component Exo70
hsd_id_Theobroma_cacao_2662	XP_017978081.1; XP_017978127.1; XP_017983674.1	249; 165; 214	Pfam	PF03168; PF03168; PF03168	Late embryogenesis abundant protein; Late embryogenesis abundant protein; Late embryogenesis abundant protein	IPR004864; IPR004864; IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup; Late embryogenesis abundant protein, LEA_2 subgroup
hsd_id_Theobroma_cacao_2663	XP_017978096.1; XP_017983995.1	160; 137	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2664	XP_017978111.1; XP_017981974.1	88; 88	Pfam	PF01423; PF01423	LSM domain; LSM domain	IPR001163; IPR001163	LSM domain, eukaryotic/archaea-type; LSM domain, eukaryotic/archaea-type
hsd_id_Theobroma_cacao_2665	XP_017978113.1; XP_007013460.2	124; 143	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2666	XP_017978117.1; XP_017979900.1	403; 380	Pfam	PF00218; PF00218	Indole-3-glycerol phosphate synthase; Indole-3-glycerol phosphate synthase	IPR013798; IPR013798	Indole-3-glycerol phosphate synthase; Indole-3-glycerol phosphate synthase
hsd_id_Theobroma_cacao_2667	XP_017978136.1; XP_017983097.1	208; 251	Pfam	PF00190; PF00190	Cupin; Cupin	IPR006045; IPR006045	Cupin 1; Cupin 1
hsd_id_Theobroma_cacao_2668	XP_017978156.1; XP_017979233.1	889; 889	Pfam	PF13855, PF18052, PF00931; PF13855, PF00931, PF18052	Leucine rich repeat, Rx N-terminal domain, NB-ARC domain; Leucine rich repeat, NB-ARC domain, Rx N-terminal domain	IPR001611, IPR041118, IPR002182; IPR001611, IPR002182, IPR041118	Leucine-rich repeat, Rx, N-terminal, NB-ARC; Leucine-rich repeat, NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_2669	XP_017978158.1; XP_017978417.1; XP_017978419.1; XP_017978219.1	939; 939; 939; 936	Pfam	PF14299, PF03107; PF03107, PF14299; PF03107, PF14299; PF03107, PF14299	Phloem protein 2, C1 domain; C1 domain, Phloem protein 2; C1 domain, Phloem protein 2; C1 domain, Phloem protein 2	IPR025886, IPR004146; IPR004146, IPR025886; IPR004146, IPR025886; IPR004146, IPR025886	Phloem protein 2-like, DC1; DC1, Phloem protein 2-like; DC1, Phloem protein 2-like; DC1, Phloem protein 2-like
hsd_id_Theobroma_cacao_2670	XP_017978166.1; XP_017980340.1	704; 699	Pfam	PF13968, PF04578; PF13968, PF04578	Domain of unknown function (DUF4220), Protein of unknown function, DUF594; Domain of unknown function (DUF4220), Protein of unknown function, DUF594	IPR025315, IPR007658; IPR025315, IPR007658	Domain of unknown function DUF4220, Protein of unknown function DUF594; Domain of unknown function DUF4220, Protein of unknown function DUF594
hsd_id_Theobroma_cacao_2671	XP_017978192.1; XP_017979088.1	908; 938	Pfam	PF01094, PF00060, PF00497; PF00497, PF01094, PF00060	Receptor family ligand binding region, Ligand-gated ion channel, Bacterial extracellular solute-binding proteins, family 3; Bacterial extracellular solute-binding proteins, family 3, Receptor family ligand binding region, Ligand-gated ion channel	IPR001828, IPR001320, IPR001638; IPR001638, IPR001828, IPR001320	Receptor, ligand binding region, Ionotropic glutamate receptor, Solute-binding protein  family 3/N-terminal domain of MltF; Solute-binding protein  family 3/N-terminal domain of MltF, Receptor, ligand binding region, Ionotropic glutamate receptor
hsd_id_Theobroma_cacao_2672	XP_017978194.1; XP_017982554.1	272; 261	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2673	XP_017978222.1; XP_017978488.1	200; 202	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2674	XP_017978223.1; XP_017978224.1; XP_017979816.1	639; 656; 603	Pfam	PF04578, PF13968; PF13968, PF04578; PF04578, PF13968	Protein of unknown function, DUF594, Domain of unknown function (DUF4220); Domain of unknown function (DUF4220), Protein of unknown function, DUF594; Protein of unknown function, DUF594, Domain of unknown function (DUF4220)	IPR007658, IPR025315; IPR025315, IPR007658; IPR007658, IPR025315	Protein of unknown function DUF594, Domain of unknown function DUF4220; Domain of unknown function DUF4220, Protein of unknown function DUF594; Protein of unknown function DUF594, Domain of unknown function DUF4220
hsd_id_Theobroma_cacao_2675	XP_017978234.1; XP_017978839.1; XP_017978860.1	1224; 1233; 1225	Pfam	PF01582, PF00931; PF00931, PF01582; PF00931, PF01582	TIR domain, NB-ARC domain; NB-ARC domain, TIR domain; NB-ARC domain, TIR domain	IPR000157, IPR002182; IPR002182, IPR000157; IPR002182, IPR000157	Toll/interleukin-1 receptor homology (TIR) domain, NB-ARC; NB-ARC, Toll/interleukin-1 receptor homology (TIR) domain; NB-ARC, Toll/interleukin-1 receptor homology (TIR) domain
hsd_id_Theobroma_cacao_2676	XP_017978266.1; XP_017982315.1	145; 146	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2677	XP_017978278.1; XP_017984281.1	654; 656	Pfam	PF00098, PF03732; PF00098, PF03732	Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein	IPR001878, IPR005162; IPR001878, IPR005162	Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain
hsd_id_Theobroma_cacao_2678	XP_017978287.1; XP_017982307.1	146; 143	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2679	XP_017978292.1; XP_017982389.1	356; 282	Pfam	PF00232; PF00232	Glycosyl hydrolase family 1; Glycosyl hydrolase family 1	IPR001360; IPR001360	Glycoside hydrolase family 1; Glycoside hydrolase family 1
hsd_id_Theobroma_cacao_2680	XP_017978343.1; XP_017978344.1	378; 365	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_2681	XP_017978511.1; XP_017983143.1	370; 278	Pfam	PF02153; PF02153	Prephenate dehydrogenase; Prephenate dehydrogenase	IPR003099; IPR003099	Prephenate dehydrogenase; Prephenate dehydrogenase
hsd_id_Theobroma_cacao_2682	XP_017978594.1; XP_017978595.1	164; 164	Pfam	PF08615; PF08615	Ribonuclease H2 non-catalytic subunit (Ylr154p-like); Ribonuclease H2 non-catalytic subunit (Ylr154p-like)	IPR013924; IPR013924	Ribonuclease H2, subunit C; Ribonuclease H2, subunit C
hsd_id_Theobroma_cacao_2683	XP_017978598.1; XP_017978599.1	384; 381	Pfam	PF00646; PF00646	F-box domain; F-box domain	IPR001810; IPR001810	F-box domain; F-box domain
hsd_id_Theobroma_cacao_2684	XP_017978624.1; XP_017978626.1; XP_017978627.1; XP_017978628.1	304; 280; 255; 220	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_2685	XP_017978638.1; XP_017975009.1; XP_017975355.1; XP_007032808.2; XP_017974756.1; XP_017975060.1; XP_007009602.2; XP_007033491.1; XP_017974759.1; XP_007032832.2; XP_017982637.1; XP_007035799.2; XP_007030540.2; XP_017974757.1; XP_017980492.1; XP_017984705.1; XP_007038795.2; XP_017970878.1; XP_007047405.2; XP_007047406.2; XP_017969778.1; XP_017969694.1; XP_017970557.1	846; 867; 888; 910; 894; 888; 822; 892; 839; 807; 832; 855; 858; 884; 842; 849; 848; 874; 843; 847; 838; 837; 869	Pfam	PF12819, PF07714; PF07714, PF12819; PF07714, PF12819; PF07714, PF12819; PF12819, PF07714; PF12819, PF07714; PF07714, PF12819; PF07714, PF12819; PF12819, PF07714; PF07714, PF12819; PF12819, PF07714; PF07714, PF12819; PF12819, PF07714; PF12819, PF07714; PF07714, PF12819; PF12819, PF07714; PF12819, PF07714; PF12819, PF07714; PF07714, PF12819; PF12819, PF07714; PF07714, PF12819; PF07714, PF12819; PF07714, PF12819	Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Malectin-like domain, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Protein tyrosine and serine/threonine kinase, Malectin-like domain; Protein tyrosine and serine/threonine kinase, Malectin-like domain	IPR024788, IPR001245; IPR001245, IPR024788; IPR001245, IPR024788; IPR001245, IPR024788; IPR024788, IPR001245; IPR024788, IPR001245; IPR001245, IPR024788; IPR001245, IPR024788; IPR024788, IPR001245; IPR001245, IPR024788; IPR024788, IPR001245; IPR001245, IPR024788; IPR024788, IPR001245; IPR024788, IPR001245; IPR001245, IPR024788; IPR024788, IPR001245; IPR024788, IPR001245; IPR024788, IPR001245; IPR001245, IPR024788; IPR024788, IPR001245; IPR001245, IPR024788; IPR001245, IPR024788; IPR001245, IPR024788	Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Malectin-like domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Malectin-like domain
hsd_id_Theobroma_cacao_2686	XP_017978675.1; XP_017978904.1	479; 494	Pfam	PF00067; PF00067	Cytochrome P450; Cytochrome P450	IPR001128; IPR001128	Cytochrome P450; Cytochrome P450
hsd_id_Theobroma_cacao_2687	XP_017978696.1; XP_017981868.1	469; 464	Pfam	PF02458; PF02458	Transferase family; Transferase family	IPR003480; IPR003480	Transferase; Transferase
hsd_id_Theobroma_cacao_2688	XP_017978720.1; XP_017976623.1	59; 63	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2689	XP_017978741.1; XP_017978742.1	325; 325	Pfam	PF08240, PF00107; PF08240, PF00107	Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain, Zinc-binding dehydrogenase	IPR013154, IPR013149; IPR013154, IPR013149	Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase, N-terminal, Alcohol dehydrogenase, C-terminal
hsd_id_Theobroma_cacao_2690	XP_017978792.1; XP_017983678.1	417; 458	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2691	XP_017978857.1; XP_017983754.1	394; 395	Pfam	PF00155; PF00155	Aminotransferase class I and II; Aminotransferase class I and II	IPR004839; IPR004839	Aminotransferase, class I/classII; Aminotransferase, class I/classII
hsd_id_Theobroma_cacao_2692	XP_017978888.1; XP_017982693.1; XP_007027336.2; XP_007009852.2	749; 716; 709; 686	Pfam	PF02362, PF06507; PF02362, PF06507; PF06507, PF02362; PF06507, PF02362	B3 DNA binding domain, Auxin response factor; B3 DNA binding domain, Auxin response factor; Auxin response factor, B3 DNA binding domain; Auxin response factor, B3 DNA binding domain	IPR003340, IPR010525; IPR003340, IPR010525; IPR010525, IPR003340; IPR010525, IPR003340	B3 DNA binding domain, Auxin response factor domain; B3 DNA binding domain, Auxin response factor domain; Auxin response factor domain, B3 DNA binding domain; Auxin response factor domain, B3 DNA binding domain
hsd_id_Theobroma_cacao_2693	XP_017978891.1; XP_017982692.1	782; 852	Pfam	PF04499; PF04499	SIT4 phosphatase-associated protein; SIT4 phosphatase-associated protein	IPR007587; IPR007587	SIT4 phosphatase-associated protein family; SIT4 phosphatase-associated protein family
hsd_id_Theobroma_cacao_2694	XP_017978918.1; XP_017983600.1	363; 361	Pfam	PF00481; PF00481	Protein phosphatase 2C; Protein phosphatase 2C	IPR001932; IPR001932	PPM-type phosphatase domain; PPM-type phosphatase domain
hsd_id_Theobroma_cacao_2695	XP_017978949.1; XP_017984022.1; XP_017984001.1; XP_017983920.1	809; 808; 824; 829	Pfam	PF12357, PF00614, PF00168; PF00168, PF00614, PF12357; PF00168, PF12357, PF00614; PF00168, PF12357, PF00614	Phospholipase D C terminal, Phospholipase D Active site motif, C2 domain; C2 domain, Phospholipase D Active site motif, Phospholipase D C terminal; C2 domain, Phospholipase D C terminal, Phospholipase D Active site motif; C2 domain, Phospholipase D C terminal, Phospholipase D Active site motif	IPR024632, IPR001736, IPR000008; IPR000008, IPR001736, IPR024632; IPR000008, IPR024632, IPR001736; IPR000008, IPR024632, IPR001736	Phospholipase D, C-terminal, Phospholipase D/Transphosphatidylase, C2 domain; C2 domain, Phospholipase D/Transphosphatidylase, Phospholipase D, C-terminal; C2 domain, Phospholipase D, C-terminal, Phospholipase D/Transphosphatidylase; C2 domain, Phospholipase D, C-terminal, Phospholipase D/Transphosphatidylase
hsd_id_Theobroma_cacao_2696	XP_017978957.1; XP_017981904.1	138; 138	Pfam	PF01248; PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	IPR004038; IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45; Ribosomal protein L7Ae/L30e/S12e/Gadd45
hsd_id_Theobroma_cacao_2697	XP_017978971.1; XP_017983059.1	578; 578	Pfam	PF13855, PF13516; PF13855, PF13516	Leucine rich repeat, Leucine Rich repeat; Leucine rich repeat, Leucine Rich repeat	IPR001611, IPR001611; IPR001611, IPR001611	Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat
hsd_id_Theobroma_cacao_2698	XP_017978987.1; XP_017983108.1	1838; 1842	Pfam	PF01504, PF01363, PF00118; PF01363, PF01504, PF00118	Phosphatidylinositol-4-phosphate 5-Kinase, FYVE zinc finger, TCP-1/cpn60 chaperonin family; FYVE zinc finger, Phosphatidylinositol-4-phosphate 5-Kinase, TCP-1/cpn60 chaperonin family	IPR002498, IPR000306, IPR002423; IPR000306, IPR002498, IPR002423	Phosphatidylinositol-4-phosphate 5-kinase, core, FYVE zinc finger, Chaperonin Cpn60/TCP-1 family; FYVE zinc finger, Phosphatidylinositol-4-phosphate 5-kinase, core, Chaperonin Cpn60/TCP-1 family
hsd_id_Theobroma_cacao_2699	XP_017979007.1; XP_017979010.1; XP_017979009.1	585; 583; 584	Pfam	PF03936, PF01397; PF03936, PF01397; PF03936, PF01397	Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain; Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain; Terpene synthase family, metal binding domain, Terpene synthase, N-terminal domain	IPR005630, IPR001906; IPR005630, IPR001906; IPR005630, IPR001906	Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain; Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain; Terpene synthase, metal-binding domain, Terpene synthase, N-terminal domain
hsd_id_Theobroma_cacao_2700	XP_017979065.1; XP_017980654.1	607; 603	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2701	XP_017979082.1; XP_017983822.1; XP_017979204.1; XP_017983554.1	838; 839; 857; 844	Pfam	PF00046, PF01852, PF08670; PF08670, PF00046, PF01852; PF08670, PF01852, PF00046; PF08670, PF01852, PF00046	Homeodomain, START domain, MEKHLA domain; MEKHLA domain, Homeodomain, START domain; MEKHLA domain, START domain, Homeodomain; MEKHLA domain, START domain, Homeodomain	IPR001356, IPR002913, IPR013978; IPR013978, IPR001356, IPR002913; IPR013978, IPR002913, IPR001356; IPR013978, IPR002913, IPR001356	Homeobox domain, START domain, MEKHLA; MEKHLA, Homeobox domain, START domain; MEKHLA, START domain, Homeobox domain; MEKHLA, START domain, Homeobox domain
hsd_id_Theobroma_cacao_2702	XP_017979095.1; XP_017982834.1	434; 434	Pfam	PF02799, PF01233; PF01233, PF02799	Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain, Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain, Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain	IPR022677, IPR022676; IPR022676, IPR022677	Myristoyl-CoA:protein N-myristoyltransferase, C-terminal, Myristoyl-CoA:protein N-myristoyltransferase, N-terminal; Myristoyl-CoA:protein N-myristoyltransferase, N-terminal, Myristoyl-CoA:protein N-myristoyltransferase, C-terminal
hsd_id_Theobroma_cacao_2703	XP_017979103.1; XP_017983961.1	397; 420	Pfam	PF00154; PF00154	recA bacterial DNA recombination protein; recA bacterial DNA recombination protein	IPR013765; IPR013765	DNA recombination and repair protein RecA; DNA recombination and repair protein RecA
hsd_id_Theobroma_cacao_2704	XP_017979190.1; XP_017983854.1	557; 567	Pfam	PF01532; PF01532	Glycosyl hydrolase family 47; Glycosyl hydrolase family 47	IPR001382; IPR001382	Glycoside hydrolase family 47; Glycoside hydrolase family 47
hsd_id_Theobroma_cacao_2705	XP_017979216.1; XP_017979474.1	439; 474	Pfam	PF00109, PF02801; PF02801, PF00109	Beta-ketoacyl synthase, N-terminal domain, Beta-ketoacyl synthase, C-terminal domain; Beta-ketoacyl synthase, C-terminal domain, Beta-ketoacyl synthase, N-terminal domain	IPR014030, IPR014031; IPR014031, IPR014030	Beta-ketoacyl synthase, N-terminal, Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, C-terminal, Beta-ketoacyl synthase, N-terminal
hsd_id_Theobroma_cacao_2706	XP_017979250.1; XP_017980732.1	473; 475	Pfam	PF07983, PF00332; PF07983, PF00332	X8 domain, Glycosyl hydrolases family 17; X8 domain, Glycosyl hydrolases family 17	IPR012946, IPR000490; IPR012946, IPR000490	X8 domain, Glycoside hydrolase family 17; X8 domain, Glycoside hydrolase family 17
hsd_id_Theobroma_cacao_2707	XP_017979429.1; XP_017983922.1	346; 352	Pfam	PF00153; PF00153	Mitochondrial carrier protein; Mitochondrial carrier protein	IPR018108; IPR018108	Mitochondrial substrate/solute carrier; Mitochondrial substrate/solute carrier
hsd_id_Theobroma_cacao_2708	XP_017979450.1; XP_017980872.1	612; 593	Pfam	PF00854; PF00854	POT family; POT family	IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_2709	XP_017979520.1; XP_017982584.1	770; 794	Pfam	PF02225, PF17766, PF00082, PF05922; PF00082, PF17766, PF02225, PF05922	PA domain, Fibronectin type-III domain, Subtilase family, Peptidase inhibitor I9; Subtilase family, Fibronectin type-III domain, PA domain, Peptidase inhibitor I9	IPR003137, IPR041469, IPR000209, IPR010259; IPR000209, IPR041469, IPR003137, IPR010259	PA domain, Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9; Peptidase S8/S53 domain, Subtilisin-like protease, fibronectin type-III domain, PA domain, Peptidase S8 propeptide/proteinase inhibitor I9
hsd_id_Theobroma_cacao_2710	XP_017979540.1; XP_017979734.1; XP_017979735.1	922; 926; 925	Pfam	PF11145; PF11145; PF11145	Protein of unknown function (DUF2921); Protein of unknown function (DUF2921); Protein of unknown function (DUF2921)	IPR021319; IPR021319; IPR021319	Protein of unknown function DUF2921; Protein of unknown function DUF2921; Protein of unknown function DUF2921
hsd_id_Theobroma_cacao_2711	XP_017979583.1; XP_017980616.1; XP_017982715.1	358; 347; 334	Pfam	PF02535; PF02535; PF02535	ZIP Zinc transporter; ZIP Zinc transporter; ZIP Zinc transporter	IPR003689; IPR003689; IPR003689	Zinc/iron permease; Zinc/iron permease; Zinc/iron permease
hsd_id_Theobroma_cacao_2712	XP_017979606.1; XP_017979607.1; XP_017979608.1; XP_017979609.1	365; 362; 365; 366	Pfam	PF03171, PF14226; PF14226, PF03171; PF14226, PF03171; PF14226, PF03171	2OG-Fe(II) oxygenase superfamily, non-haem dioxygenase in morphine synthesis N-terminal; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily; non-haem dioxygenase in morphine synthesis N-terminal, 2OG-Fe(II) oxygenase superfamily	IPR044861, IPR026992; IPR026992, IPR044861; IPR026992, IPR044861; IPR026992, IPR044861	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain, Non-haem dioxygenase N-terminal domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain; Non-haem dioxygenase N-terminal domain, Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain
hsd_id_Theobroma_cacao_2713	XP_017979623.1; XP_017985268.1; XP_017984223.1	362; 304; 302	Pfam	PF14111; PF14111; PF14111	Domain of unknown function (DUF4283); Domain of unknown function (DUF4283); Domain of unknown function (DUF4283)	IPR025558; IPR025558; IPR025558	Domain of unknown function DUF4283; Domain of unknown function DUF4283; Domain of unknown function DUF4283
hsd_id_Theobroma_cacao_2714	XP_017979638.1; XP_017985305.1	565; 538	Pfam	PF13855, PF08263; PF08263, PF13855	Leucine rich repeat, Leucine rich repeat N-terminal domain; Leucine rich repeat N-terminal domain, Leucine rich repeat	IPR001611, IPR013210; IPR013210, IPR001611	Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat
hsd_id_Theobroma_cacao_2715	XP_017979662.1; XP_017980206.1	913; 921	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2716	XP_017979664.1; XP_017980144.1	1023; 1052	Pfam	PF00931; PF00931	NB-ARC domain; NB-ARC domain	IPR002182; IPR002182	NB-ARC; NB-ARC
hsd_id_Theobroma_cacao_2717	XP_017979667.1; XP_017979668.1	2247; 2176	Pfam	PF00931; PF00931	NB-ARC domain; NB-ARC domain	IPR002182; IPR002182	NB-ARC; NB-ARC
hsd_id_Theobroma_cacao_2718	XP_017979703.1; XP_017980517.1; XP_017985379.1; XP_017985374.1; XP_017985371.1	530; 528; 534; 534; 494	Pfam	PF00161; PF00161; PF00161; PF00161; PF00161	Ribosome inactivating protein; Ribosome inactivating protein; Ribosome inactivating protein; Ribosome inactivating protein; Ribosome inactivating protein	IPR001574; IPR001574; IPR001574; IPR001574; IPR001574	Ribosome-inactivating protein; Ribosome-inactivating protein; Ribosome-inactivating protein; Ribosome-inactivating protein; Ribosome-inactivating protein
hsd_id_Theobroma_cacao_2719	XP_017979704.1; XP_017980557.1; XP_017979715.1	1615; 1521; 1659	Pfam	PF01453, PF00954, PF08276, PF07714, PF11883; PF08276, PF00954, PF01453, PF07714, PF11883; PF01453, PF11883, PF08276, PF00954, PF07714	D-mannose binding lectin, S-locus glycoprotein domain, PAN-like domain, Protein tyrosine and serine/threonine kinase, Domain of unknown function (DUF3403); PAN-like domain, S-locus glycoprotein domain, D-mannose binding lectin, Protein tyrosine and serine/threonine kinase, Domain of unknown function (DUF3403); D-mannose binding lectin, Domain of unknown function (DUF3403), PAN-like domain, S-locus glycoprotein domain, Protein tyrosine and serine/threonine kinase	IPR001480, IPR000858, IPR003609, IPR001245, IPR021820; IPR003609, IPR000858, IPR001480, IPR001245, IPR021820; IPR001480, IPR021820, IPR003609, IPR000858, IPR001245	Bulb-type lectin domain, S-locus glycoprotein domain, PAN/Apple domain, Serine-threonine/tyrosine-protein kinase, catalytic domain, S-locus receptor kinase, C-terminal; PAN/Apple domain, S-locus glycoprotein domain, Bulb-type lectin domain, Serine-threonine/tyrosine-protein kinase, catalytic domain, S-locus receptor kinase, C-terminal; Bulb-type lectin domain, S-locus receptor kinase, C-terminal, PAN/Apple domain, S-locus glycoprotein domain, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2720	XP_017979710.1; XP_017980530.1	342; 342	Pfam	PF06830; PF06830	Root cap; Root cap	IPR009646; IPR009646	Root cap; Root cap
hsd_id_Theobroma_cacao_2721	XP_017979711.1; XP_017979714.1	349; 276	Pfam	PF00931; PF00931	NB-ARC domain; NB-ARC domain	IPR002182; IPR002182	NB-ARC; NB-ARC
hsd_id_Theobroma_cacao_2722	XP_017979729.1; XP_017979730.1	149; 142	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2723	XP_017979732.1; XP_017979733.1	912; 951	Pfam	PF11145; PF11145	Protein of unknown function (DUF2921); Protein of unknown function (DUF2921)	IPR021319; IPR021319	Protein of unknown function DUF2921; Protein of unknown function DUF2921
hsd_id_Theobroma_cacao_2724	XP_017979742.1; XP_017980005.1	190; 283	Pfam	PF11282; PF11282	Protein of unknown function (DUF3082); Protein of unknown function (DUF3082)	IPR021434; IPR021434	Protein of unknown function DUF3082; Protein of unknown function DUF3082
hsd_id_Theobroma_cacao_2725	XP_017979744.1; XP_017979745.1	410; 313	Pfam	PF14929; PF14929	TAF RNA Polymerase I subunit A; TAF RNA Polymerase I subunit A	IPR039495; IPR039495	TATA box-binding protein-associated factor RNA polymerase I subunit A-like; TATA box-binding protein-associated factor RNA polymerase I subunit A-like
hsd_id_Theobroma_cacao_2726	XP_017979769.1; XP_017979775.1	999; 998	Pfam	PF00560, PF08263, PF13855; PF00560, PF13855, PF08263	Leucine Rich Repeat, Leucine rich repeat N-terminal domain, Leucine rich repeat; Leucine Rich Repeat, Leucine rich repeat, Leucine rich repeat N-terminal domain	IPR001611, IPR013210, IPR001611; IPR001611, IPR001611, IPR013210	Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type
hsd_id_Theobroma_cacao_2727	XP_017979774.1; XP_017980085.1	126; 161	Pfam	PF08263; PF08263	Leucine rich repeat N-terminal domain; Leucine rich repeat N-terminal domain	IPR013210; IPR013210	Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat-containing N-terminal, plant-type
hsd_id_Theobroma_cacao_2728	XP_017979782.1; XP_017979783.1	66; 65	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2729	XP_017979852.1; XP_017980980.1	345; 341	Pfam	PF07727; PF07727	Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase)	IPR013103; IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase
hsd_id_Theobroma_cacao_2730	XP_017979898.1; XP_017985377.1; XP_017980628.1	230; 325; 240	Pfam	PF00931; PF00931; PF00931	NB-ARC domain; NB-ARC domain; NB-ARC domain	IPR002182; IPR002182; IPR002182	NB-ARC; NB-ARC; NB-ARC
hsd_id_Theobroma_cacao_2731	XP_017979907.1; XP_017984315.1	199; 193	Pfam	PF14223; PF14223	gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type	-; -	-; -
hsd_id_Theobroma_cacao_2732	XP_017979992.1; XP_017984682.1	529; 550	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2733	XP_017980031.1; XP_017985245.1	192; 196	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2734	XP_017980048.1; XP_017985346.1	498; 523	Pfam	PF00083; PF00083	Sugar (and other) transporter; Sugar (and other) transporter	IPR005828; IPR005828	Major facilitator,  sugar transporter-like; Major facilitator,  sugar transporter-like
hsd_id_Theobroma_cacao_2735	XP_017980082.1; XP_017980083.1; XP_017980084.1	457; 457; 394	Pfam	PF14655; PF14655; PF14655	Rab3 GTPase-activating protein regulatory subunit N-terminus; Rab3 GTPase-activating protein regulatory subunit N-terminus; Rab3 GTPase-activating protein regulatory subunit N-terminus	IPR032839; IPR032839; IPR032839	Rab3-GAP regulatory subunit, N-terminal; Rab3-GAP regulatory subunit, N-terminal; Rab3-GAP regulatory subunit, N-terminal
hsd_id_Theobroma_cacao_2736	XP_017980115.1; XP_017984206.1	362; 415	Pfam	PF13962; PF13962	Domain of unknown function; Domain of unknown function	IPR026961; IPR026961	PGG domain; PGG domain
hsd_id_Theobroma_cacao_2737	XP_017980120.1; XP_017983413.1; XP_007018117.1	178; 185; 193	Pfam	PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2738	XP_017980234.1; XP_017983276.1	1035; 1043	Pfam	PF03552, PF14569; PF14569, PF03552	Cellulose synthase, Zinc-binding RING-finger; Zinc-binding RING-finger, Cellulose synthase	IPR005150, IPR027934; IPR027934, IPR005150	Cellulose synthase, Cellulose synthase, RING-type zinc finger; Cellulose synthase, RING-type zinc finger, Cellulose synthase
hsd_id_Theobroma_cacao_2739	XP_017980281.1; XP_017984140.1; XP_017984612.1	1403; 1405; 1414	Pfam	PF00931, PF18052; PF00931, PF18052; PF18052, PF00931	NB-ARC domain, Rx N-terminal domain; NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain	IPR002182, IPR041118; IPR002182, IPR041118; IPR041118, IPR002182	NB-ARC, Rx, N-terminal; NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC
hsd_id_Theobroma_cacao_2740	XP_017980321.1; XP_007047805.2	1000; 941	Pfam	PF01753, PF00443; PF01753, PF00443	MYND finger, Ubiquitin carboxyl-terminal hydrolase; MYND finger, Ubiquitin carboxyl-terminal hydrolase	IPR002893, IPR001394; IPR002893, IPR001394	Zinc finger, MYND-type, Peptidase C19, ubiquitin carboxyl-terminal hydrolase; Zinc finger, MYND-type, Peptidase C19, ubiquitin carboxyl-terminal hydrolase
hsd_id_Theobroma_cacao_2741	XP_017980421.1; XP_017980423.1	401; 401	Pfam	PF00657; PF00657	GDSL-like Lipase/Acylhydrolase; GDSL-like Lipase/Acylhydrolase	IPR001087; IPR001087	GDSL lipase/esterase; GDSL lipase/esterase
hsd_id_Theobroma_cacao_2742	XP_017980497.1; XP_017985302.1	822; 831	Pfam	PF00954, PF01453, PF08276, PF11883, PF07714; PF00954, PF07714, PF11883, PF08276, PF01453	S-locus glycoprotein domain, D-mannose binding lectin, PAN-like domain, Domain of unknown function (DUF3403), Protein tyrosine and serine/threonine kinase; S-locus glycoprotein domain, Protein tyrosine and serine/threonine kinase, Domain of unknown function (DUF3403), PAN-like domain, D-mannose binding lectin	IPR000858, IPR001480, IPR003609, IPR021820, IPR001245; IPR000858, IPR001245, IPR021820, IPR003609, IPR001480	S-locus glycoprotein domain, Bulb-type lectin domain, PAN/Apple domain, S-locus receptor kinase, C-terminal, Serine-threonine/tyrosine-protein kinase, catalytic domain; S-locus glycoprotein domain, Serine-threonine/tyrosine-protein kinase, catalytic domain, S-locus receptor kinase, C-terminal, PAN/Apple domain, Bulb-type lectin domain
hsd_id_Theobroma_cacao_2743	XP_017980617.1; XP_017984985.1	795; 798	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2744	XP_017980637.1; XP_017980639.1; XP_017980704.1	997; 972; 980	Pfam	PF13855, PF00931; PF00931, PF13855; PF00931, PF13855	Leucine rich repeat, NB-ARC domain; NB-ARC domain, Leucine rich repeat; NB-ARC domain, Leucine rich repeat	IPR001611, IPR002182; IPR002182, IPR001611; IPR002182, IPR001611	Leucine-rich repeat, NB-ARC; NB-ARC, Leucine-rich repeat; NB-ARC, Leucine-rich repeat
hsd_id_Theobroma_cacao_2745	XP_017980870.1; XP_017981838.1	616; 583	Pfam	PF04784, PF14389; PF14389, PF04784	Protein of unknown function, DUF547, Leucine-zipper of ternary complex factor MIP1; Leucine-zipper of ternary complex factor MIP1, Protein of unknown function, DUF547	IPR006869, IPR025757; IPR025757, IPR006869	Domain of unknown function DUF547, Ternary complex factor MIP1, leucine-zipper; Ternary complex factor MIP1, leucine-zipper, Domain of unknown function DUF547
hsd_id_Theobroma_cacao_2746	XP_017980897.1; XP_017983076.1; XP_017983739.1	279; 318; 315	Pfam	PF00642, PF00076; PF00076, PF00642; PF00642, PF00076	Zinc finger C-x8-C-x5-C-x3-H type (and similar), RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar), RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000571, IPR000504; IPR000504, IPR000571; IPR000571, IPR000504	Zinc finger, CCCH-type, RNA recognition motif domain; RNA recognition motif domain, Zinc finger, CCCH-type; Zinc finger, CCCH-type, RNA recognition motif domain
hsd_id_Theobroma_cacao_2747	XP_017980965.1; XP_017980966.1	577; 581	Pfam	PF16135; PF16135	Tify domain binding domain; Tify domain binding domain	IPR032308; IPR032308	Jas TPL-binding domain; Jas TPL-binding domain
hsd_id_Theobroma_cacao_2748	XP_017980988.1; XP_017984329.1	296; 297	Pfam	PF10551; PF10551	MULE transposase domain; MULE transposase domain	IPR018289; IPR018289	MULE transposase domain; MULE transposase domain
hsd_id_Theobroma_cacao_2749	XP_017980994.1; XP_017981034.1	629; 618	Pfam	PF00078, PF13456; PF00078, PF13456	Reverse transcriptase (RNA-dependent DNA polymerase), Reverse transcriptase-like; Reverse transcriptase (RNA-dependent DNA polymerase), Reverse transcriptase-like	IPR000477, IPR002156; IPR000477, IPR002156	Reverse transcriptase domain, Ribonuclease H domain; Reverse transcriptase domain, Ribonuclease H domain
hsd_id_Theobroma_cacao_2750	XP_017981045.1; XP_017981062.1	676; 671	Pfam	PF01061, PF00005, PF19055; PF00005, PF01061, PF19055	ABC-2 type transporter, ABC transporter, ABC-2 type transporter; ABC transporter, ABC-2 type transporter, ABC-2 type transporter	IPR013525, IPR003439, IPR043926; IPR003439, IPR013525, IPR043926	ABC-2 type transporter, ABC transporter-like, ATP-binding domain, ABC transporter family G domain; ABC transporter-like, ATP-binding domain, ABC-2 type transporter, ABC transporter family G domain
hsd_id_Theobroma_cacao_2751	XP_017981048.1; XP_017977005.1	805; 808	Pfam	PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_2752	XP_017981290.1; XP_017983343.1	154; 197	Pfam	PF01883; PF01883	Iron-sulfur cluster assembly protein; Iron-sulfur cluster assembly protein	IPR002744; IPR002744	MIP18 family-like; MIP18 family-like
hsd_id_Theobroma_cacao_2753	XP_017981460.1; XP_017981707.1	451; 446	Pfam	PF00928; PF00928	Adaptor complexes medium subunit family; Adaptor complexes medium subunit family	IPR028565; IPR028565	Mu homology domain; Mu homology domain
hsd_id_Theobroma_cacao_2754	XP_017981671.1; XP_007024976.2	559; 495	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2755	XP_017981829.1; XP_017981830.1	239; 152	Pfam	PF13462; PF13462	Thioredoxin; Thioredoxin	IPR012336; IPR012336	Thioredoxin-like fold; Thioredoxin-like fold
hsd_id_Theobroma_cacao_2756	XP_017981908.1; XP_017982092.1	681; 734	Pfam	PF02153; PF02153	Prephenate dehydrogenase; Prephenate dehydrogenase	IPR003099; IPR003099	Prephenate dehydrogenase; Prephenate dehydrogenase
hsd_id_Theobroma_cacao_2757	XP_017981918.1; XP_007047070.2; XP_007015671.2; XP_007027983.2; XP_017981722.1; XP_007040323.2	841; 825; 732; 668; 684; 661	Pfam	PF05920, PF07526; PF07526, PF05920; PF05920, PF07526; PF07526, PF05920; PF05920, PF07526; PF07526, PF05920	Homeobox KN domain, Associated with HOX; Associated with HOX, Homeobox KN domain; Homeobox KN domain, Associated with HOX; Associated with HOX, Homeobox KN domain; Homeobox KN domain, Associated with HOX; Associated with HOX, Homeobox KN domain	IPR008422, IPR006563; IPR006563, IPR008422; IPR008422, IPR006563; IPR006563, IPR008422; IPR008422, IPR006563; IPR006563, IPR008422	Homeobox KN domain, POX domain; POX domain, Homeobox KN domain; Homeobox KN domain, POX domain; POX domain, Homeobox KN domain; Homeobox KN domain, POX domain; POX domain, Homeobox KN domain
hsd_id_Theobroma_cacao_2758	XP_017982047.1; XP_017982128.1	468; 465	Pfam	PF00201; PF00201	UDP-glucoronosyl and UDP-glucosyl transferase; UDP-glucoronosyl and UDP-glucosyl transferase	IPR002213; IPR002213	UDP-glucuronosyl/UDP-glucosyltransferase; UDP-glucuronosyl/UDP-glucosyltransferase
hsd_id_Theobroma_cacao_2759	XP_017982056.1; XP_017984194.1; XP_017981065.1; XP_017985286.1; XP_007027628.1	593; 564; 617; 569; 574	Pfam	PF13837; PF13837; PF13837; PF13837; PF13837	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR044822; IPR044822; IPR044822; IPR044822; IPR044822	Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4; Myb/SANT-like DNA-binding domain 4
hsd_id_Theobroma_cacao_2760	XP_017982111.1; XP_017982112.1	142; 155	Pfam	PF01627; PF01627	Hpt domain; Hpt domain	IPR008207; IPR008207	Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain
hsd_id_Theobroma_cacao_2761	XP_017982181.1; XP_017983435.1; XP_017982980.1; XP_017982920.1	550; 568; 559; 566	Pfam	PF00854; PF00854; PF00854; PF00854	POT family; POT family; POT family; POT family	IPR000109; IPR000109; IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_2762	XP_017982197.1; XP_017982254.1	368; 359	Pfam	PF00704; PF00704	Glycosyl hydrolases family 18; Glycosyl hydrolases family 18	IPR001223; IPR001223	Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain
hsd_id_Theobroma_cacao_2763	XP_017982229.1; XP_017982438.1	186; 186	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2764	XP_017982243.1; XP_017982201.1	327; 321	Pfam	PF04554; PF04554	Extensin-like region; Extensin-like region	IPR006706; IPR006706	Extensin domain; Extensin domain
hsd_id_Theobroma_cacao_2765	XP_017982269.1; XP_017982270.1	1006; 1000	Pfam	PF13855, PF00069, PF00560, PF08263; PF00069, PF13855, PF08263, PF00560	Leucine rich repeat, Protein kinase domain, Leucine Rich Repeat, Leucine rich repeat N-terminal domain; Protein kinase domain, Leucine rich repeat, Leucine rich repeat N-terminal domain, Leucine Rich Repeat	IPR001611, IPR000719, IPR001611, IPR013210; IPR000719, IPR001611, IPR013210, IPR001611	Leucine-rich repeat, Protein kinase domain, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type; Protein kinase domain, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat
hsd_id_Theobroma_cacao_2766	XP_017982294.1; XP_017982977.1	78; 78	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2767	XP_017982295.1; XP_017985264.1; XP_017983305.1	437; 427; 454	Pfam	PF14541, PF14543; PF14543, PF14541; PF14541, PF14543	Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal; Xylanase inhibitor N-terminal, Xylanase inhibitor C-terminal; Xylanase inhibitor C-terminal, Xylanase inhibitor N-terminal	IPR032799, IPR032861; IPR032861, IPR032799; IPR032799, IPR032861	Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal; Xylanase inhibitor, N-terminal, Xylanase inhibitor, C-terminal; Xylanase inhibitor, C-terminal, Xylanase inhibitor, N-terminal
hsd_id_Theobroma_cacao_2768	XP_017982309.1; XP_017982351.1	217; 225	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2769	XP_017982352.1; XP_017982573.1	217; 211	Pfam	PF12776; PF12776	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR024752; IPR024752	Myb/SANT-like domain; Myb/SANT-like domain
hsd_id_Theobroma_cacao_2770	XP_017982357.1; XP_017980967.1	425; 386	Pfam	PF14223; PF14223	gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type	-; -	-; -
hsd_id_Theobroma_cacao_2771	XP_017982377.1; XP_017983270.1	318; 289	Pfam	PF01209; PF01209	ubiE/COQ5 methyltransferase family; ubiE/COQ5 methyltransferase family	IPR004033; IPR004033	UbiE/COQ5 methyltransferase; UbiE/COQ5 methyltransferase
hsd_id_Theobroma_cacao_2772	XP_017982381.1; XP_017982392.1	276; 231	Pfam	PF14223; PF14223	gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type	-; -	-; -
hsd_id_Theobroma_cacao_2773	XP_017982388.1; XP_017982555.1	539; 512	Pfam	PF00854; PF00854	POT family; POT family	IPR000109; IPR000109	Proton-dependent oligopeptide transporter family; Proton-dependent oligopeptide transporter family
hsd_id_Theobroma_cacao_2774	XP_017982608.1; XP_017983162.1	1164; 1125	Pfam	PF00899, PF09358, PF16190, PF16191, PF10585; PF09358, PF16190, PF16191, PF00899, PF10585	ThiF family, Ubiquitin fold domain, Ubiquitin-activating enzyme E1 FCCH domain, Ubiquitin-activating enzyme E1 four-helix bundle, Ubiquitin-activating enzyme active site; Ubiquitin fold domain, Ubiquitin-activating enzyme E1 FCCH domain, Ubiquitin-activating enzyme E1 four-helix bundle, ThiF family, Ubiquitin-activating enzyme active site	IPR000594, IPR018965, IPR032418, IPR032420, IPR019572; IPR018965, IPR032418, IPR032420, IPR000594, IPR019572	THIF-type NAD/FAD binding fold, Ubiquitin-activating enzyme E1, C-terminal, Ubiquitin-activating enzyme E1, FCCH domain, Ubiquitin-activating enzyme E1, four-helix bundle, Ubiquitin-activating enzyme, SCCH domain; Ubiquitin-activating enzyme E1, C-terminal, Ubiquitin-activating enzyme E1, FCCH domain, Ubiquitin-activating enzyme E1, four-helix bundle, THIF-type NAD/FAD binding fold, Ubiquitin-activating enzyme, SCCH domain
hsd_id_Theobroma_cacao_2775	XP_017982723.1; XP_017982791.1	649; 645	Pfam	PF13516, PF00646; PF00646, PF13516	Leucine Rich repeat, F-box domain; F-box domain, Leucine Rich repeat	IPR001611, IPR001810; IPR001810, IPR001611	Leucine-rich repeat, F-box domain; F-box domain, Leucine-rich repeat
hsd_id_Theobroma_cacao_2776	XP_017982824.1; XP_017983606.1	224; 218	Pfam	PF04117; PF04117	Mpv17 / PMP22 family; Mpv17 / PMP22 family	IPR007248; IPR007248	Mpv17/PMP22; Mpv17/PMP22
hsd_id_Theobroma_cacao_2777	XP_017983013.1; XP_017984120.1	596; 580	Pfam	PF00425, PF04715; PF04715, PF00425	chorismate binding enzyme, Anthranilate synthase component I, N terminal region; Anthranilate synthase component I, N terminal region, chorismate binding enzyme	IPR015890, IPR006805; IPR006805, IPR015890	Chorismate-utilising enzyme, C-terminal, Anthranilate synthase component I, N-terminal; Anthranilate synthase component I, N-terminal, Chorismate-utilising enzyme, C-terminal
hsd_id_Theobroma_cacao_2778	XP_017983058.1; XP_017983966.1	712; 723	Pfam	PF00564; PF00564	PB1 domain; PB1 domain	IPR000270; IPR000270	PB1 domain; PB1 domain
hsd_id_Theobroma_cacao_2779	XP_017983446.1; XP_007026364.1	289; 275	Pfam	PF04739, PF16561; PF16561, PF04739	5'-AMP-activated protein kinase beta subunit, interaction domain, Glycogen recognition site of AMP-activated protein kinase; Glycogen recognition site of AMP-activated protein kinase, 5'-AMP-activated protein kinase beta subunit, interaction domain	IPR006828, IPR032640; IPR032640, IPR006828	Association with the SNF1 complex (ASC) domain, AMP-activated protein kinase, glycogen-binding domain; AMP-activated protein kinase, glycogen-binding domain, Association with the SNF1 complex (ASC) domain
hsd_id_Theobroma_cacao_2780	XP_017983530.1; XP_017984995.1	846; 866	Pfam	PF13920; PF13920	Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger)	-; -	-; -
hsd_id_Theobroma_cacao_2781	XP_017983566.1; XP_017985157.1	776; 735	Pfam	PF00169, PF07059, PF01852; PF07059, PF00169, PF01852	PH domain, Protein of unknown function (DUF1336), START domain; Protein of unknown function (DUF1336), PH domain, START domain	IPR001849, IPR009769, IPR002913; IPR009769, IPR001849, IPR002913	Pleckstrin homology domain, Protein ENHANCED DISEASE RESISTANCE 2, C-terminal, START domain; Protein ENHANCED DISEASE RESISTANCE 2, C-terminal, Pleckstrin homology domain, START domain
hsd_id_Theobroma_cacao_2782	XP_017983607.1; XP_017984581.1	700; 726	Pfam	PF00076, PF00642; PF00642, PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar), RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504, IPR000571; IPR000571, IPR000504	RNA recognition motif domain, Zinc finger, CCCH-type; Zinc finger, CCCH-type, RNA recognition motif domain
hsd_id_Theobroma_cacao_2783	XP_017983813.1; XP_017985279.1; XP_017969528.1; XP_017970922.1; XP_007042604.2	479; 476; 532; 478; 500	Pfam	PF13520; PF13520; PF13520; PF13520; PF13520	Amino acid permease; Amino acid permease; Amino acid permease; Amino acid permease; Amino acid permease	IPR002293; IPR002293; IPR002293; IPR002293; IPR002293	Amino acid/polyamine transporter I; Amino acid/polyamine transporter I; Amino acid/polyamine transporter I; Amino acid/polyamine transporter I; Amino acid/polyamine transporter I
hsd_id_Theobroma_cacao_2784	XP_017983824.1; XP_017983986.1	400; 332	Pfam	PF13088; PF13088	BNR repeat-like domain; BNR repeat-like domain	IPR011040; IPR011040	Sialidase; Sialidase
hsd_id_Theobroma_cacao_2785	XP_017983981.1; XP_017985393.1; XP_017985289.1	782; 695; 635	Pfam	PF13855, PF00560; PF00560, PF13855; PF13855, PF00560	Leucine rich repeat, Leucine Rich Repeat; Leucine Rich Repeat, Leucine rich repeat; Leucine rich repeat, Leucine Rich Repeat	IPR001611, IPR001611; IPR001611, IPR001611; IPR001611, IPR001611	Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat
hsd_id_Theobroma_cacao_2786	XP_017984057.1; XP_017976163.1	756; 722	Pfam	PF00069, PF00139; PF00069, PF00139	Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain	IPR000719, IPR001220; IPR000719, IPR001220	Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain
hsd_id_Theobroma_cacao_2787	XP_017984058.1; XP_017984171.1	357; 337	Pfam	PF01048; PF01048	Phosphorylase superfamily; Phosphorylase superfamily	IPR000845; IPR000845	Nucleoside phosphorylase domain; Nucleoside phosphorylase domain
hsd_id_Theobroma_cacao_2788	XP_017984061.1; XP_017984944.1; XP_017984943.1; XP_017984945.1; XP_017984875.1; XP_017984876.1; XP_017984173.1	918; 922; 927; 921; 921; 920; 922	Pfam	PF00931, PF18052; PF18052, PF00931; PF00931, PF18052; PF18052, PF00931; PF18052, PF00931; PF18052, PF00931; PF00931, PF18052	NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain; NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain; Rx N-terminal domain, NB-ARC domain; Rx N-terminal domain, NB-ARC domain; NB-ARC domain, Rx N-terminal domain	IPR002182, IPR041118; IPR041118, IPR002182; IPR002182, IPR041118; IPR041118, IPR002182; IPR041118, IPR002182; IPR041118, IPR002182; IPR002182, IPR041118	NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC; NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC; Rx, N-terminal, NB-ARC; Rx, N-terminal, NB-ARC; NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_2789	XP_017984106.1; XP_017984185.1	302; 335	Pfam	PF00191; PF00191	Annexin; Annexin	IPR018502; IPR018502	Annexin repeat; Annexin repeat
hsd_id_Theobroma_cacao_2790	XP_017984117.1; XP_017985032.1	273; 192	Pfam	PF01661; PF01661	Macro domain; Macro domain	IPR002589; IPR002589	Macro domain; Macro domain
hsd_id_Theobroma_cacao_2791	XP_017984175.1; XP_017984201.1	811; 742	Pfam	PF00931, PF18052; PF18052, PF00931	NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain	IPR002182, IPR041118; IPR041118, IPR002182	NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC
hsd_id_Theobroma_cacao_2792	XP_017984202.1; XP_017985037.1; XP_017984365.1	350; 275; 262	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2793	XP_017984222.1; XP_017984288.1	1028; 1024	Pfam	PF00931, PF18052; PF18052, PF00931	NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain	IPR002182, IPR041118; IPR041118, IPR002182	NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC
hsd_id_Theobroma_cacao_2794	XP_017984229.1; XP_017985055.1	644; 637	Pfam	PF17808, PF16656, PF14008, PF00149; PF16656, PF00149, PF14008, PF17808	Fn3-like domain from Purple Acid Phosphatase, Purple acid Phosphatase, N-terminal domain, Iron/zinc purple acid phosphatase-like protein C, Calcineurin-like phosphoesterase; Purple acid Phosphatase, N-terminal domain, Calcineurin-like phosphoesterase, Iron/zinc purple acid phosphatase-like protein C, Fn3-like domain from Purple Acid Phosphatase	IPR040974, IPR015914, IPR025733, IPR004843; IPR015914, IPR004843, IPR025733, IPR040974	Purple acid phosphatase, Fn3-like domain, Purple acid phosphatase, N-terminal, Iron/zinc purple acid phosphatase-like C-terminal domain, Calcineurin-like phosphoesterase domain, ApaH type; Purple acid phosphatase, N-terminal, Calcineurin-like phosphoesterase domain, ApaH type, Iron/zinc purple acid phosphatase-like C-terminal domain, Purple acid phosphatase, Fn3-like domain
hsd_id_Theobroma_cacao_2795	XP_017984233.1; XP_017984234.1	356; 307	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2796	XP_017984251.1; XP_017984253.1; XP_017984252.1; XP_017984502.1	463; 478; 478; 483	Pfam	PF00646; PF00646; PF00646; PF00646	F-box domain; F-box domain; F-box domain; F-box domain	IPR001810; IPR001810; IPR001810; IPR001810	F-box domain; F-box domain; F-box domain; F-box domain
hsd_id_Theobroma_cacao_2797	XP_017984257.1; XP_017984260.1; XP_017984261.1	561; 525; 495	Pfam	PF03107; PF03107; PF03107	C1 domain; C1 domain; C1 domain	IPR004146; IPR004146; IPR004146	DC1; DC1; DC1
hsd_id_Theobroma_cacao_2798	XP_017984276.1; XP_017985206.1	295; 231	Pfam	PF02431; PF02431	Chalcone-flavanone isomerase; Chalcone-flavanone isomerase	IPR016087; IPR016087	Chalcone isomerase; Chalcone isomerase
hsd_id_Theobroma_cacao_2799	XP_017984300.1; XP_017984301.1	623; 582	Pfam	PF08263, PF00560; PF00560, PF08263	Leucine rich repeat N-terminal domain, Leucine Rich Repeat; Leucine Rich Repeat, Leucine rich repeat N-terminal domain	IPR013210, IPR001611; IPR001611, IPR013210	Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type
hsd_id_Theobroma_cacao_2800	XP_017984345.1; XP_017984962.1	286; 291	Pfam	PF03754; PF03754	Domain of unknown function (DUF313); Domain of unknown function (DUF313)	IPR005508; IPR005508	B3 domain-containing protein At2g31720-like; B3 domain-containing protein At2g31720-like
hsd_id_Theobroma_cacao_2801	XP_017984349.1; XP_017984515.1; XP_017984516.1	219; 221; 221	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2802	XP_017984378.1; XP_017984595.1	1470; 1462	Pfam	PF00931, PF18052; PF18052, PF00931	NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain	IPR002182, IPR041118; IPR041118, IPR002182	NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC
hsd_id_Theobroma_cacao_2803	XP_017984408.1; XP_017984409.1	229; 198	Pfam	PF03107; PF03107	C1 domain; C1 domain	IPR004146; IPR004146	DC1; DC1
hsd_id_Theobroma_cacao_2804	XP_017984415.1; XP_017984643.1	1360; 1325	Pfam	PF18052, PF00931; PF00931, PF18052	Rx N-terminal domain, NB-ARC domain; NB-ARC domain, Rx N-terminal domain	IPR041118, IPR002182; IPR002182, IPR041118	Rx, N-terminal, NB-ARC; NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_2805	XP_017984479.1; XP_017985123.1	326; 335	Pfam	PF07859; PF07859	alpha/beta hydrolase fold; alpha/beta hydrolase fold	IPR013094; IPR013094	Alpha/beta hydrolase fold-3; Alpha/beta hydrolase fold-3
hsd_id_Theobroma_cacao_2806	XP_017984501.1; XP_017984861.1	1026; 1023	Pfam	PF00676, PF16078, PF02779, PF16870; PF00676, PF16078, PF02779, PF16870	Dehydrogenase E1 component, 2-oxoglutarate dehydrogenase N-terminus, Transketolase, pyrimidine binding domain, 2-oxoglutarate dehydrogenase C-terminal; Dehydrogenase E1 component, 2-oxoglutarate dehydrogenase N-terminus, Transketolase, pyrimidine binding domain, 2-oxoglutarate dehydrogenase C-terminal	IPR001017, IPR032106, IPR005475, IPR031717; IPR001017, IPR032106, IPR005475, IPR031717	Dehydrogenase, E1 component, 2-oxoglutarate dehydrogenase E1 component, N-terminal domain, Transketolase-like, pyrimidine-binding domain, Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal; Dehydrogenase, E1 component, 2-oxoglutarate dehydrogenase E1 component, N-terminal domain, Transketolase-like, pyrimidine-binding domain, Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal
hsd_id_Theobroma_cacao_2807	XP_017984635.1; XP_017984636.1	533; 436	Pfam	PF03107; PF03107	C1 domain; C1 domain	IPR004146; IPR004146	DC1; DC1
hsd_id_Theobroma_cacao_2808	XP_017984773.1; XP_007037855.2	1580; 1649	Pfam	PF02375, PF02373; PF02373, PF02375	jmjN domain, JmjC domain, hydroxylase; JmjC domain, hydroxylase, jmjN domain	IPR003349, IPR003347; IPR003347, IPR003349	JmjN domain, JmjC domain; JmjC domain, JmjN domain
hsd_id_Theobroma_cacao_2809	XP_017984965.1; XP_017974127.1	601; 602	Pfam	PF11961, PF05003; PF11961, PF05003	Domain of unknown function (DUF3475), Protein of unknown function (DUF668); Domain of unknown function (DUF3475), Protein of unknown function (DUF668)	IPR021864, IPR007700; IPR021864, IPR007700	Domain of unknown function DUF3475, Domain of unknown function DUF668; Domain of unknown function DUF3475, Domain of unknown function DUF668
hsd_id_Theobroma_cacao_2810	YP_004021340.1; YP_004021296.1	123; 123	Pfam	PF00164; PF00164	Ribosomal protein S12/S23; Ribosomal protein S12/S23	IPR006032; IPR006032	Ribosomal protein S12/S23; Ribosomal protein S12/S23
hsd_id_Theobroma_cacao_2811	YP_004021350.1; XP_007013462.1	37; 100	Pfam	PF00444; PF00444	Ribosomal protein L36; Ribosomal protein L36	IPR000473; IPR000473	Ribosomal protein L36; Ribosomal protein L36
hsd_id_Theobroma_cacao_2812	YP_004021376.1; YP_004021357.1	93; 93	Pfam	PF00276; PF00276	Ribosomal protein L23; Ribosomal protein L23	IPR013025; IPR013025	Ribosomal protein L25/L23; Ribosomal protein L25/L23
hsd_id_Theobroma_cacao_2813	YP_004021375.2; YP_004021358.2	2298; 2298	Pfam	PF00004, PF05695; PF00004, PF05695	ATPase family associated with various cellular activities (AAA), Plant protein of unknown function (DUF825); ATPase family associated with various cellular activities (AAA), Plant protein of unknown function (DUF825)	IPR003959, IPR008543; IPR003959, IPR008543	ATPase, AAA-type, core, Uncharacterised protein family Ycf2; ATPase, AAA-type, core, Uncharacterised protein family Ycf2
hsd_id_Theobroma_cacao_2814	YP_004021374.1; YP_004021359.1	510; 510	Pfam	PF00361; PF00361	Proton-conducting membrane transporter; Proton-conducting membrane transporter	IPR001750; IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit; NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit
hsd_id_Theobroma_cacao_2815	YP_004021373.1; YP_004021360.1	155; 155	Pfam	PF00177; PF00177	Ribosomal protein S7p/S5e; Ribosomal protein S7p/S5e	IPR023798; IPR023798	Ribosomal protein S7 domain; Ribosomal protein S7 domain
hsd_id_Theobroma_cacao_2816	XP_007008759.2; XP_007040139.2	467; 506	Pfam	PF00612, PF13178; PF13178, PF00612	IQ calmodulin-binding motif, Protein of unknown function (DUF4005); Protein of unknown function (DUF4005), IQ calmodulin-binding motif	IPR000048, IPR025064; IPR025064, IPR000048	IQ motif, EF-hand binding site, Domain of unknown function DUF4005; Domain of unknown function DUF4005, IQ motif, EF-hand binding site
hsd_id_Theobroma_cacao_2817	XP_007008903.2; XP_007045387.2; XP_007026112.2; XP_017976241.1; XP_017978413.1	382; 313; 305; 368; 406	Pfam	PF00249; PF00249; PF00249; PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930; IPR017930; IPR017930; IPR017930	Myb domain; Myb domain; Myb domain; Myb domain; Myb domain
hsd_id_Theobroma_cacao_2818	XP_007009312.1; XP_007016403.2; XP_007046179.2; XP_017977968.1; XP_007015405.2; XP_007040918.2; XP_007027015.2; XP_007032291.2; XP_007013526.2; XP_007012454.1; XP_017971826.1	410; 405; 420; 417; 410; 418; 398; 422; 427; 434; 434	Pfam	PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2819	XP_007009661.2; XP_017976941.1	383; 394	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2820	XP_007009900.2; XP_007027372.1	430; 424	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2821	XP_007010197.2; XP_007027600.2	535; 533	Pfam	PF13641; PF13641	Glycosyltransferase like family 2; Glycosyltransferase like family 2	-; -	-; -
hsd_id_Theobroma_cacao_2822	XP_007010199.2; XP_017984105.1; XP_017984153.1; XP_007039002.2	610; 612; 612; 631	Pfam	PF00069, PF13947; PF13947, PF00069; PF00069, PF13947; PF13947, PF00069	Protein kinase domain, Wall-associated receptor kinase galacturonan-binding; Wall-associated receptor kinase galacturonan-binding, Protein kinase domain; Protein kinase domain, Wall-associated receptor kinase galacturonan-binding; Wall-associated receptor kinase galacturonan-binding, Protein kinase domain	IPR000719, IPR025287; IPR025287, IPR000719; IPR000719, IPR025287; IPR025287, IPR000719	Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain; Wall-associated receptor kinase, galacturonan-binding domain, Protein kinase domain; Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain; Wall-associated receptor kinase, galacturonan-binding domain, Protein kinase domain
hsd_id_Theobroma_cacao_2823	XP_007010399.1; XP_017985178.1	419; 419	Pfam	PF00004, PF17862, PF16450; PF00004, PF16450, PF17862	ATPase family associated with various cellular activities (AAA), AAA+ lid domain, Proteasomal ATPase OB C-terminal domain; ATPase family associated with various cellular activities (AAA), Proteasomal ATPase OB C-terminal domain, AAA+ lid domain	IPR003959, IPR041569, IPR032501; IPR003959, IPR032501, IPR041569	ATPase, AAA-type, core, AAA ATPase, AAA+ lid domain, Proteasomal ATPase OB C-terminal domain; ATPase, AAA-type, core, Proteasomal ATPase OB C-terminal domain, AAA ATPase, AAA+ lid domain
hsd_id_Theobroma_cacao_2824	XP_007010484.1; XP_007015641.2; XP_007052233.1	417; 414; 421	Pfam	PF01556, PF00226, PF00684; PF00684, PF00226, PF01556; PF01556, PF00684, PF00226	DnaJ C terminal domain, DnaJ domain, DnaJ central domain; DnaJ central domain, DnaJ domain, DnaJ C terminal domain; DnaJ C terminal domain, DnaJ central domain, DnaJ domain	IPR002939, IPR001623, IPR001305; IPR001305, IPR001623, IPR002939; IPR002939, IPR001305, IPR001623	Chaperone DnaJ, C-terminal, DnaJ domain, Heat shock protein DnaJ, cysteine-rich domain; Heat shock protein DnaJ, cysteine-rich domain, DnaJ domain, Chaperone DnaJ, C-terminal; Chaperone DnaJ, C-terminal, Heat shock protein DnaJ, cysteine-rich domain, DnaJ domain
hsd_id_Theobroma_cacao_2825	XP_007010588.2; XP_017973540.1; XP_017971361.1	1142; 1193; 1232	Pfam	PF00270, PF04408, PF00271, PF07717, PF00035; PF00035, PF07717, PF00270, PF00271, PF04408; PF00270, PF00035, PF04408, PF07717, PF00271	DEAD/DEAH box helicase, Helicase associated domain (HA2), Helicase conserved C-terminal domain, Oligonucleotide/oligosaccharide-binding (OB)-fold, Double-stranded RNA binding motif; Double-stranded RNA binding motif, Oligonucleotide/oligosaccharide-binding (OB)-fold, DEAD/DEAH box helicase, Helicase conserved C-terminal domain, Helicase associated domain (HA2); DEAD/DEAH box helicase, Double-stranded RNA binding motif, Helicase associated domain (HA2), Oligonucleotide/oligosaccharide-binding (OB)-fold, Helicase conserved C-terminal domain	IPR011545, IPR007502, IPR001650, IPR011709, IPR014720; IPR014720, IPR011709, IPR011545, IPR001650, IPR007502; IPR011545, IPR014720, IPR007502, IPR011709, IPR001650	DEAD/DEAH box helicase domain, Helicase-associated domain, Helicase, C-terminal, Domain of unknown function DUF1605, Double-stranded RNA-binding domain; Double-stranded RNA-binding domain, Domain of unknown function DUF1605, DEAD/DEAH box helicase domain, Helicase, C-terminal, Helicase-associated domain; DEAD/DEAH box helicase domain, Double-stranded RNA-binding domain, Helicase-associated domain, Domain of unknown function DUF1605, Helicase, C-terminal
hsd_id_Theobroma_cacao_2826	XP_007011385.2; XP_017973736.1	486; 456	Pfam	PF00069, PF00433; PF00069, PF00433	Protein kinase domain, Protein kinase C terminal domain; Protein kinase domain, Protein kinase C terminal domain	IPR000719, IPR017892; IPR000719, IPR017892	Protein kinase domain, Protein kinase, C-terminal; Protein kinase domain, Protein kinase, C-terminal
hsd_id_Theobroma_cacao_2827	XP_007011752.2; XP_017972096.1; XP_007032204.2; XP_017982387.1; XP_017982475.1; XP_017975159.1; XP_017970790.1; XP_007047425.1	268; 251; 257; 192; 165; 150; 189; 194	Pfam	; ; ; ; ; ; ; 	; ; ; ; ; ; ; 	; ; ; ; ; ; ; 	; ; ; ; ; ; ; 
hsd_id_Theobroma_cacao_2828	XP_007011917.2; XP_007023447.2	739; 752	Pfam	PF00027, PF00520; PF00027, PF00520	Cyclic nucleotide-binding domain, Ion transport protein; Cyclic nucleotide-binding domain, Ion transport protein	IPR000595, IPR005821; IPR000595, IPR005821	Cyclic nucleotide-binding domain, Ion transport domain; Cyclic nucleotide-binding domain, Ion transport domain
hsd_id_Theobroma_cacao_2829	XP_007011965.2; XP_007023408.1; XP_007023403.2; XP_007023406.2	274; 274; 274; 273	Pfam	PF04857; PF04857; PF04857; PF04857	CAF1 family ribonuclease; CAF1 family ribonuclease; CAF1 family ribonuclease; CAF1 family ribonuclease	IPR006941; IPR006941; IPR006941; IPR006941	Ribonuclease CAF1; Ribonuclease CAF1; Ribonuclease CAF1; Ribonuclease CAF1
hsd_id_Theobroma_cacao_2830	XP_007012221.2; XP_017971813.1; XP_007018408.2; XP_017982221.1; XP_007027427.2; XP_017980191.1; XP_017974837.1; XP_007025822.2; XP_017976662.1; XP_017975709.1; XP_017972642.1; XP_007020033.2; XP_017974985.1; XP_017982183.1; XP_007050304.2; XP_017981109.1; XP_017974072.1; XP_017980529.1; XP_007012678.2; XP_007037339.1; XP_007032529.1; XP_007012950.2; XP_017972752.1; XP_007046022.2; XP_017970241.1; XP_007037409.2; XP_017980167.1; XP_017976067.1; XP_007046025.2; XP_017972560.1; XP_017970561.1; XP_007014145.2; XP_007051504.1; XP_007036334.1; XP_007022447.2; XP_007046021.2; XP_007032972.2; XP_007028406.2; XP_007022775.2; XP_017982182.1; XP_007024611.1; XP_007045022.2; XP_017982095.1; XP_007052536.2; XP_007040989.2; XP_007032600.2; XP_017978197.1; XP_007035735.2; XP_007035734.2; XP_017972302.1; XP_007038425.2; XP_007030073.2; XP_017974765.1; XP_007039451.2; XP_017976312.1; XP_017978746.1; XP_007038672.2; XP_007012408.1; XP_007041863.1; XP_007012411.1; XP_017972209.1; XP_017974784.1; XP_007032859.2; XP_007036545.1; XP_007035892.2; XP_017970607.1; XP_007022479.2; XP_007043431.2; XP_007033038.1; XP_007044287.2; XP_007046650.2; XP_007033078.2; XP_017972299.1; XP_007022480.2; XP_007030250.2; XP_007051069.1; XP_017976911.1; XP_007036734.1; XP_007045103.2; XP_007013519.2; XP_007051208.2; XP_007051325.1; XP_007036208.2; XP_007030431.2; XP_007016524.2; XP_017974629.1; XP_007044644.2; XP_007031475.2; XP_017976688.1; XP_007012415.1; XP_017979498.1; XP_007031495.1; XP_007046374.2; XP_017983216.1	316; 346; 340; 334; 341; 331; 350; 366; 358; 318; 346; 299; 290; 302; 268; 338; 341; 355; 303; 331; 321; 299; 387; 372; 350; 371; 320; 378; 368; 395; 385; 376; 287; 371; 374; 317; 307; 328; 337; 308; 298; 301; 318; 319; 350; 401; 357; 415; 406; 268; 271; 305; 271; 279; 298; 291; 295; 298; 250; 264; 267; 265; 260; 311; 319; 261; 248; 265; 274; 317; 226; 224; 243; 244; 228; 421; 441; 237; 237; 251; 297; 452; 223; 232; 276; 208; 210; 211; 247; 202; 199; 194; 486; 488	Pfam	PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930; IPR017930	Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain; Myb domain
hsd_id_Theobroma_cacao_2831	XP_007012348.1; XP_007012755.1	523; 530	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2832	XP_007012454.1; XP_007012630.1; XP_007032291.2	434; 448; 422	Pfam	PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2833	XP_007012525.2; XP_007034153.2; XP_017974176.1; XP_017971624.1; XP_007012525.2; XP_017983805.1; XP_007034153.2; XP_017974176.1; XP_017971624.1	541; 578; 579; 556; 541; 469; 578; 579; 556	Pfam	PF00010; PF00010; PF00010; PF00010; PF00010; PF00010; PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_2834	XP_007012630.1; XP_017978018.1; XP_017983393.1	448; 456; 451	Pfam	PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2835	XP_007012879.2; XP_017978855.1	678; 741	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2836	XP_007013743.2; XP_007025544.2; XP_007044393.1; XP_017977736.1; XP_007043690.2	335; 344; 312; 341; 341	Pfam	PF00226, PF01556; PF01556, PF00226; PF01556, PF00226; PF01556, PF00226; PF00226, PF01556	DnaJ domain, DnaJ C terminal domain; DnaJ C terminal domain, DnaJ domain; DnaJ C terminal domain, DnaJ domain; DnaJ C terminal domain, DnaJ domain; DnaJ domain, DnaJ C terminal domain	IPR001623, IPR002939; IPR002939, IPR001623; IPR002939, IPR001623; IPR002939, IPR001623; IPR001623, IPR002939	DnaJ domain, Chaperone DnaJ, C-terminal; Chaperone DnaJ, C-terminal, DnaJ domain; Chaperone DnaJ, C-terminal, DnaJ domain; Chaperone DnaJ, C-terminal, DnaJ domain; DnaJ domain, Chaperone DnaJ, C-terminal
hsd_id_Theobroma_cacao_2837	XP_007013842.1; XP_017977238.1; XP_017978726.1; XP_017983276.1; XP_017981277.1; XP_007018605.2; XP_017982127.1; XP_017980234.1; XP_017978934.1	1085; 1099; 1068; 1043; 1091; 1085; 1096; 1035; 980	Pfam	PF14569, PF03552; PF03552, PF14569; PF03552, PF14569; PF14569, PF03552; PF03552, PF14569; PF03552, PF14569; PF03552, PF14569; PF03552, PF14569; PF14569, PF03552	Zinc-binding RING-finger, Cellulose synthase; Cellulose synthase, Zinc-binding RING-finger; Cellulose synthase, Zinc-binding RING-finger; Zinc-binding RING-finger, Cellulose synthase; Cellulose synthase, Zinc-binding RING-finger; Cellulose synthase, Zinc-binding RING-finger; Cellulose synthase, Zinc-binding RING-finger; Cellulose synthase, Zinc-binding RING-finger; Zinc-binding RING-finger, Cellulose synthase	IPR027934, IPR005150; IPR005150, IPR027934; IPR005150, IPR027934; IPR027934, IPR005150; IPR005150, IPR027934; IPR005150, IPR027934; IPR005150, IPR027934; IPR005150, IPR027934; IPR027934, IPR005150	Cellulose synthase, RING-type zinc finger, Cellulose synthase; Cellulose synthase, Cellulose synthase, RING-type zinc finger; Cellulose synthase, Cellulose synthase, RING-type zinc finger; Cellulose synthase, RING-type zinc finger, Cellulose synthase; Cellulose synthase, Cellulose synthase, RING-type zinc finger; Cellulose synthase, Cellulose synthase, RING-type zinc finger; Cellulose synthase, Cellulose synthase, RING-type zinc finger; Cellulose synthase, Cellulose synthase, RING-type zinc finger; Cellulose synthase, RING-type zinc finger, Cellulose synthase
hsd_id_Theobroma_cacao_2838	XP_007014165.2; XP_017983916.1; XP_007035759.2; XP_007014171.2; XP_007014173.1; XP_007014183.2; XP_007014179.2; XP_007014176.2; XP_017982142.1; XP_007015526.1; XP_007034180.2; XP_007025220.2; XP_017970836.1; XP_017970584.1; XP_017978189.1	290; 290; 290; 348; 294; 296; 282; 293; 319; 285; 291; 291; 294; 293; 277	Pfam	PF00722, PF06955; PF06955, PF00722; PF00722, PF06955; PF06955, PF00722; PF06955, PF00722; PF06955, PF00722; PF00722, PF06955; PF06955, PF00722; PF00722, PF06955; PF00722, PF06955; PF00722, PF06955; PF06955, PF00722; PF00722, PF06955; PF00722, PF06955; PF00722, PF06955	Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Xyloglucan endo-transglycosylase (XET) C-terminus, Glycosyl hydrolases family 16; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus; Glycosyl hydrolases family 16, Xyloglucan endo-transglycosylase (XET) C-terminus	IPR000757, IPR010713; IPR010713, IPR000757; IPR000757, IPR010713; IPR010713, IPR000757; IPR010713, IPR000757; IPR010713, IPR000757; IPR000757, IPR010713; IPR010713, IPR000757; IPR000757, IPR010713; IPR000757, IPR010713; IPR000757, IPR010713; IPR010713, IPR000757; IPR000757, IPR010713; IPR000757, IPR010713; IPR000757, IPR010713	Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Xyloglucan endo-transglycosylase, C-terminal, Glycoside hydrolase family 16; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal; Glycoside hydrolase family 16, Xyloglucan endo-transglycosylase, C-terminal
hsd_id_Theobroma_cacao_2839	XP_007014892.2; XP_017983124.1; XP_017983404.1	898; 907; 898	Pfam	PF01477, PF00305; PF00305, PF01477; PF01477, PF00305	PLAT/LH2 domain, Lipoxygenase; Lipoxygenase, PLAT/LH2 domain; PLAT/LH2 domain, Lipoxygenase	IPR001024, IPR013819; IPR013819, IPR001024; IPR001024, IPR013819	PLAT/LH2 domain, Lipoxygenase, C-terminal; Lipoxygenase, C-terminal, PLAT/LH2 domain; PLAT/LH2 domain, Lipoxygenase, C-terminal
hsd_id_Theobroma_cacao_2840	XP_007015111.2; XP_017983584.1	685; 697	Pfam	PF19055, PF01061, PF00005; PF01061, PF00005, PF19055	ABC-2 type transporter, ABC-2 type transporter, ABC transporter; ABC-2 type transporter, ABC transporter, ABC-2 type transporter	IPR043926, IPR013525, IPR003439; IPR013525, IPR003439, IPR043926	ABC transporter family G domain, ABC-2 type transporter, ABC transporter-like, ATP-binding domain; ABC-2 type transporter, ABC transporter-like, ATP-binding domain, ABC transporter family G domain
hsd_id_Theobroma_cacao_2841	XP_007015253.1; XP_007040387.2; XP_007026066.2; XP_007020820.2; XP_017984839.1; XP_017980942.1; XP_017981135.1; XP_007048647.2; XP_007019990.2; XP_007028039.1; XP_017971094.1; XP_007037189.1; XP_017977403.1; XP_017982809.1; XP_007028795.1; XP_007034055.2	535; 531; 548; 536; 583; 500; 516; 494; 503; 607; 562; 550; 527; 532; 533; 537	Pfam	PF13499, PF00069; PF13499, PF00069; PF00069, PF13499; PF13499, PF00069; PF13499, PF00069; PF13499, PF00069; PF00069, PF13499; PF00069, PF13499; PF00069, PF13499; PF13499, PF00069; PF00069, PF13499; PF13499, PF00069; PF00069, PF13499; PF13499, PF00069; PF00069, PF13499; PF00069, PF13499	EF-hand domain pair, Protein kinase domain; EF-hand domain pair, Protein kinase domain; Protein kinase domain, EF-hand domain pair; EF-hand domain pair, Protein kinase domain; EF-hand domain pair, Protein kinase domain; EF-hand domain pair, Protein kinase domain; Protein kinase domain, EF-hand domain pair; Protein kinase domain, EF-hand domain pair; Protein kinase domain, EF-hand domain pair; EF-hand domain pair, Protein kinase domain; Protein kinase domain, EF-hand domain pair; EF-hand domain pair, Protein kinase domain; Protein kinase domain, EF-hand domain pair; EF-hand domain pair, Protein kinase domain; Protein kinase domain, EF-hand domain pair; Protein kinase domain, EF-hand domain pair	IPR002048, IPR000719; IPR002048, IPR000719; IPR000719, IPR002048; IPR002048, IPR000719; IPR002048, IPR000719; IPR002048, IPR000719; IPR000719, IPR002048; IPR000719, IPR002048; IPR000719, IPR002048; IPR002048, IPR000719; IPR000719, IPR002048; IPR002048, IPR000719; IPR000719, IPR002048; IPR002048, IPR000719; IPR000719, IPR002048; IPR000719, IPR002048	EF-hand domain, Protein kinase domain; EF-hand domain, Protein kinase domain; Protein kinase domain, EF-hand domain; EF-hand domain, Protein kinase domain; EF-hand domain, Protein kinase domain; EF-hand domain, Protein kinase domain; Protein kinase domain, EF-hand domain; Protein kinase domain, EF-hand domain; Protein kinase domain, EF-hand domain; EF-hand domain, Protein kinase domain; Protein kinase domain, EF-hand domain; EF-hand domain, Protein kinase domain; Protein kinase domain, EF-hand domain; EF-hand domain, Protein kinase domain; Protein kinase domain, EF-hand domain; Protein kinase domain, EF-hand domain
hsd_id_Theobroma_cacao_2842	XP_007015610.2; XP_017982527.1; XP_017982308.1; XP_007015610.2; XP_017982527.1; XP_017982308.1; XP_007015610.2; XP_017982527.1; XP_017970608.1; XP_017982308.1; XP_017981031.1; XP_017982401.1; XP_007036788.2	310; 310; 310; 310; 310; 310; 310; 310; 354; 310; 262; 254; 246	Pfam	PF12776; PF12776; PF12776; PF12776; PF12776; PF12776; PF12776; PF12776; PF12776; PF12776; PF12776; PF12776; PF12776	Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain; Myb/SANT-like DNA-binding domain	IPR024752; IPR024752; IPR024752; IPR024752; IPR024752; IPR024752; IPR024752; IPR024752; IPR024752; IPR024752; IPR024752; IPR024752; IPR024752	Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain; Myb/SANT-like domain
hsd_id_Theobroma_cacao_2843	XP_007016094.2; XP_007016097.2	596; 591	Pfam	PF00168, PF00387, PF09279, PF00388; PF00388, PF00168, PF09279, PF00387	C2 domain, Phosphatidylinositol-specific phospholipase C, Y domain, Phosphoinositide-specific phospholipase C, efhand-like, Phosphatidylinositol-specific phospholipase C, X domain; Phosphatidylinositol-specific phospholipase C, X domain, C2 domain, Phosphoinositide-specific phospholipase C, efhand-like, Phosphatidylinositol-specific phospholipase C, Y domain	IPR000008, IPR001711, IPR015359, IPR000909; IPR000909, IPR000008, IPR015359, IPR001711	C2 domain, Phospholipase C, phosphatidylinositol-specific, Y domain, Phosphoinositide-specific phospholipase C, EF-hand-like domain, Phosphatidylinositol-specific phospholipase C, X domain; Phosphatidylinositol-specific phospholipase C, X domain, C2 domain, Phosphoinositide-specific phospholipase C, EF-hand-like domain, Phospholipase C, phosphatidylinositol-specific, Y domain
hsd_id_Theobroma_cacao_2844	XP_007016280.2; XP_007016281.2	221; 261	Pfam	PF00043, PF02798; PF02798, PF00043	Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain	IPR004046, IPR004045; IPR004045, IPR004046	Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal, Glutathione S-transferase, C-terminal
hsd_id_Theobroma_cacao_2845	XP_007016342.2; XP_017982159.1; XP_017982599.1; XP_007026953.2; XP_007026951.2	637; 675; 688; 669; 669	Pfam	PF00139, PF00069; PF00139, PF00069; PF00139, PF00069; PF00069, PF00139; PF00069, PF00139	Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain; Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain	IPR001220, IPR000719; IPR001220, IPR000719; IPR001220, IPR000719; IPR000719, IPR001220; IPR000719, IPR001220	Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain; Legume lectin domain, Protein kinase domain; Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain
hsd_id_Theobroma_cacao_2846	XP_007016354.2; XP_017984739.1	1067; 1016	Pfam	PF00806, PF07990; PF00806, PF07990	Pumilio-family RNA binding repeat, Nucleic acid binding protein NABP; Pumilio-family RNA binding repeat, Nucleic acid binding protein NABP	IPR001313, IPR012940; IPR001313, IPR012940	Pumilio RNA-binding repeat, Nucleic acid binding NABP; Pumilio RNA-binding repeat, Nucleic acid binding NABP
hsd_id_Theobroma_cacao_2847	XP_007016534.2; XP_017982060.1; XP_017985061.1; XP_007033541.2; XP_017984480.1; XP_007025463.2	210; 197; 195; 198; 171; 237	Pfam	PF13639; PF13639; PF13639; PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841; IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2848	XP_007016574.2; XP_007027146.2	1061; 1062	Pfam	PF00690, PF00702, PF00122, PF00689; PF00690, PF00122, PF00702, PF00689	Cation transporter/ATPase, N-terminus, haloacid dehalogenase-like hydrolase, E1-E2 ATPase, Cation transporting ATPase, C-terminus; Cation transporter/ATPase, N-terminus, E1-E2 ATPase, haloacid dehalogenase-like hydrolase, Cation transporting ATPase, C-terminus	IPR004014, -, -, IPR006068; IPR004014, -, -, IPR006068	Cation-transporting P-type ATPase, N-terminal, -, -, Cation-transporting P-type ATPase, C-terminal; Cation-transporting P-type ATPase, N-terminal, -, -, Cation-transporting P-type ATPase, C-terminal
hsd_id_Theobroma_cacao_2849	XP_007016891.2; XP_007027465.2	296; 284	Pfam	PF14599, PF13445, PF05495; PF13445, PF14599, PF05495	Zinc-ribbon, RING-type zinc-finger, CHY zinc finger; RING-type zinc-finger, Zinc-ribbon, CHY zinc finger	IPR039512, IPR027370, IPR008913; IPR027370, IPR039512, IPR008913	RCHY1, zinc-ribbon, RING-type zinc-finger, LisH dimerisation motif, Zinc finger, CHY-type; RING-type zinc-finger, LisH dimerisation motif, RCHY1, zinc-ribbon, Zinc finger, CHY-type
hsd_id_Theobroma_cacao_2850	XP_007016921.1; XP_017983677.1	265; 174	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2851	XP_007017204.1; XP_007048332.2; XP_007033052.2; XP_007042632.2; XP_007026627.2; XP_007018521.1; XP_007047278.2	263; 223; 324; 358; 170; 380; 261	Pfam	PF00010; PF00010; PF00010; PF00010; PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_2852	XP_007017577.2; XP_007046882.1	273; 271	Pfam	PF14602, PF00132; PF00132	Hexapeptide repeat of succinyl-transferase, Bacterial transferase hexapeptide (six repeats); Bacterial transferase hexapeptide (six repeats)	IPR001451, IPR001451; IPR001451	Hexapeptide repeat, Hexapeptide repeat; Hexapeptide repeat
hsd_id_Theobroma_cacao_2853	XP_007017889.1; XP_007022249.2	164; 132	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2854	XP_007018426.2; XP_007046905.2	435; 385	Pfam	PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_2855	XP_007019337.1; XP_017976032.1; XP_007019337.1; XP_017976032.1; XP_007019337.1; XP_007037053.1	333; 384; 333; 384; 333; 248	Pfam	PF13921; PF13921; PF13921; PF13921; PF13921; PF13921	Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain	-; -; -; -; -; -	-; -; -; -; -; -
hsd_id_Theobroma_cacao_2856	XP_007019702.2; XP_017980817.1; XP_017981324.1; XP_007009715.1; XP_017972149.1; XP_007051437.2	268; 265; 331; 256; 254; 313	Pfam	PF00076; PF00076; PF00076; PF00076; PF00076; PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	IPR000504; IPR000504; IPR000504; IPR000504; IPR000504; IPR000504	RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain; RNA recognition motif domain
hsd_id_Theobroma_cacao_2857	XP_007020020.1; XP_017969954.1; XP_007037311.2; XP_007051964.2; XP_017973008.1; XP_007031923.2; XP_007040099.2; XP_007043907.1; XP_007043253.2; XP_007027375.2; XP_017982439.1	409; 371; 399; 354; 349; 314; 390; 294; 261; 214; 194	Pfam	PF03634; PF03634; PF03634; PF03634; PF03634; PF03634; PF03634; PF03634; PF03634; PF03634; PF03634	TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor; TCP family transcription factor	IPR017887; IPR017887; IPR017887; IPR017887; IPR017887; IPR017887; IPR017887; IPR017887; IPR017887; IPR017887; IPR017887	Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup; Transcription factor TCP subgroup
hsd_id_Theobroma_cacao_2858	XP_007020096.2; XP_017983588.1; XP_007020096.2; XP_017976614.1	302; 303; 302; 382	Pfam	PF00010; PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_2859	XP_007020398.2; XP_017973685.1; XP_017977897.1; XP_007051021.2; XP_017975990.1; XP_017972201.1	1135; 1044; 1046; 1016; 1038; 971	Pfam	PF00307, PF00225; PF00307, PF00225; PF00225, PF00307; PF00225, PF00307; PF00307, PF00225; PF00307, PF00225	Calponin homology (CH) domain, Kinesin motor domain; Calponin homology (CH) domain, Kinesin motor domain; Kinesin motor domain, Calponin homology (CH) domain; Kinesin motor domain, Calponin homology (CH) domain; Calponin homology (CH) domain, Kinesin motor domain; Calponin homology (CH) domain, Kinesin motor domain	IPR001715, IPR001752; IPR001715, IPR001752; IPR001752, IPR001715; IPR001752, IPR001715; IPR001715, IPR001752; IPR001715, IPR001752	Calponin homology domain, Kinesin motor domain; Calponin homology domain, Kinesin motor domain; Kinesin motor domain, Calponin homology domain; Kinesin motor domain, Calponin homology domain; Calponin homology domain, Kinesin motor domain; Calponin homology domain, Kinesin motor domain
hsd_id_Theobroma_cacao_2860	XP_007020595.2; XP_017979647.1; XP_017979644.1; XP_017979643.1; XP_017979649.1; XP_017979645.1	734; 735; 792; 738; 734; 780	Pfam	PF00560, PF13855, PF08263; PF08263, PF13855, PF00560; PF00560, PF13855, PF08263; PF13855, PF08263, PF00560; PF13855, PF00560, PF08263; PF08263, PF13855, PF00560	Leucine Rich Repeat, Leucine rich repeat, Leucine rich repeat N-terminal domain; Leucine rich repeat N-terminal domain, Leucine rich repeat, Leucine Rich Repeat; Leucine Rich Repeat, Leucine rich repeat, Leucine rich repeat N-terminal domain; Leucine rich repeat, Leucine rich repeat N-terminal domain, Leucine Rich Repeat; Leucine rich repeat, Leucine Rich Repeat, Leucine rich repeat N-terminal domain; Leucine rich repeat N-terminal domain, Leucine rich repeat, Leucine Rich Repeat	IPR001611, IPR001611, IPR013210; IPR013210, IPR001611, IPR001611; IPR001611, IPR001611, IPR013210; IPR001611, IPR013210, IPR001611; IPR001611, IPR001611, IPR013210; IPR013210, IPR001611, IPR001611	Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat
hsd_id_Theobroma_cacao_2861	XP_007021028.1; XP_007025988.2; XP_007026077.1	75; 74; 81	Pfam	PF00249; PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930; IPR017930	Myb domain; Myb domain; Myb domain
hsd_id_Theobroma_cacao_2862	XP_007021956.2; XP_017980344.1; XP_017980345.1; XP_017980346.1; XP_017980342.1; XP_007021956.2; XP_007021970.2	641; 651; 650; 650; 653; 641; 622	Pfam	PF00069, PF13947; PF00069, PF13947; PF00069, PF13947; PF00069, PF13947; PF00069, PF13947; PF00069, PF13947; PF13947, PF00069	Protein kinase domain, Wall-associated receptor kinase galacturonan-binding; Protein kinase domain, Wall-associated receptor kinase galacturonan-binding; Protein kinase domain, Wall-associated receptor kinase galacturonan-binding; Protein kinase domain, Wall-associated receptor kinase galacturonan-binding; Protein kinase domain, Wall-associated receptor kinase galacturonan-binding; Protein kinase domain, Wall-associated receptor kinase galacturonan-binding; Wall-associated receptor kinase galacturonan-binding, Protein kinase domain	IPR000719, IPR025287; IPR000719, IPR025287; IPR000719, IPR025287; IPR000719, IPR025287; IPR000719, IPR025287; IPR000719, IPR025287; IPR025287, IPR000719	Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain; Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain; Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain; Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain; Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain; Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain; Wall-associated receptor kinase, galacturonan-binding domain, Protein kinase domain
hsd_id_Theobroma_cacao_2863	XP_007021975.1; XP_017970511.1; XP_007045698.2; XP_017970510.1; XP_007046174.2; XP_007046188.2; XP_017970509.1	252; 257; 257; 257; 254; 240; 222	Pfam	PF13639; PF13639; PF13639; PF13639; PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841; IPR001841; IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2864	XP_007022008.1; XP_017969597.1	667; 681	Pfam	PF04321, PF16363; PF04321, PF16363	RmlD substrate binding domain, GDP-mannose 4,6 dehydratase; RmlD substrate binding domain, GDP-mannose 4,6 dehydratase	IPR029903, IPR016040; IPR029903, IPR016040	RmlD-like substrate binding domain, NAD(P)-binding domain; RmlD-like substrate binding domain, NAD(P)-binding domain
hsd_id_Theobroma_cacao_2865	XP_007022193.2; XP_007022199.2	203; 219	Pfam	PF13410, PF02798; PF13410, PF02798	Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain	-, IPR004045; -, IPR004045	-, Glutathione S-transferase, N-terminal; -, Glutathione S-transferase, N-terminal
hsd_id_Theobroma_cacao_2866	XP_007022452.1; XP_007022456.2; XP_007048608.1; XP_017976796.1; XP_017969957.1	154; 154; 154; 156; 156	Pfam	PF00240; PF00240; PF00240; PF00240, PF01599; PF00240, PF01599	Ubiquitin family; Ubiquitin family; Ubiquitin family; Ubiquitin family, Ribosomal protein S27a; Ubiquitin family, Ribosomal protein S27a	IPR000626; IPR000626; IPR000626; IPR000626, IPR002906; IPR000626, IPR002906	Ubiquitin-like domain; Ubiquitin-like domain; Ubiquitin-like domain; Ubiquitin-like domain, Ribosomal protein S27a; Ubiquitin-like domain, Ribosomal protein S27a
hsd_id_Theobroma_cacao_2867	XP_007022785.2; XP_017975883.1	360; 288	Pfam	PF14379, PF00249; PF14379, PF00249	MYB-CC type transfactor, LHEQLE motif, Myb-like DNA-binding domain; MYB-CC type transfactor, LHEQLE motif, Myb-like DNA-binding domain	IPR025756, IPR017930; IPR025756, IPR017930	MYB-CC type transcription factor, LHEQLE-containing domain, Myb domain; MYB-CC type transcription factor, LHEQLE-containing domain, Myb domain
hsd_id_Theobroma_cacao_2868	XP_007023458.2; XP_017978913.1	424; 442	Pfam	PF01544; PF01544	CorA-like Mg2+ transporter protein; CorA-like Mg2+ transporter protein	IPR002523; IPR002523	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB; Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB
hsd_id_Theobroma_cacao_2869	XP_007024170.2; XP_017983646.1; XP_007042215.2	566; 587; 632	Pfam	PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2870	XP_007024784.1; XP_017973357.1	294; 211	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2871	XP_007024793.1; XP_007024794.1	426; 426	Pfam	PF00004, PF17862; PF00004, PF17862	ATPase family associated with various cellular activities (AAA), AAA+ lid domain; ATPase family associated with various cellular activities (AAA), AAA+ lid domain	IPR003959, IPR041569; IPR003959, IPR041569	ATPase, AAA-type, core, AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core, AAA ATPase, AAA+ lid domain
hsd_id_Theobroma_cacao_2872	XP_007025665.1; XP_007026720.1; XP_017982663.1	247; 242; 257	Pfam	PF13920; PF13920; PF13920	Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger)	-; -; -	-; -; -
hsd_id_Theobroma_cacao_2873	XP_007025805.2; XP_017978719.1	586; 586	Pfam	PF18791, PF13516, PF18511; PF13516, PF18511, PF18791	Transport inhibitor response 1 protein domain, Leucine Rich repeat, F-box; Leucine Rich repeat, F-box, Transport inhibitor response 1 protein domain	IPR041101, IPR001611, IPR041567; IPR001611, IPR041567, IPR041101	Transport inhibitor response 1 domain, Leucine-rich repeat, COI1, F-box; Leucine-rich repeat, COI1, F-box, Transport inhibitor response 1 domain
hsd_id_Theobroma_cacao_2874	XP_007025935.2; XP_017978383.1	666; 664	Pfam	PF01657, PF07714; PF07714, PF01657	Salt stress response/antifungal, Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, Salt stress response/antifungal	IPR002902, IPR001245; IPR001245, IPR002902	Gnk2-homologous domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Gnk2-homologous domain
hsd_id_Theobroma_cacao_2875	XP_007026411.1; XP_017980183.1	226; 226	Pfam	PF13499, PF13833; PF13833, PF13499	EF-hand domain pair, EF-hand domain pair; EF-hand domain pair, EF-hand domain pair	IPR002048, IPR002048; IPR002048, IPR002048	EF-hand domain, EF-hand domain; EF-hand domain, EF-hand domain
hsd_id_Theobroma_cacao_2876	XP_007026863.2; XP_007026865.2; XP_007026866.1	228; 220; 224	Pfam	PF02798, PF00043; PF00043, PF02798; PF00043, PF02798	Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain; Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain	IPR004045, IPR004046; IPR004046, IPR004045; IPR004046, IPR004045	Glutathione S-transferase, N-terminal, Glutathione S-transferase, C-terminal; Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal
hsd_id_Theobroma_cacao_2877	XP_007026949.2; XP_017984057.1	683; 756	Pfam	PF00069, PF00139; PF00069, PF00139	Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain	IPR000719, IPR001220; IPR000719, IPR001220	Protein kinase domain, Legume lectin domain; Protein kinase domain, Legume lectin domain
hsd_id_Theobroma_cacao_2878	XP_007026954.2; XP_017976163.1; XP_007026957.2	668; 722; 655	Pfam	PF00139, PF00069; PF00069, PF00139; PF00139, PF00069	Legume lectin domain, Protein kinase domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain	IPR001220, IPR000719; IPR000719, IPR001220; IPR001220, IPR000719	Legume lectin domain, Protein kinase domain; Protein kinase domain, Legume lectin domain; Legume lectin domain, Protein kinase domain
hsd_id_Theobroma_cacao_2879	XP_007027024.2; XP_017972418.1	559; 497	Pfam	PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930	Myb domain; Myb domain
hsd_id_Theobroma_cacao_2880	XP_007027150.1; XP_007027151.2; XP_017976290.1	686; 709; 696	Pfam	PF01061, PF00005; PF01061, PF00005; PF00005, PF01061	ABC-2 type transporter, ABC transporter; ABC-2 type transporter, ABC transporter; ABC transporter, ABC-2 type transporter	IPR013525, IPR003439; IPR013525, IPR003439; IPR003439, IPR013525	ABC-2 type transporter, ABC transporter-like, ATP-binding domain; ABC-2 type transporter, ABC transporter-like, ATP-binding domain; ABC transporter-like, ATP-binding domain, ABC-2 type transporter
hsd_id_Theobroma_cacao_2881	XP_007028590.2; XP_017982606.1	408; 311	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2882	XP_007028653.1; XP_007010656.2; XP_017969779.1; XP_017970512.1; XP_017978037.1; XP_017983324.1; XP_007032458.1; XP_007014251.2; XP_017982598.1; XP_007024618.2	421; 412; 520; 392; 370; 354; 387; 547; 544; 579	Pfam	PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847	AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain	IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471	AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain
hsd_id_Theobroma_cacao_2883	XP_007028826.2; XP_017972043.1	654; 655	Pfam	PF01535, PF13041, PF12854; PF01535, PF13041, PF13812	PPR repeat, PPR repeat family, PPR repeat; PPR repeat, PPR repeat family, Pentatricopeptide repeat domain	IPR002885, IPR002885, IPR002885; IPR002885, IPR002885, IPR002885	Pentatricopeptide repeat, Pentatricopeptide repeat, Pentatricopeptide repeat; Pentatricopeptide repeat, Pentatricopeptide repeat, Pentatricopeptide repeat
hsd_id_Theobroma_cacao_2884	XP_007028901.2; XP_007038102.2; XP_007030571.1; XP_007028901.2; XP_007099736.2; XP_007099748.1; XP_007038102.2; XP_007042169.2	359; 348; 345; 359; 264; 283; 348; 440	Pfam	PF00010; PF00010; PF00010; PF00010; PF00010; PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_2885	XP_007029180.2; XP_017975206.1	596; 573	Pfam	PF01485; PF01485	IBR domain, a half RING-finger domain; IBR domain, a half RING-finger domain	IPR002867; IPR002867	IBR domain; IBR domain
hsd_id_Theobroma_cacao_2886	XP_007029648.2; XP_017976521.1	870; 787	Pfam	PF18052, PF13855, PF00931; PF00931, PF18052, PF13855	Rx N-terminal domain, Leucine rich repeat, NB-ARC domain; NB-ARC domain, Rx N-terminal domain, Leucine rich repeat	IPR041118, IPR001611, IPR002182; IPR002182, IPR041118, IPR001611	Rx, N-terminal, Leucine-rich repeat, NB-ARC; NB-ARC, Rx, N-terminal, Leucine-rich repeat
hsd_id_Theobroma_cacao_2887	XP_007029718.2; XP_017976527.1	233; 257	Pfam	PF02798, PF00043; PF02798, PF00043	Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain; Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain	IPR004045, IPR004046; IPR004045, IPR004046	Glutathione S-transferase, N-terminal, Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal, Glutathione S-transferase, C-terminal
hsd_id_Theobroma_cacao_2888	XP_007030538.1; XP_017974063.1; XP_007047365.2	352; 308; 348	Pfam	PF03106, PF10533; PF03106, PF10533; PF03106, PF10533	WRKY DNA -binding domain, Plant zinc cluster domain; WRKY DNA -binding domain, Plant zinc cluster domain; WRKY DNA -binding domain, Plant zinc cluster domain	IPR003657, IPR018872; IPR003657, IPR018872; IPR003657, IPR018872	WRKY domain, Zn-cluster domain; WRKY domain, Zn-cluster domain; WRKY domain, Zn-cluster domain
hsd_id_Theobroma_cacao_2889	XP_007030585.1; XP_007034907.1; XP_017982974.1; XP_017970717.1	149; 152; 149; 148	Pfam	PF13499; PF13499; PF13499; PF13499	EF-hand domain pair; EF-hand domain pair; EF-hand domain pair; EF-hand domain pair	IPR002048; IPR002048; IPR002048; IPR002048	EF-hand domain; EF-hand domain; EF-hand domain; EF-hand domain
hsd_id_Theobroma_cacao_2890	XP_007030588.2; XP_017977787.1; XP_017976106.1; XP_017974148.1; XP_017975264.1; XP_007050467.2	1001; 1001; 1019; 1018; 1018; 1064	Pfam	PF00702, PF00689, PF00122, PF00690; PF00690, PF00689, PF00702, PF00122; PF00689, PF00702, PF00122, PF00690; PF00689, PF00122, PF00690, PF00702; PF00122, PF00702, PF00689, PF00690; PF00690, PF00702, PF00689, PF00122	haloacid dehalogenase-like hydrolase, Cation transporting ATPase, C-terminus, E1-E2 ATPase, Cation transporter/ATPase, N-terminus; Cation transporter/ATPase, N-terminus, Cation transporting ATPase, C-terminus, haloacid dehalogenase-like hydrolase, E1-E2 ATPase; Cation transporting ATPase, C-terminus, haloacid dehalogenase-like hydrolase, E1-E2 ATPase, Cation transporter/ATPase, N-terminus; Cation transporting ATPase, C-terminus, E1-E2 ATPase, Cation transporter/ATPase, N-terminus, haloacid dehalogenase-like hydrolase; E1-E2 ATPase, haloacid dehalogenase-like hydrolase, Cation transporting ATPase, C-terminus, Cation transporter/ATPase, N-terminus; Cation transporter/ATPase, N-terminus, haloacid dehalogenase-like hydrolase, Cation transporting ATPase, C-terminus, E1-E2 ATPase	-, IPR006068, -, IPR004014; IPR004014, IPR006068, -, -; IPR006068, -, -, IPR004014; IPR006068, -, IPR004014, -; -, -, IPR006068, IPR004014; IPR004014, -, IPR006068, -	-, Cation-transporting P-type ATPase, C-terminal, -, Cation-transporting P-type ATPase, N-terminal; Cation-transporting P-type ATPase, N-terminal, Cation-transporting P-type ATPase, C-terminal, -, -; Cation-transporting P-type ATPase, C-terminal, -, -, Cation-transporting P-type ATPase, N-terminal; Cation-transporting P-type ATPase, C-terminal, -, Cation-transporting P-type ATPase, N-terminal, -; -, -, Cation-transporting P-type ATPase, C-terminal, Cation-transporting P-type ATPase, N-terminal; Cation-transporting P-type ATPase, N-terminal, -, Cation-transporting P-type ATPase, C-terminal, -
hsd_id_Theobroma_cacao_2891	XP_007030761.1; XP_007050720.1; XP_007035416.1	149; 150; 154	Pfam	PF01627; PF01627; PF01627	Hpt domain; Hpt domain; Hpt domain	IPR008207; IPR008207; IPR008207	Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain
hsd_id_Theobroma_cacao_2892	XP_007031103.2; XP_017976641.1	626; 629	Pfam	PF12854, PF01535, PF13041; PF13041, PF12854, PF01535	PPR repeat, PPR repeat, PPR repeat family; PPR repeat family, PPR repeat, PPR repeat	IPR002885, IPR002885, IPR002885; IPR002885, IPR002885, IPR002885	Pentatricopeptide repeat, Pentatricopeptide repeat, Pentatricopeptide repeat; Pentatricopeptide repeat, Pentatricopeptide repeat, Pentatricopeptide repeat
hsd_id_Theobroma_cacao_2893	XP_007031244.2; XP_017975209.1; XP_007048877.2; XP_017970685.1; XP_017983967.1; XP_007047291.2; XP_017981779.1	509; 497; 508; 463; 489; 494; 518	Pfam	PF00069; PF00069; PF00069; PF00069; PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2894	XP_007031413.2; XP_007044580.2; XP_017973140.1	400; 387; 366	Pfam	PF13639; PF13639; PF13639	Ring finger domain; Ring finger domain; Ring finger domain	IPR001841; IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2895	XP_007031422.2; XP_017972341.1	701; 694	Pfam	PF00027, PF00520; PF00520, PF00027	Cyclic nucleotide-binding domain, Ion transport protein; Ion transport protein, Cyclic nucleotide-binding domain	IPR000595, IPR005821; IPR005821, IPR000595	Cyclic nucleotide-binding domain, Ion transport domain; Ion transport domain, Cyclic nucleotide-binding domain
hsd_id_Theobroma_cacao_2896	XP_007031685.1; XP_007037815.1; XP_007044917.1; XP_007034463.2; XP_007049844.2	405; 404; 406; 447; 444	Pfam	PF00544; PF00544; PF00544; PF00544; PF00544	Pectate lyase; Pectate lyase; Pectate lyase; Pectate lyase; Pectate lyase	IPR002022; IPR002022; IPR002022; IPR002022; IPR002022	Pectate lyase; Pectate lyase; Pectate lyase; Pectate lyase; Pectate lyase
hsd_id_Theobroma_cacao_2897	XP_007031984.1; XP_007050791.2	572; 587	Pfam	PF18791, PF18511; PF18791, PF18511	Transport inhibitor response 1 protein domain, F-box; Transport inhibitor response 1 protein domain, F-box	IPR041101, IPR041567; IPR041101, IPR041567	Transport inhibitor response 1 domain, COI1, F-box; Transport inhibitor response 1 domain, COI1, F-box
hsd_id_Theobroma_cacao_2898	XP_007032484.1; XP_007046228.2	489; 517	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2899	XP_007032495.1; XP_007037282.1; XP_017970155.1	91; 91; 111	Pfam	PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_2900	XP_007032865.1; XP_017970028.1; XP_007032865.1; XP_017972163.1; XP_017970028.1	243; 241; 243; 221; 241	Pfam	PF00319, PF01486; PF01486, PF00319; PF00319, PF01486; PF00319, PF01486; PF01486, PF00319	SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region; K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region; SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region; K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain)	IPR002100, IPR002487; IPR002487, IPR002100; IPR002100, IPR002487; IPR002100, IPR002487; IPR002487, IPR002100	Transcription factor, MADS-box, Transcription factor, K-box; Transcription factor, K-box, Transcription factor, MADS-box; Transcription factor, MADS-box, Transcription factor, K-box; Transcription factor, MADS-box, Transcription factor, K-box; Transcription factor, K-box, Transcription factor, MADS-box
hsd_id_Theobroma_cacao_2901	XP_007033118.1; XP_017978369.1; XP_007026221.2	122; 113; 119	Pfam	PF14368; PF14368; PF14368	Probable lipid transfer; Probable lipid transfer; Probable lipid transfer	IPR016140; IPR016140; IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain; Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
hsd_id_Theobroma_cacao_2902	XP_007033559.2; XP_017982763.1	617; 605	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2903	XP_007034003.2; XP_017980220.1	839; 841	Pfam	PF17862, PF00004; PF17862, PF00004, PF16725	AAA+ lid domain, ATPase family associated with various cellular activities (AAA); AAA+ lid domain, ATPase family associated with various cellular activities (AAA), Nucleolin binding domain	IPR041569, IPR003959; IPR041569, IPR003959, IPR031996	AAA ATPase, AAA+ lid domain, ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain, ATPase, AAA-type, core, NVL2, nucleolin binding domain
hsd_id_Theobroma_cacao_2904	XP_007034129.2; XP_017974497.1	157; 135	Pfam	PF03819; PF03819	MazG nucleotide pyrophosphohydrolase domain; MazG nucleotide pyrophosphohydrolase domain	IPR004518; IPR004518	NTP pyrophosphohydrolase MazG, putative catalytic core; NTP pyrophosphohydrolase MazG, putative catalytic core
hsd_id_Theobroma_cacao_2905	XP_007034387.1; XP_007049778.1; XP_007039163.1	132; 135; 134	Pfam	PF00173; PF00173; PF00173	Cytochrome b5-like Heme/Steroid binding domain; Cytochrome b5-like Heme/Steroid binding domain; Cytochrome b5-like Heme/Steroid binding domain	IPR001199; IPR001199; IPR001199	Cytochrome b5-like heme/steroid binding domain; Cytochrome b5-like heme/steroid binding domain; Cytochrome b5-like heme/steroid binding domain
hsd_id_Theobroma_cacao_2906	XP_007034420.2; XP_007034421.2	269; 269	Pfam	PF14299, PF00646; PF14299, PF00646	Phloem protein 2, F-box domain; Phloem protein 2, F-box domain	IPR025886, IPR001810; IPR025886, IPR001810	Phloem protein 2-like, F-box domain; Phloem protein 2-like, F-box domain
hsd_id_Theobroma_cacao_2907	XP_007034526.2; XP_007034539.2	220; 220	Pfam	PF00043, PF02798; PF00043, PF02798	Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain	IPR004046, IPR004045; IPR004046, IPR004045	Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal
hsd_id_Theobroma_cacao_2908	XP_007034528.2; XP_007034537.2	209; 209	Pfam	PF02798; PF02798	Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, N-terminal domain	IPR004045; IPR004045	Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal
hsd_id_Theobroma_cacao_2909	XP_007034530.2; XP_017974868.1	228; 216	Pfam	PF00043, PF02798; PF00043, PF02798	Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain	IPR004046, IPR004045; IPR004046, IPR004045	Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal
hsd_id_Theobroma_cacao_2910	XP_007034532.2; XP_007034540.2	187; 224	Pfam	PF02798, PF00043; PF00043, PF02798	Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain; Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain	IPR004045, IPR004046; IPR004046, IPR004045	Glutathione S-transferase, N-terminal, Glutathione S-transferase, C-terminal; Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal
hsd_id_Theobroma_cacao_2911	XP_007034846.2; XP_007039068.1	466; 454	Pfam	PF13178, PF00612; PF00612, PF13178	Protein of unknown function (DUF4005), IQ calmodulin-binding motif; IQ calmodulin-binding motif, Protein of unknown function (DUF4005)	IPR025064, IPR000048; IPR000048, IPR025064	Domain of unknown function DUF4005, IQ motif, EF-hand binding site; IQ motif, EF-hand binding site, Domain of unknown function DUF4005
hsd_id_Theobroma_cacao_2912	XP_007035120.2; XP_017975637.1	240; 225	Pfam	PF02798, PF00043; PF00043, PF02798	Glutathione S-transferase, N-terminal domain, Glutathione S-transferase, C-terminal domain; Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain	IPR004045, IPR004046; IPR004046, IPR004045	Glutathione S-transferase, N-terminal, Glutathione S-transferase, C-terminal; Glutathione S-transferase, C-terminal, Glutathione S-transferase, N-terminal
hsd_id_Theobroma_cacao_2913	XP_007035137.2; XP_007050242.2	547; 560	Pfam	PF00433, PF00069; PF00433, PF00069	Protein kinase C terminal domain, Protein kinase domain; Protein kinase C terminal domain, Protein kinase domain	IPR017892, IPR000719; IPR017892, IPR000719	Protein kinase, C-terminal, Protein kinase domain; Protein kinase, C-terminal, Protein kinase domain
hsd_id_Theobroma_cacao_2914	XP_007035730.1; XP_007044496.1; XP_007044279.2	197; 250; 238	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2915	XP_007036624.2; XP_017972443.1	644; 639	Pfam	PF13947, PF00069; PF00069, PF13947	Wall-associated receptor kinase galacturonan-binding, Protein kinase domain; Protein kinase domain, Wall-associated receptor kinase galacturonan-binding	IPR025287, IPR000719; IPR000719, IPR025287	Wall-associated receptor kinase, galacturonan-binding domain, Protein kinase domain; Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain
hsd_id_Theobroma_cacao_2916	XP_007036823.2; XP_017972982.1; XP_017982309.1; XP_017976512.1	161; 204; 217; 177	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_2917	XP_007037229.2; XP_007046218.2	434; 441	Pfam	PF04431, PF00544; PF00544, PF04431	Pectate lyase, N terminus, Pectate lyase; Pectate lyase, Pectate lyase, N terminus	IPR007524, IPR002022; IPR002022, IPR007524	Pectate lyase, N-terminal, Pectate lyase; Pectate lyase, Pectate lyase, N-terminal
hsd_id_Theobroma_cacao_2918	XP_007037470.2; XP_017982070.1; XP_017969485.1	422; 396; 470	Pfam	PF00010; PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_2919	XP_007037868.1; XP_007044944.1	253; 251	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2920	XP_007037992.2; XP_007034636.2; XP_017977847.1	237; 256; 256	Pfam	PF00808; PF00808; PF00808	Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone; Histone-like transcription factor (CBF/NF-Y) and archaeal histone	IPR003958; IPR003958; IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain; Transcription factor CBF/NF-Y/archaeal histone domain
hsd_id_Theobroma_cacao_2921	XP_007038210.2; XP_007052398.1	362; 377	Pfam	PF00656, PF06943; PF00656, PF06943	Caspase domain, LSD1 zinc finger; Caspase domain, LSD1 zinc finger	-, IPR005735; -, IPR005735	-, Zinc finger, LSD1-type; -, Zinc finger, LSD1-type
hsd_id_Theobroma_cacao_2922	XP_007038574.2; XP_007040113.1	518; 522	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2923	XP_007038831.2; XP_017973573.1; XP_007051711.1	136; 128; 169	Pfam	PF00403; PF00403; PF00403	Heavy-metal-associated domain; Heavy-metal-associated domain; Heavy-metal-associated domain	IPR006121; IPR006121; IPR006121	Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA; Heavy metal-associated domain, HMA
hsd_id_Theobroma_cacao_2924	XP_007039048.1; XP_007040557.2	213; 214	Pfam	PF13499; PF13499	EF-hand domain pair; EF-hand domain pair	IPR002048; IPR002048	EF-hand domain; EF-hand domain
hsd_id_Theobroma_cacao_2925	XP_007039203.2; XP_017972343.1	776; 783	Pfam	PF17766, PF00082, PF02225, PF05922; PF02225, PF00082, PF05922, PF17766	Fibronectin type-III domain, Subtilase family, PA domain, Peptidase inhibitor I9; PA domain, Subtilase family, Peptidase inhibitor I9, Fibronectin type-III domain	IPR041469, IPR000209, IPR003137, IPR010259; IPR003137, IPR000209, IPR010259, IPR041469	Subtilisin-like protease, fibronectin type-III domain, Peptidase S8/S53 domain, PA domain, Peptidase S8 propeptide/proteinase inhibitor I9; PA domain, Peptidase S8/S53 domain, Peptidase S8 propeptide/proteinase inhibitor I9, Subtilisin-like protease, fibronectin type-III domain
hsd_id_Theobroma_cacao_2926	XP_007039212.2; XP_017975131.1	343; 347	Pfam	PF00400; PF00400	WD domain, G-beta repeat; WD domain, G-beta repeat	IPR001680; IPR001680	WD40 repeat; WD40 repeat
hsd_id_Theobroma_cacao_2927	XP_007039635.2; XP_017982189.1	387; 434	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2928	XP_007040082.1; XP_007051979.1; XP_017973057.1	215; 262; 212	Pfam	PF00319, PF01486; PF01486, PF00319; PF00319, PF01486	SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region; K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region	IPR002100, IPR002487; IPR002487, IPR002100; IPR002100, IPR002487	Transcription factor, MADS-box, Transcription factor, K-box; Transcription factor, K-box, Transcription factor, MADS-box; Transcription factor, MADS-box, Transcription factor, K-box
hsd_id_Theobroma_cacao_2929	XP_007040121.2; XP_017970720.1; XP_007024262.1; XP_007012129.1; XP_007013070.2; XP_007015927.2; XP_007042425.2; XP_007051006.2; XP_017981331.1; XP_007025491.2; XP_007008915.1; XP_017975140.1; XP_007046241.2; XP_007039780.2; XP_017984340.1; XP_017972685.1; XP_007051526.2; XP_017973052.1; XP_017976767.1; XP_017973036.1; XP_007027640.2; XP_007019867.2; XP_007047346.1; XP_007028832.2; XP_007050315.2; XP_007023382.2; XP_017982162.1; XP_007011757.1; XP_007023173.1; XP_017972842.1; XP_007011870.2; XP_017976755.1; XP_017975879.1; XP_017972039.1; XP_017979011.1; XP_017973671.1; XP_007025558.2; XP_017973866.1; XP_017974037.1; XP_007040431.2; XP_017972249.1; XP_007047994.2; XP_007039732.2; XP_017978247.1; XP_007038272.2; XP_007052303.2; XP_007052302.2; XP_007009970.2; XP_017984147.1; XP_007038277.2; XP_017976331.1; XP_007020716.1; XP_007040501.2; XP_017970714.1; XP_007043742.1; XP_007032062.2; XP_017972753.1; XP_017969966.1; XP_017976739.1; XP_017981251.1; XP_007048189.2; XP_017972100.1; XP_007035521.2; XP_007030077.2; XP_017972748.1; XP_007025492.2; XP_017985487.1; XP_007017097.1; XP_017980350.1; XP_017980907.1; XP_007040122.2; XP_007035093.2; XP_017980016.1; XP_007019013.1; XP_017974357.1; XP_007045992.2; XP_017974790.1; XP_017978766.1; XP_007017175.1; XP_007012585.2; XP_007012584.2; XP_007030307.2; XP_007050316.2; XP_007035091.1; XP_017970895.1; XP_007022239.2; XP_017975963.1; XP_007020218.1; XP_007014667.2; XP_007051933.2; XP_007044810.2; XP_007019566.2; XP_017984289.1; XP_007032619.2; XP_007012474.2	241; 333; 239; 261; 252; 277; 318; 315; 378; 281; 328; 275; 340; 237; 217; 217; 191; 229; 201; 272; 226; 193; 174; 283; 139; 178; 200; 185; 190; 239; 202; 187; 251; 236; 393; 316; 243; 269; 332; 341; 361; 378; 271; 314; 272; 229; 270; 248; 248; 224; 225; 228; 310; 312; 277; 271; 234; 226; 227; 235; 386; 473; 328; 280; 337; 184; 210; 271; 212; 206; 231; 214; 176; 216; 437; 396; 151; 172; 148; 149; 197; 213; 151; 137; 230; 143; 227; 140; 278; 283; 433; 437; 427; 412; 234	Pfam	PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847; PF00847	AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain; AP2 domain	IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471; IPR001471	AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain; AP2/ERF domain
hsd_id_Theobroma_cacao_2930	XP_007040356.2; XP_017969931.1; XP_017978072.1	319; 269; 278	Pfam	PF03106; PF03106; PF03106	WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain	IPR003657; IPR003657; IPR003657	WRKY domain; WRKY domain; WRKY domain
hsd_id_Theobroma_cacao_2931	XP_007040692.2; XP_007017401.2	376; 328	Pfam	PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930	Myb domain; Myb domain
hsd_id_Theobroma_cacao_2932	XP_007044404.2; XP_007044406.2	233; 233	Pfam	PF13410, PF02798; PF02798	Glutathione S-transferase, C-terminal domain, Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, N-terminal domain	-, IPR004045; IPR004045	-, Glutathione S-transferase, N-terminal; Glutathione S-transferase, N-terminal
hsd_id_Theobroma_cacao_2933	XP_007044708.1; XP_017974690.1; XP_017971040.1	626; 629; 624	Pfam	PF13855, PF08263, PF00069; PF00069, PF08263, PF13855; PF13855, PF08263, PF00069	Leucine rich repeat, Leucine rich repeat N-terminal domain, Protein kinase domain; Protein kinase domain, Leucine rich repeat N-terminal domain, Leucine rich repeat; Leucine rich repeat, Leucine rich repeat N-terminal domain, Protein kinase domain	IPR001611, IPR013210, IPR000719; IPR000719, IPR013210, IPR001611; IPR001611, IPR013210, IPR000719	Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Protein kinase domain; Protein kinase domain, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Protein kinase domain
hsd_id_Theobroma_cacao_2934	XP_007045211.2; XP_017972625.1	400; 330	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2935	XP_007045796.2; XP_017973950.1; XP_017974313.1	241; 244; 250	Pfam	PF01486, PF00319; PF00319, PF01486; PF01486, PF00319	K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region; K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain)	IPR002487, IPR002100; IPR002100, IPR002487; IPR002487, IPR002100	Transcription factor, K-box, Transcription factor, MADS-box; Transcription factor, MADS-box, Transcription factor, K-box; Transcription factor, K-box, Transcription factor, MADS-box
hsd_id_Theobroma_cacao_2936	XP_007045917.2; XP_017978107.1; XP_017976819.1; XP_007048873.2	301; 304; 299; 316	Pfam	PF03106; PF03106; PF03106; PF03106	WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain; WRKY DNA -binding domain	IPR003657; IPR003657; IPR003657; IPR003657	WRKY domain; WRKY domain; WRKY domain; WRKY domain
hsd_id_Theobroma_cacao_2937	XP_007047035.1; XP_017981176.1	225; 236	Pfam	PF13923; PF13923	Zinc finger, C3HC4 type (RING finger); Zinc finger, C3HC4 type (RING finger)	-; -	-; -
hsd_id_Theobroma_cacao_2938	XP_007047253.2; XP_017972252.1	678; 613	Pfam	PF00497, PF00060; PF00497, PF00060	Bacterial extracellular solute-binding proteins, family 3, Ligand-gated ion channel; Bacterial extracellular solute-binding proteins, family 3, Ligand-gated ion channel	IPR001638, IPR001320; IPR001638, IPR001320	Solute-binding protein  family 3/N-terminal domain of MltF, Ionotropic glutamate receptor; Solute-binding protein  family 3/N-terminal domain of MltF, Ionotropic glutamate receptor
hsd_id_Theobroma_cacao_2939	XP_007047882.2; XP_017971765.1	715; 681	Pfam	PF19055, PF00005, PF01061; PF01061, PF19055, PF00005	ABC-2 type transporter, ABC transporter, ABC-2 type transporter; ABC-2 type transporter, ABC-2 type transporter, ABC transporter	IPR043926, IPR003439, IPR013525; IPR013525, IPR043926, IPR003439	ABC transporter family G domain, ABC transporter-like, ATP-binding domain, ABC-2 type transporter; ABC-2 type transporter, ABC transporter family G domain, ABC transporter-like, ATP-binding domain
hsd_id_Theobroma_cacao_2940	XP_007047945.2; XP_017970953.1; XP_007042960.2	1085; 986; 1064	Pfam	PF03859, PF01833, PF00612, PF12796; PF00612, PF01833, PF12796, PF03859; PF01833, PF00612, PF12796, PF03859	CG-1 domain, IPT/TIG domain, IQ calmodulin-binding motif, Ankyrin repeats (3 copies); IQ calmodulin-binding motif, IPT/TIG domain, Ankyrin repeats (3 copies), CG-1 domain; IPT/TIG domain, IQ calmodulin-binding motif, Ankyrin repeats (3 copies), CG-1 domain	IPR005559, IPR002909, IPR000048, IPR020683; IPR000048, IPR002909, IPR020683, IPR005559; IPR002909, IPR000048, IPR020683, IPR005559	CG-1 DNA-binding domain, IPT domain, IQ motif, EF-hand binding site, Ankyrin repeat-containing domain; IQ motif, EF-hand binding site, IPT domain, Ankyrin repeat-containing domain, CG-1 DNA-binding domain; IPT domain, IQ motif, EF-hand binding site, Ankyrin repeat-containing domain, CG-1 DNA-binding domain
hsd_id_Theobroma_cacao_2941	XP_007048214.2; XP_017975677.1	242; 216	Pfam	PF08787; PF08787	Alginate lyase; Alginate lyase	IPR014895; IPR014895	Alginate lyase 2; Alginate lyase 2
hsd_id_Theobroma_cacao_2942	XP_007048279.2; XP_017971595.1	777; 777	Pfam	PF00954, PF01453, PF00069; PF01453, PF00954, PF00069	S-locus glycoprotein domain, D-mannose binding lectin, Protein kinase domain; D-mannose binding lectin, S-locus glycoprotein domain, Protein kinase domain	IPR000858, IPR001480, IPR000719; IPR001480, IPR000858, IPR000719	S-locus glycoprotein domain, Bulb-type lectin domain, Protein kinase domain; Bulb-type lectin domain, S-locus glycoprotein domain, Protein kinase domain
hsd_id_Theobroma_cacao_2943	XP_007049015.1; XP_017969855.1	135; 135	Pfam	PF01777; PF01777, PF00467	Ribosomal L27e protein family; Ribosomal L27e protein family, KOW motif	IPR001141; IPR001141, IPR005824	Ribosomal protein L27e; Ribosomal protein L27e, KOW
hsd_id_Theobroma_cacao_2944	XP_007050979.2; XP_017978321.1	251; 155	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2945	XP_007051057.1; XP_007044279.2	193; 238	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2946	XP_007051755.1; XP_017971469.1	190; 231	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2947	XP_007051878.2; XP_007051879.2	297; 313	Pfam	PF00106; PF00106	short chain dehydrogenase; short chain dehydrogenase	IPR002347; IPR002347	Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR
hsd_id_Theobroma_cacao_2948	XP_007051880.2; XP_017978508.1	297; 297	Pfam	PF00106; PF00106, PF13561	short chain dehydrogenase; short chain dehydrogenase, Enoyl-(Acyl carrier protein) reductase	IPR002347; IPR002347, -	Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR, -
hsd_id_Theobroma_cacao_2949	XP_007052281.2; XP_017977138.1; XP_007039762.2	295; 358; 300	Pfam	PF00046, PF02183, PF04618; PF02183, PF04618, PF00046; PF04618, PF00046, PF02183	Homeodomain, Homeobox associated leucine zipper, HD-ZIP protein N terminus; Homeobox associated leucine zipper, HD-ZIP protein N terminus, Homeodomain; HD-ZIP protein N terminus, Homeodomain, Homeobox associated leucine zipper	IPR001356, IPR003106, IPR006712; IPR003106, IPR006712, IPR001356; IPR006712, IPR001356, IPR003106	Homeobox domain, Leucine zipper, homeobox-associated, HD-ZIP protein, N-terminal; Leucine zipper, homeobox-associated, HD-ZIP protein, N-terminal, Homeobox domain; HD-ZIP protein, N-terminal, Homeobox domain, Leucine zipper, homeobox-associated
hsd_id_Theobroma_cacao_2950	XP_007052342.2; XP_017980059.1	623; 631	Pfam	PF13947, PF00069; PF13947, PF07714	Wall-associated receptor kinase galacturonan-binding, Protein kinase domain; Wall-associated receptor kinase galacturonan-binding, Protein tyrosine and serine/threonine kinase	IPR025287, IPR000719; IPR025287, IPR001245	Wall-associated receptor kinase, galacturonan-binding domain, Protein kinase domain; Wall-associated receptor kinase, galacturonan-binding domain, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_2951	XP_007052345.2; XP_017980070.1; XP_017974022.1; XP_017970785.1	575; 622; 610; 679	Pfam	PF13947, PF00069; PF00069, PF13947; PF13947, PF00069; PF13947, PF00069	Wall-associated receptor kinase galacturonan-binding, Protein kinase domain; Protein kinase domain, Wall-associated receptor kinase galacturonan-binding; Wall-associated receptor kinase galacturonan-binding, Protein kinase domain; Wall-associated receptor kinase galacturonan-binding, Protein kinase domain	IPR025287, IPR000719; IPR000719, IPR025287; IPR025287, IPR000719; IPR025287, IPR000719	Wall-associated receptor kinase, galacturonan-binding domain, Protein kinase domain; Protein kinase domain, Wall-associated receptor kinase, galacturonan-binding domain; Wall-associated receptor kinase, galacturonan-binding domain, Protein kinase domain; Wall-associated receptor kinase, galacturonan-binding domain, Protein kinase domain
hsd_id_Theobroma_cacao_2952	XP_017969510.1; XP_017978806.1; XP_017980812.1	228; 241; 222	Pfam	PF00319, PF01486; PF01486, PF00319; PF00319, PF01486	SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region; K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region	IPR002100, IPR002487; IPR002487, IPR002100; IPR002100, IPR002487	Transcription factor, MADS-box, Transcription factor, K-box; Transcription factor, K-box, Transcription factor, MADS-box; Transcription factor, MADS-box, Transcription factor, K-box
hsd_id_Theobroma_cacao_2953	XP_017969593.1; XP_017982025.1	321; 295	Pfam	PF00106; PF00106	short chain dehydrogenase; short chain dehydrogenase	IPR002347; IPR002347	Short-chain dehydrogenase/reductase SDR; Short-chain dehydrogenase/reductase SDR
hsd_id_Theobroma_cacao_2954	XP_017969750.1; XP_007040139.2	541; 506	Pfam	PF13178, PF00612; PF13178, PF00612	Protein of unknown function (DUF4005), IQ calmodulin-binding motif; Protein of unknown function (DUF4005), IQ calmodulin-binding motif	IPR025064, IPR000048; IPR025064, IPR000048	Domain of unknown function DUF4005, IQ motif, EF-hand binding site; Domain of unknown function DUF4005, IQ motif, EF-hand binding site
hsd_id_Theobroma_cacao_2955	XP_017969913.1; XP_017981874.1; XP_007047858.2; XP_007037212.1; XP_007044376.2; XP_007032488.1; XP_007031433.2; XP_017973915.1; XP_017971986.1	238; 279; 330; 334; 319; 283; 276; 233; 287	Pfam	PF00046, PF02183; PF00046, PF02183; PF00046, PF02183; PF02183, PF00046; PF02183, PF00046; PF00046, PF02183; PF02183, PF00046; PF00046, PF02183; PF00046, PF02183	Homeodomain, Homeobox associated leucine zipper; Homeodomain, Homeobox associated leucine zipper; Homeodomain, Homeobox associated leucine zipper; Homeobox associated leucine zipper, Homeodomain; Homeobox associated leucine zipper, Homeodomain; Homeodomain, Homeobox associated leucine zipper; Homeobox associated leucine zipper, Homeodomain; Homeodomain, Homeobox associated leucine zipper; Homeodomain, Homeobox associated leucine zipper	IPR001356, IPR003106; IPR001356, IPR003106; IPR001356, IPR003106; IPR003106, IPR001356; IPR003106, IPR001356; IPR001356, IPR003106; IPR003106, IPR001356; IPR001356, IPR003106; IPR001356, IPR003106	Homeobox domain, Leucine zipper, homeobox-associated; Homeobox domain, Leucine zipper, homeobox-associated; Homeobox domain, Leucine zipper, homeobox-associated; Leucine zipper, homeobox-associated, Homeobox domain; Leucine zipper, homeobox-associated, Homeobox domain; Homeobox domain, Leucine zipper, homeobox-associated; Leucine zipper, homeobox-associated, Homeobox domain; Homeobox domain, Leucine zipper, homeobox-associated; Homeobox domain, Leucine zipper, homeobox-associated
hsd_id_Theobroma_cacao_2956	XP_017970184.1; XP_017970206.1; XP_017981098.1	85; 95; 86	Pfam	PF00249; PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930; IPR017930	Myb domain; Myb domain; Myb domain
hsd_id_Theobroma_cacao_2957	XP_017970222.1; XP_017974672.1; XP_017982304.1	404; 324; 334	Pfam	PF13359; PF13359; PF13359	DDE superfamily endonuclease; DDE superfamily endonuclease; DDE superfamily endonuclease	IPR027806; IPR027806; IPR027806	Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain
hsd_id_Theobroma_cacao_2958	XP_017970272.1; XP_017982213.1; XP_017982220.1; XP_017971646.1; XP_017970272.1; XP_017982213.1; XP_017982220.1; XP_017971646.1; XP_017970272.1; XP_017982213.1; XP_017982220.1; XP_017971646.1; XP_017978483.1	453; 453; 453; 453; 453; 453; 453; 453; 453; 453; 453; 453; 391	Pfam	PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732; PF00098, PF03732	Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein; Zinc knuckle, Retrotransposon gag protein	IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162; IPR001878, IPR005162	Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain; Zinc finger, CCHC-type, Retrotransposon gag domain
hsd_id_Theobroma_cacao_2959	XP_017970301.1; XP_017984450.1; XP_017980567.1; XP_017976469.1; XP_017970396.1; XP_017982960.1; XP_017978279.1; XP_017972498.1; XP_017974821.1; XP_017985243.1; XP_017982583.1; XP_017970610.1; XP_017985285.1; XP_017985403.1; XP_017985269.1	255; 255; 255; 255; 255; 255; 255; 255; 255; 255; 255; 255; 255; 255; 255	Pfam	PF00098; PF00098; PF00098; PF00098; PF00098; PF00098; PF00098; PF00098; PF00098; PF00098; PF00098; PF00098; PF00098; PF00098; PF00098	Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle; Zinc knuckle	IPR001878; IPR001878; IPR001878; IPR001878; IPR001878; IPR001878; IPR001878; IPR001878; IPR001878; IPR001878; IPR001878; IPR001878; IPR001878; IPR001878; IPR001878	Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type; Zinc finger, CCHC-type
hsd_id_Theobroma_cacao_2960	XP_017970307.1; XP_017974435.1; XP_017976405.1; XP_017970332.1; XP_017970307.1; XP_017985214.1	178; 131; 202; 168; 178; 271	Pfam	PF07727; PF07727; PF07727; PF07727; PF07727; PF07727	Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase)	IPR013103; IPR013103; IPR013103; IPR013103; IPR013103; IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase
hsd_id_Theobroma_cacao_2961	XP_017970375.1; XP_017972497.1; XP_017970441.1	453; 453; 443	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2962	XP_017970376.1; XP_017982275.1	632; 641	Pfam	PF03732; PF03732	Retrotransposon gag protein; Retrotransposon gag protein	IPR005162; IPR005162	Retrotransposon gag domain; Retrotransposon gag domain
hsd_id_Theobroma_cacao_2963	XP_017970387.1; XP_017972866.1; XP_017972532.1; XP_017970446.1; XP_017973072.1; XP_017972529.1; XP_017982314.1; XP_017972503.1; XP_017976421.1; XP_017970390.1	181; 184; 174; 173; 164; 172; 165; 169; 181; 165	Pfam	; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; 
hsd_id_Theobroma_cacao_2964	XP_017970393.1; XP_017972511.1	214; 195	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2965	XP_017970406.1; XP_017979866.1; XP_017976396.1	192; 186; 180	Pfam	PF13456; PF13456; PF13456	Reverse transcriptase-like; Reverse transcriptase-like; Reverse transcriptase-like	IPR002156; IPR002156; IPR002156	Ribonuclease H domain; Ribonuclease H domain; Ribonuclease H domain
hsd_id_Theobroma_cacao_2966	XP_017970410.1; XP_017976434.1; XP_017979880.1	220; 170; 160	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2967	XP_017970428.1; XP_017974461.1	247; 284	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2968	XP_017970432.1; XP_017972540.1; XP_017970444.1; XP_017982348.1; XP_017970432.1; XP_017972540.1; XP_017970444.1; XP_017982348.1; XP_017970432.1; XP_017972540.1; XP_017970444.1; XP_017972531.1; XP_017982348.1	166; 166; 163; 173; 166; 166; 163; 173; 166; 166; 163; 150; 173	Pfam	PF14223; PF14223; PF14223; PF14223; PF14223; PF14223; PF14223; PF14223; PF14223; PF14223; PF14223; PF14223; PF14223	gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type	-; -; -; -; -; -; -; -; -; -; -; -; -	-; -; -; -; -; -; -; -; -; -; -; -; -
hsd_id_Theobroma_cacao_2969	XP_017970433.1; XP_017976418.1	491; 487	Pfam	; PF03732	; Retrotransposon gag protein	; IPR005162	; Retrotransposon gag domain
hsd_id_Theobroma_cacao_2970	XP_017970434.1; XP_017970437.1; XP_017981003.1; XP_017973298.1	217; 231; 233; 249	Pfam	; ; ; 	; ; ; 	; ; ; 	; ; ; 
hsd_id_Theobroma_cacao_2971	XP_017970437.1; XP_017981003.1	231; 233	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2972	XP_017970447.1; XP_017982382.1	213; 197	Pfam	PF14223; PF14223	gag-polypeptide of LTR copia-type; gag-polypeptide of LTR copia-type	-; -	-; -
hsd_id_Theobroma_cacao_2973	XP_017970452.1; XP_017974459.1; XP_017970452.1; XP_017982311.1; XP_017984308.1	285; 275; 285; 340; 400	Pfam	; ; ; ; 	; ; ; ; 	; ; ; ; 	; ; ; ; 
hsd_id_Theobroma_cacao_2974	XP_017970478.1; XP_017974500.1; XP_017972747.1; XP_017980944.1; XP_017982276.1; XP_017976387.1; XP_017974611.1; XP_017976393.1	310; 313; 311; 311; 322; 332; 356; 343	Pfam	PF07727; PF07727; PF07727; PF07727; PF07727; PF07727; PF07727; PF07727	Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase)	IPR013103; IPR013103; IPR013103; IPR013103; IPR013103; IPR013103; IPR013103; IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase
hsd_id_Theobroma_cacao_2975	XP_017970486.1; XP_017970487.1	277; 230	Pfam	PF13639; PF13639	Ring finger domain; Ring finger domain	IPR001841; IPR001841	Zinc finger, RING-type; Zinc finger, RING-type
hsd_id_Theobroma_cacao_2976	XP_017970492.1; XP_017976528.1	2380; 2370	Pfam	PF03732, PF00078, PF13456, PF17919; PF17921, PF17919, PF00078, PF03732, PF13456, PF00665	Retrotransposon gag protein, Reverse transcriptase (RNA-dependent DNA polymerase), Reverse transcriptase-like, RNase H-like domain found in reverse transcriptase; Integrase zinc binding domain, RNase H-like domain found in reverse transcriptase, Reverse transcriptase (RNA-dependent DNA polymerase), Retrotransposon gag protein, Reverse transcriptase-like, Integrase core domain	IPR005162, IPR000477, IPR002156, IPR041577; IPR041588, IPR041577, IPR000477, IPR005162, IPR002156, IPR001584	Retrotransposon gag domain, Reverse transcriptase domain, Ribonuclease H domain, Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain; Integrase zinc-binding domain, Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain, Reverse transcriptase domain, Retrotransposon gag domain, Ribonuclease H domain, Integrase, catalytic core
hsd_id_Theobroma_cacao_2977	XP_017970522.1; XP_017971636.1	411; 407	Pfam	PF00226; PF00226	DnaJ domain; DnaJ domain	IPR001623; IPR001623	DnaJ domain; DnaJ domain
hsd_id_Theobroma_cacao_2978	XP_017970632.1; XP_017971769.1	217; 144	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2979	XP_017970693.1; XP_017985280.1; XP_017985327.1; XP_017970693.1; XP_017985280.1; XP_017985327.1; XP_017970693.1; XP_017985280.1; XP_017985327.1; XP_017974488.1	160; 139; 139; 160; 139; 139; 160; 139; 139; 212	Pfam	; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; ; 
hsd_id_Theobroma_cacao_2980	XP_017971541.1; XP_017981392.1; XP_017972340.1	239; 283; 221	Pfam	PF01486, PF00319; PF00319, PF01486; PF01486, PF00319	K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain); SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region; K-box region, SRF-type transcription factor (DNA-binding and dimerisation domain)	IPR002487, IPR002100; IPR002100, IPR002487; IPR002487, IPR002100	Transcription factor, K-box, Transcription factor, MADS-box; Transcription factor, MADS-box, Transcription factor, K-box; Transcription factor, K-box, Transcription factor, MADS-box
hsd_id_Theobroma_cacao_2981	XP_017971628.1; XP_007027297.2; XP_007045370.2	589; 494; 594	Pfam	PF12171; PF12171; PF12171	Zinc-finger double-stranded RNA-binding; Zinc-finger double-stranded RNA-binding; Zinc-finger double-stranded RNA-binding	IPR022755; IPR022755; IPR022755	Zinc finger, double-stranded RNA binding; Zinc finger, double-stranded RNA binding; Zinc finger, double-stranded RNA binding
hsd_id_Theobroma_cacao_2982	XP_017971914.1; XP_017972092.1	519; 520	Pfam	PF13450, PF08491; PF13450, PF08491	NAD(P)-binding Rossmann-like domain, Squalene epoxidase; NAD(P)-binding Rossmann-like domain, Squalene epoxidase	-, IPR013698; -, IPR013698	-, Squalene epoxidase; -, Squalene epoxidase
hsd_id_Theobroma_cacao_2983	XP_017972264.1; XP_017984317.1; XP_017984305.1; XP_017972276.1; XP_017972264.1; XP_017978308.1; XP_017984317.1; XP_017984305.1; XP_017972276.1	490; 471; 484; 489; 490; 529; 471; 484; 489	Pfam	; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; 
hsd_id_Theobroma_cacao_2984	XP_017972412.1; XP_007040139.2	533; 506	Pfam	PF13178, PF00612; PF13178, PF00612	Protein of unknown function (DUF4005), IQ calmodulin-binding motif; Protein of unknown function (DUF4005), IQ calmodulin-binding motif	IPR025064, IPR000048; IPR025064, IPR000048	Domain of unknown function DUF4005, IQ motif, EF-hand binding site; Domain of unknown function DUF4005, IQ motif, EF-hand binding site
hsd_id_Theobroma_cacao_2985	XP_017972430.1; XP_007011366.2	361; 377	Pfam	PF03106; PF03106	WRKY DNA -binding domain; WRKY DNA -binding domain	IPR003657; IPR003657	WRKY domain; WRKY domain
hsd_id_Theobroma_cacao_2986	XP_017972454.1; XP_017972483.1	490; 478	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_2987	XP_017972480.1; XP_017978295.1	346; 346	Pfam	PF00665, PF13456; PF13456, PF17921	Integrase core domain, Reverse transcriptase-like; Reverse transcriptase-like, Integrase zinc binding domain	IPR001584, IPR002156; IPR002156, IPR041588	Integrase, catalytic core, Ribonuclease H domain; Ribonuclease H domain, Integrase zinc-binding domain
hsd_id_Theobroma_cacao_2988	XP_017972491.1; XP_017976374.1; XP_017980981.1	213; 212; 282	Pfam	PF14223, PF13961; PF14223, PF13961; PF13961, PF14223	gag-polypeptide of LTR copia-type, Domain of unknown function (DUF4219); gag-polypeptide of LTR copia-type, Domain of unknown function (DUF4219); Domain of unknown function (DUF4219), gag-polypeptide of LTR copia-type	-, IPR025314; -, IPR025314; IPR025314, -	-, Domain of unknown function DUF4219; -, Domain of unknown function DUF4219; Domain of unknown function DUF4219, -
hsd_id_Theobroma_cacao_2989	XP_017972499.1; XP_017985256.1; XP_017976417.1	608; 588; 594	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2990	XP_017972508.1; XP_017972521.1; XP_017972508.1; XP_017972521.1; XP_017972508.1; XP_017979882.1	194; 198; 194; 198; 194; 211	Pfam	PF00078; PF00078; PF00078; PF00078; PF00078; PF00078	Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase)	IPR000477; IPR000477; IPR000477; IPR000477; IPR000477; IPR000477	Reverse transcriptase domain; Reverse transcriptase domain; Reverse transcriptase domain; Reverse transcriptase domain; Reverse transcriptase domain; Reverse transcriptase domain
hsd_id_Theobroma_cacao_2991	XP_017972516.1; XP_017981032.1	161; 153	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2992	XP_017972546.1; XP_017984312.1	233; 267	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2993	XP_017972568.1; XP_017982808.1	443; 449	Pfam	PF12796; PF12796	Ankyrin repeats (3 copies); Ankyrin repeats (3 copies)	IPR020683; IPR020683	Ankyrin repeat-containing domain; Ankyrin repeat-containing domain
hsd_id_Theobroma_cacao_2994	XP_017972605.1; XP_017976436.1	178; 178	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_2995	XP_017972747.1; XP_017982276.1; XP_017978303.1; XP_017976387.1; XP_017979696.1; XP_017974611.1	311; 322; 403; 332; 427; 356	Pfam	PF07727; PF07727; PF07727; PF07727; PF07727; PF07727	Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase)	IPR013103; IPR013103; IPR013103; IPR013103; IPR013103; IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase
hsd_id_Theobroma_cacao_2996	XP_017985319.1; XP_017972751.1; XP_017983136.1	284; 284; 284	Pfam	PF08646; PF08646; 	Replication factor-A C terminal domain; Replication factor-A C terminal domain; 	IPR013955; IPR013955; 	Replication factor A, C-terminal; Replication factor A, C-terminal; 
hsd_id_Theobroma_cacao_2997	XP_017972762.1; XP_017985397.1	435; 413	Pfam	PF10551, PF03108; PF03108, PF10551	MULE transposase domain, MuDR family transposase; MuDR family transposase, MULE transposase domain	IPR018289, IPR004332; IPR004332, IPR018289	MULE transposase domain, Transposase, MuDR, plant; Transposase, MuDR, plant, MULE transposase domain
hsd_id_Theobroma_cacao_2998	XP_017972807.1; XP_017982368.1; XP_017982329.1	167; 265; 191	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_2999	XP_017973053.1; XP_017976424.1; XP_017984327.1; XP_017984330.1; XP_017982347.1	191; 182; 172; 169; 159	Pfam	PF17921; PF17921; PF17921; PF17921; PF17921	Integrase zinc binding domain; Integrase zinc binding domain; Integrase zinc binding domain; Integrase zinc binding domain; Integrase zinc binding domain	IPR041588; IPR041588; IPR041588; IPR041588; IPR041588	Integrase zinc-binding domain; Integrase zinc-binding domain; Integrase zinc-binding domain; Integrase zinc-binding domain; Integrase zinc-binding domain
hsd_id_Theobroma_cacao_3000	XP_017973108.1; XP_017973225.1	111; 125	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_3001	XP_017973201.1; XP_017976175.1; XP_017980390.1	398; 343; 315	Pfam	PF00069; PF00069; PF00069	Protein kinase domain; Protein kinase domain; Protein kinase domain	IPR000719; IPR000719; IPR000719	Protein kinase domain; Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_3002	XP_017973287.1; XP_017974478.1	244; 234	Pfam	PF00078, PF08284; 	Reverse transcriptase (RNA-dependent DNA polymerase), Retroviral aspartyl protease; 	IPR000477, -; 	Reverse transcriptase domain, -; 
hsd_id_Theobroma_cacao_3003	XP_017973550.1; XP_017985251.1	203; 207	Pfam	PF13456; PF13456	Reverse transcriptase-like; Reverse transcriptase-like	IPR002156; IPR002156	Ribonuclease H domain; Ribonuclease H domain
hsd_id_Theobroma_cacao_3004	XP_017973768.1; XP_017982386.1	155; 158	Pfam	PF13456; PF13456	Reverse transcriptase-like; Reverse transcriptase-like	IPR002156; IPR002156	Ribonuclease H domain; Ribonuclease H domain
hsd_id_Theobroma_cacao_3005	XP_017973959.1; XP_017979780.1; XP_017984271.1	620; 615; 627	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_3006	XP_017974115.1; XP_017984343.1	1028; 1005	Pfam	PF08263, PF00560, PF13855; PF13855, PF08263, PF00560	Leucine rich repeat N-terminal domain, Leucine Rich Repeat, Leucine rich repeat; Leucine rich repeat, Leucine rich repeat N-terminal domain, Leucine Rich Repeat	IPR013210, IPR001611, IPR001611; IPR001611, IPR013210, IPR001611	Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat
hsd_id_Theobroma_cacao_3007	XP_017974871.1; XP_017974290.1	273; 273	Pfam	PF00187, PF00182; PF00187, PF00182	Chitin recognition protein, Chitinase class I; Chitin recognition protein, Chitinase class I	IPR001002, IPR000726; IPR001002, IPR000726	Chitin-binding, type 1, Glycoside hydrolase, family 19, catalytic; Chitin-binding, type 1, Glycoside hydrolase, family 19, catalytic
hsd_id_Theobroma_cacao_3008	XP_017974476.1; XP_017976429.1; XP_017976443.1; XP_017974476.1; XP_017976429.1; XP_017976443.1; XP_017982350.1; XP_017974476.1; XP_017984312.1	170; 162; 162; 170; 162; 162; 173; 170; 267	Pfam	; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; 	; ; ; ; ; ; ; ; 
hsd_id_Theobroma_cacao_3009	XP_017974489.1; XP_017985356.1	292; 320	Pfam	PF03732; PF03732	Retrotransposon gag protein; Retrotransposon gag protein	IPR005162; IPR005162	Retrotransposon gag domain; Retrotransposon gag domain
hsd_id_Theobroma_cacao_3010	XP_017974498.1; XP_017981035.1	272; 234	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_3011	XP_017974508.1; XP_017974604.1	153; 161	Pfam	PF13456; PF13456	Reverse transcriptase-like; Reverse transcriptase-like	IPR002156; IPR002156	Ribonuclease H domain; Ribonuclease H domain
hsd_id_Theobroma_cacao_3012	XP_017974521.1; XP_007046296.1	327; 388	Pfam	PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930	Myb domain; Myb domain
hsd_id_Theobroma_cacao_3013	XP_017974635.1; XP_017975208.1; XP_017974636.1; XP_017974801.1; XP_017984226.1; XP_017984228.1; XP_017984227.1	743; 755; 742; 747; 747; 748; 799	Pfam	PF14310, PF01915, PF00933; PF01915, PF00933, PF14310; PF00933, PF14310, PF01915; PF01915, PF00933, PF14310; PF14310, PF01915, PF00933; PF14310, PF01915, PF00933; PF01915, PF14310, PF00933	Fibronectin type III-like domain, Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain, Fibronectin type III-like domain; Glycosyl hydrolase family 3 N terminal domain, Fibronectin type III-like domain, Glycosyl hydrolase family 3 C-terminal domain; Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain, Fibronectin type III-like domain; Fibronectin type III-like domain, Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain; Fibronectin type III-like domain, Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 C-terminal domain, Fibronectin type III-like domain, Glycosyl hydrolase family 3 N terminal domain	IPR026891, IPR002772, IPR001764; IPR002772, IPR001764, IPR026891; IPR001764, IPR026891, IPR002772; IPR002772, IPR001764, IPR026891; IPR026891, IPR002772, IPR001764; IPR026891, IPR002772, IPR001764; IPR002772, IPR026891, IPR001764	Fibronectin type III-like domain, Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal, Fibronectin type III-like domain; Glycoside hydrolase, family 3, N-terminal, Fibronectin type III-like domain, Glycoside hydrolase family 3 C-terminal domain; Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal, Fibronectin type III-like domain; Fibronectin type III-like domain, Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal; Fibronectin type III-like domain, Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase family 3 C-terminal domain, Fibronectin type III-like domain, Glycoside hydrolase, family 3, N-terminal
hsd_id_Theobroma_cacao_3014	XP_017976031.1; XP_017977946.1	306; 304	Pfam	PF13561; PF13561	Enoyl-(Acyl carrier protein) reductase; Enoyl-(Acyl carrier protein) reductase	-; -	-; -
hsd_id_Theobroma_cacao_3015	XP_017976241.1; XP_007040692.2	368; 376	Pfam	PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930	Myb domain; Myb domain
hsd_id_Theobroma_cacao_3016	XP_017976385.1; XP_017976535.1	166; 137	Pfam	PF04434; PF04434	SWIM zinc finger; SWIM zinc finger	IPR007527; IPR007527	Zinc finger, SWIM-type; Zinc finger, SWIM-type
hsd_id_Theobroma_cacao_3017	XP_017976393.1; XP_017979725.1	343; 393	Pfam	PF07727; PF07727	Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase)	IPR013103; IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase; Reverse transcriptase, RNA-dependent DNA polymerase
hsd_id_Theobroma_cacao_3018	XP_017976400.1; XP_017982315.1; XP_017978266.1	157; 146; 145	Pfam	; ; 	; ; 	; ; 	; ; 
hsd_id_Theobroma_cacao_3019	XP_017976408.1; XP_017980984.1	404; 409	Pfam	PF00665; PF00665	Integrase core domain; Integrase core domain	IPR001584; IPR001584	Integrase, catalytic core; Integrase, catalytic core
hsd_id_Theobroma_cacao_3020	XP_017976435.1; XP_017984323.1	286; 199	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_3021	XP_017976448.1; XP_017984325.1	193; 226	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_3022	XP_017976459.1; XP_017979877.1; XP_017985356.1	355; 367; 320	Pfam	PF03732; PF03732; PF03732	Retrotransposon gag protein; Retrotransposon gag protein; Retrotransposon gag protein	IPR005162; IPR005162; IPR005162	Retrotransposon gag domain; Retrotransposon gag domain; Retrotransposon gag domain
hsd_id_Theobroma_cacao_3023	XP_017976520.1; XP_017976522.1	539; 519	Pfam	PF00931, PF18052; PF00931, PF18052	NB-ARC domain, Rx N-terminal domain; NB-ARC domain, Rx N-terminal domain	IPR002182, IPR041118; IPR002182, IPR041118	NB-ARC, Rx, N-terminal; NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_3024	XP_017976586.1; XP_017976697.1	220; 185	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_3025	XP_017976652.1; XP_017985426.1	542; 538	Pfam	PF00096; PF00096	Zinc finger, C2H2 type; Zinc finger, C2H2 type	IPR013087; IPR013087	Zinc finger C2H2-type; Zinc finger C2H2-type
hsd_id_Theobroma_cacao_3026	XP_017976746.1; XP_017977894.1; XP_017984150.1	599; 611; 624	Pfam	PF06813, PF07690; PF06813, PF07690; PF07690, PF06813	Nodulin-like, Major Facilitator Superfamily; Nodulin-like, Major Facilitator Superfamily; Major Facilitator Superfamily, Nodulin-like	IPR010658, IPR011701; IPR010658, IPR011701; IPR011701, IPR010658	Nodulin-like, Major facilitator superfamily; Nodulin-like, Major facilitator superfamily; Major facilitator superfamily, Nodulin-like
hsd_id_Theobroma_cacao_3027	XP_017976759.1; XP_017984524.1; XP_017978307.1; XP_017984320.1	195; 187; 122; 175	Pfam	PF13359; PF13359; PF13359; PF13359	DDE superfamily endonuclease; DDE superfamily endonuclease; DDE superfamily endonuclease; DDE superfamily endonuclease	IPR027806; IPR027806; IPR027806; IPR027806	Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain; Harbinger transposase-derived nuclease domain
hsd_id_Theobroma_cacao_3028	XP_017977165.1; XP_017977166.1	1033; 1033	Pfam	PF00560, PF00069, PF08263; PF08263, PF00560, PF13855, PF00069	Leucine Rich Repeat, Protein kinase domain, Leucine rich repeat N-terminal domain; Leucine rich repeat N-terminal domain, Leucine Rich Repeat, Leucine rich repeat, Protein kinase domain	IPR001611, IPR000719, IPR013210; IPR013210, IPR001611, IPR001611, IPR000719	Leucine-rich repeat, Protein kinase domain, Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat, Protein kinase domain
hsd_id_Theobroma_cacao_3029	XP_017977217.1; XP_017983431.1; XP_017981673.1	505; 516; 544	Pfam	PF01554; PF01554; PF01554	MatE; MatE; MatE	IPR002528; IPR002528; IPR002528	Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein; Multi antimicrobial extrusion protein
hsd_id_Theobroma_cacao_3030	XP_017977270.1; XP_017977404.1	476; 376	Pfam	PF00170, PF14144; PF14144, PF00170	bZIP transcription factor, Seed dormancy control; Seed dormancy control, bZIP transcription factor	IPR004827, IPR025422; IPR025422, IPR004827	Basic-leucine zipper domain, Transcription factor TGA like domain; Transcription factor TGA like domain, Basic-leucine zipper domain
hsd_id_Theobroma_cacao_3031	XP_017977610.1; XP_017982688.1	316; 364	Pfam	PF00249; PF00249	Myb-like DNA-binding domain; Myb-like DNA-binding domain	IPR017930; IPR017930	Myb domain; Myb domain
hsd_id_Theobroma_cacao_3032	XP_017978203.1; XP_007024528.2	1251; 1221	Pfam	PF16209, PF13246, PF16212; PF16212, PF16209, PF13246	Phospholipid-translocating ATPase N-terminal, Cation transport ATPase (P-type), Phospholipid-translocating P-type ATPase C-terminal; Phospholipid-translocating P-type ATPase C-terminal, Phospholipid-translocating ATPase N-terminal, Cation transport ATPase (P-type)	IPR032631, -, IPR032630; IPR032630, IPR032631, -	P-type ATPase, N-terminal, -, P-type ATPase, C-terminal; P-type ATPase, C-terminal, P-type ATPase, N-terminal, -
hsd_id_Theobroma_cacao_3033	XP_017978234.1; XP_017978839.1; XP_017978860.1; XP_017978859.1	1224; 1233; 1225; 1328	Pfam	PF01582, PF00931; PF00931, PF01582; PF00931, PF01582; PF01582, PF00931	TIR domain, NB-ARC domain; NB-ARC domain, TIR domain; NB-ARC domain, TIR domain; TIR domain, NB-ARC domain	IPR000157, IPR002182; IPR002182, IPR000157; IPR002182, IPR000157; IPR000157, IPR002182	Toll/interleukin-1 receptor homology (TIR) domain, NB-ARC; NB-ARC, Toll/interleukin-1 receptor homology (TIR) domain; NB-ARC, Toll/interleukin-1 receptor homology (TIR) domain; Toll/interleukin-1 receptor homology (TIR) domain, NB-ARC
hsd_id_Theobroma_cacao_3034	XP_017978243.1; XP_017979868.1	846; 890	Pfam	PF00078; PF00078	Reverse transcriptase (RNA-dependent DNA polymerase); Reverse transcriptase (RNA-dependent DNA polymerase)	IPR000477; IPR000477	Reverse transcriptase domain; Reverse transcriptase domain
hsd_id_Theobroma_cacao_3035	XP_017978326.1; XP_017978566.1; XP_017978565.1	1035; 1032; 1055	Pfam	PF11721, PF07714; PF11721, PF07714; PF11721, PF07714	Malectin domain, Protein tyrosine and serine/threonine kinase; Malectin domain, Protein tyrosine and serine/threonine kinase; Malectin domain, Protein tyrosine and serine/threonine kinase	IPR021720, IPR001245; IPR021720, IPR001245; IPR021720, IPR001245	Malectin domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Malectin domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Malectin domain, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_3036	XP_017978327.1; XP_017981010.1	256; 234	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_3037	XP_017978339.1; XP_017985326.1	794; 786	Pfam	PF07714, PF00560, PF13855; PF00560, PF13855, PF07714	Protein tyrosine and serine/threonine kinase, Leucine Rich Repeat, Leucine rich repeat; Leucine Rich Repeat, Leucine rich repeat, Protein tyrosine and serine/threonine kinase	IPR001245, IPR001611, IPR001611; IPR001611, IPR001611, IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain, Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_3038	XP_017978374.1; XP_017978387.1	680; 625	Pfam	PF07714, PF01657; PF01657, PF07714	Protein tyrosine and serine/threonine kinase, Salt stress response/antifungal; Salt stress response/antifungal, Protein tyrosine and serine/threonine kinase	IPR001245, IPR002902; IPR002902, IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain, Gnk2-homologous domain; Gnk2-homologous domain, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_3039	XP_017978380.1; XP_017978384.1; XP_007025943.2	668; 662; 672	Pfam	PF01657, PF07714; PF01657, PF07714; PF01657, PF07714	Salt stress response/antifungal, Protein tyrosine and serine/threonine kinase; Salt stress response/antifungal, Protein tyrosine and serine/threonine kinase; Salt stress response/antifungal, Protein tyrosine and serine/threonine kinase	IPR002902, IPR001245; IPR002902, IPR001245; IPR002902, IPR001245	Gnk2-homologous domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Gnk2-homologous domain, Serine-threonine/tyrosine-protein kinase, catalytic domain; Gnk2-homologous domain, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_3040	XP_017979447.1; XP_017979449.1	908; 908	Pfam	PF02171, PF02170, PF16486; PF16486, PF16488, PF02170, PF02171	Piwi domain, PAZ domain, N-terminal domain of argonaute; N-terminal domain of argonaute, Argonaute linker 2 domain, PAZ domain, Piwi domain	IPR003165, IPR003100, IPR032474; IPR032474, IPR032472, IPR003100, IPR003165	Piwi domain, PAZ domain, Protein argonaute, N-terminal; Protein argonaute, N-terminal, Argonaute linker 2 domain, PAZ domain, Piwi domain
hsd_id_Theobroma_cacao_3041	XP_017979591.1; XP_017985267.1; XP_017979850.1	503; 466; 525	Pfam	PF03140; PF03140; PF03140	Plant protein of unknown function; Plant protein of unknown function; Plant protein of unknown function	IPR004158; IPR004158; IPR004158	Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant; Protein of unknown function DUF247, plant
hsd_id_Theobroma_cacao_3042	XP_017979625.1; XP_017979800.1	677; 655	Pfam	PF00560, PF13855, PF08263; PF00560, PF08263, PF13855	Leucine Rich Repeat, Leucine rich repeat, Leucine rich repeat N-terminal domain; Leucine Rich Repeat, Leucine rich repeat N-terminal domain, Leucine rich repeat	IPR001611, IPR001611, IPR013210; IPR001611, IPR013210, IPR001611	Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat
hsd_id_Theobroma_cacao_3043	XP_017979641.1; XP_017980108.1	117; 127	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_3044	XP_017979672.1; XP_017979691.1	657; 620	Pfam	PF12796, PF13962; PF12796, PF13962	Ankyrin repeats (3 copies), Domain of unknown function; Ankyrin repeats (3 copies), Domain of unknown function	IPR020683, IPR026961; IPR020683, IPR026961	Ankyrin repeat-containing domain, PGG domain; Ankyrin repeat-containing domain, PGG domain
hsd_id_Theobroma_cacao_3045	XP_017979764.1; XP_017980403.1	282; 194	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_3046	XP_017979768.1; XP_017980077.1; XP_017979775.1; XP_017979769.1; XP_017980076.1	958; 986; 998; 999; 1025	Pfam	PF00560, PF08263, PF13855; PF00560, PF08263, PF13855; PF00560, PF13855, PF08263; PF00560, PF08263, PF13855; PF13855, PF00560, PF08263	Leucine Rich Repeat, Leucine rich repeat N-terminal domain, Leucine rich repeat; Leucine Rich Repeat, Leucine rich repeat N-terminal domain, Leucine rich repeat; Leucine Rich Repeat, Leucine rich repeat, Leucine rich repeat N-terminal domain; Leucine Rich Repeat, Leucine rich repeat N-terminal domain, Leucine rich repeat; Leucine rich repeat, Leucine Rich Repeat, Leucine rich repeat N-terminal domain	IPR001611, IPR013210, IPR001611; IPR001611, IPR013210, IPR001611; IPR001611, IPR001611, IPR013210; IPR001611, IPR013210, IPR001611; IPR001611, IPR001611, IPR013210	Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type; Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type
hsd_id_Theobroma_cacao_3047	XP_017979816.1; XP_017980340.1	603; 699	Pfam	PF04578, PF13968; PF13968, PF04578	Protein of unknown function, DUF594, Domain of unknown function (DUF4220); Domain of unknown function (DUF4220), Protein of unknown function, DUF594	IPR007658, IPR025315; IPR025315, IPR007658	Protein of unknown function DUF594, Domain of unknown function DUF4220; Domain of unknown function DUF4220, Protein of unknown function DUF594
hsd_id_Theobroma_cacao_3048	XP_017979823.1; XP_017980271.1; XP_017980281.1; XP_017980297.1	1468; 1425; 1403; 1356	Pfam	PF18052, PF00931; PF00931, PF18052; PF00931, PF18052; PF00931, PF18052	Rx N-terminal domain, NB-ARC domain; NB-ARC domain, Rx N-terminal domain; NB-ARC domain, Rx N-terminal domain; NB-ARC domain, Rx N-terminal domain	IPR041118, IPR002182; IPR002182, IPR041118; IPR002182, IPR041118; IPR002182, IPR041118	Rx, N-terminal, NB-ARC; NB-ARC, Rx, N-terminal; NB-ARC, Rx, N-terminal; NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_3049	XP_017979825.1; XP_017979827.1	175; 244	Pfam	PF03587; PF03587	EMG1/NEP1 methyltransferase; EMG1/NEP1 methyltransferase	IPR005304; IPR005304	Ribosomal biogenesis, methyltransferase, EMG1/NEP1; Ribosomal biogenesis, methyltransferase, EMG1/NEP1
hsd_id_Theobroma_cacao_3050	XP_017979845.1; XP_017979846.1	933; 997	Pfam	PF08263, PF00560, PF13855; PF00560, PF08263, PF13855	Leucine rich repeat N-terminal domain, Leucine Rich Repeat, Leucine rich repeat; Leucine Rich Repeat, Leucine rich repeat N-terminal domain, Leucine rich repeat	IPR013210, IPR001611, IPR001611; IPR001611, IPR013210, IPR001611	Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat, Leucine-rich repeat; Leucine-rich repeat, Leucine-rich repeat-containing N-terminal, plant-type, Leucine-rich repeat
hsd_id_Theobroma_cacao_3051	XP_017979913.1; XP_017979915.1; XP_017980559.1	768; 737; 767	Pfam	PF07714, PF11883, PF08276, PF00954, PF01453; PF07714, PF01453, PF08276, PF00954, PF11883; PF00954, PF08276, PF11883, PF07714, PF01453	Protein tyrosine and serine/threonine kinase, Domain of unknown function (DUF3403), PAN-like domain, S-locus glycoprotein domain, D-mannose binding lectin; Protein tyrosine and serine/threonine kinase, D-mannose binding lectin, PAN-like domain, S-locus glycoprotein domain, Domain of unknown function (DUF3403); S-locus glycoprotein domain, PAN-like domain, Domain of unknown function (DUF3403), Protein tyrosine and serine/threonine kinase, D-mannose binding lectin	IPR001245, IPR021820, IPR003609, IPR000858, IPR001480; IPR001245, IPR001480, IPR003609, IPR000858, IPR021820; IPR000858, IPR003609, IPR021820, IPR001245, IPR001480	Serine-threonine/tyrosine-protein kinase, catalytic domain, S-locus receptor kinase, C-terminal, PAN/Apple domain, S-locus glycoprotein domain, Bulb-type lectin domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, Bulb-type lectin domain, PAN/Apple domain, S-locus glycoprotein domain, S-locus receptor kinase, C-terminal; S-locus glycoprotein domain, PAN/Apple domain, S-locus receptor kinase, C-terminal, Serine-threonine/tyrosine-protein kinase, catalytic domain, Bulb-type lectin domain
hsd_id_Theobroma_cacao_3052	XP_017979915.1; XP_017985303.1	737; 825	Pfam	PF07714, PF01453, PF08276, PF00954, PF11883; PF11883, PF07714, PF00954, PF08276, PF01453	Protein tyrosine and serine/threonine kinase, D-mannose binding lectin, PAN-like domain, S-locus glycoprotein domain, Domain of unknown function (DUF3403); Domain of unknown function (DUF3403), Protein tyrosine and serine/threonine kinase, S-locus glycoprotein domain, PAN-like domain, D-mannose binding lectin	IPR001245, IPR001480, IPR003609, IPR000858, IPR021820; IPR021820, IPR001245, IPR000858, IPR003609, IPR001480	Serine-threonine/tyrosine-protein kinase, catalytic domain, Bulb-type lectin domain, PAN/Apple domain, S-locus glycoprotein domain, S-locus receptor kinase, C-terminal; S-locus receptor kinase, C-terminal, Serine-threonine/tyrosine-protein kinase, catalytic domain, S-locus glycoprotein domain, PAN/Apple domain, Bulb-type lectin domain
hsd_id_Theobroma_cacao_3053	XP_017979918.1; XP_017985386.1	229; 215	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_3054	XP_017979986.1; XP_017980128.1; XP_017980127.1	819; 818; 819	Pfam	PF08276, PF00954, PF07714, PF01453, PF11883; PF00954, PF01453, PF08276, PF11883, PF07714; PF07714, PF00954, PF01453, PF08276	PAN-like domain, S-locus glycoprotein domain, Protein tyrosine and serine/threonine kinase, D-mannose binding lectin, Domain of unknown function (DUF3403); S-locus glycoprotein domain, D-mannose binding lectin, PAN-like domain, Domain of unknown function (DUF3403), Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase, S-locus glycoprotein domain, D-mannose binding lectin, PAN-like domain	IPR003609, IPR000858, IPR001245, IPR001480, IPR021820; IPR000858, IPR001480, IPR003609, IPR021820, IPR001245; IPR001245, IPR000858, IPR001480, IPR003609	PAN/Apple domain, S-locus glycoprotein domain, Serine-threonine/tyrosine-protein kinase, catalytic domain, Bulb-type lectin domain, S-locus receptor kinase, C-terminal; S-locus glycoprotein domain, Bulb-type lectin domain, PAN/Apple domain, S-locus receptor kinase, C-terminal, Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain, S-locus glycoprotein domain, Bulb-type lectin domain, PAN/Apple domain
hsd_id_Theobroma_cacao_3055	XP_017980031.1; XP_017985245.1; XP_017980031.1; XP_017985245.1; XP_017974488.1	192; 196; 192; 196; 212	Pfam	; ; ; ; 	; ; ; ; 	; ; ; ; 	; ; ; ; 
hsd_id_Theobroma_cacao_3056	XP_017980125.1; XP_017980693.1	408; 392	Pfam	PF00069; PF00069	Protein kinase domain; Protein kinase domain	IPR000719; IPR000719	Protein kinase domain; Protein kinase domain
hsd_id_Theobroma_cacao_3057	XP_017980401.1; XP_017984359.1; XP_017984351.1; XP_017984347.1	188; 170; 169; 169	Pfam	PF02365; PF02365; PF02365; PF02365	No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein; No apical meristem (NAM) protein	IPR003441; IPR003441; IPR003441; IPR003441	NAC domain; NAC domain; NAC domain; NAC domain
hsd_id_Theobroma_cacao_3058	XP_017980491.1; XP_017980494.1; XP_017980558.1	863; 824; 831	Pfam	PF08276, PF01453, PF07714, PF11883, PF00954; PF01453, PF07714, PF08276, PF00954, PF11883; PF11883, PF07714, PF08276, PF01453, PF00954	PAN-like domain, D-mannose binding lectin, Protein tyrosine and serine/threonine kinase, Domain of unknown function (DUF3403), S-locus glycoprotein domain; D-mannose binding lectin, Protein tyrosine and serine/threonine kinase, PAN-like domain, S-locus glycoprotein domain, Domain of unknown function (DUF3403); Domain of unknown function (DUF3403), Protein tyrosine and serine/threonine kinase, PAN-like domain, D-mannose binding lectin, S-locus glycoprotein domain	IPR003609, IPR001480, IPR001245, IPR021820, IPR000858; IPR001480, IPR001245, IPR003609, IPR000858, IPR021820; IPR021820, IPR001245, IPR003609, IPR001480, IPR000858	PAN/Apple domain, Bulb-type lectin domain, Serine-threonine/tyrosine-protein kinase, catalytic domain, S-locus receptor kinase, C-terminal, S-locus glycoprotein domain; Bulb-type lectin domain, Serine-threonine/tyrosine-protein kinase, catalytic domain, PAN/Apple domain, S-locus glycoprotein domain, S-locus receptor kinase, C-terminal; S-locus receptor kinase, C-terminal, Serine-threonine/tyrosine-protein kinase, catalytic domain, PAN/Apple domain, Bulb-type lectin domain, S-locus glycoprotein domain
hsd_id_Theobroma_cacao_3059	XP_017980494.1; XP_017980558.1; XP_017985303.1	824; 831; 825	Pfam	PF01453, PF07714, PF08276, PF00954, PF11883; PF11883, PF07714, PF08276, PF01453, PF00954; PF11883, PF07714, PF00954, PF08276, PF01453	D-mannose binding lectin, Protein tyrosine and serine/threonine kinase, PAN-like domain, S-locus glycoprotein domain, Domain of unknown function (DUF3403); Domain of unknown function (DUF3403), Protein tyrosine and serine/threonine kinase, PAN-like domain, D-mannose binding lectin, S-locus glycoprotein domain; Domain of unknown function (DUF3403), Protein tyrosine and serine/threonine kinase, S-locus glycoprotein domain, PAN-like domain, D-mannose binding lectin	IPR001480, IPR001245, IPR003609, IPR000858, IPR021820; IPR021820, IPR001245, IPR003609, IPR001480, IPR000858; IPR021820, IPR001245, IPR000858, IPR003609, IPR001480	Bulb-type lectin domain, Serine-threonine/tyrosine-protein kinase, catalytic domain, PAN/Apple domain, S-locus glycoprotein domain, S-locus receptor kinase, C-terminal; S-locus receptor kinase, C-terminal, Serine-threonine/tyrosine-protein kinase, catalytic domain, PAN/Apple domain, Bulb-type lectin domain, S-locus glycoprotein domain; S-locus receptor kinase, C-terminal, Serine-threonine/tyrosine-protein kinase, catalytic domain, S-locus glycoprotein domain, PAN/Apple domain, Bulb-type lectin domain
hsd_id_Theobroma_cacao_3060	XP_017980503.1; XP_017980505.1; XP_017980504.1	812; 807; 808	Pfam	PF01453, PF07714, PF00954, PF08276; PF00954, PF01453, PF07714, PF08276; PF08276, PF07714, PF00954, PF01453	D-mannose binding lectin, Protein tyrosine and serine/threonine kinase, S-locus glycoprotein domain, PAN-like domain; S-locus glycoprotein domain, D-mannose binding lectin, Protein tyrosine and serine/threonine kinase, PAN-like domain; PAN-like domain, Protein tyrosine and serine/threonine kinase, S-locus glycoprotein domain, D-mannose binding lectin	IPR001480, IPR001245, IPR000858, IPR003609; IPR000858, IPR001480, IPR001245, IPR003609; IPR003609, IPR001245, IPR000858, IPR001480	Bulb-type lectin domain, Serine-threonine/tyrosine-protein kinase, catalytic domain, S-locus glycoprotein domain, PAN/Apple domain; S-locus glycoprotein domain, Bulb-type lectin domain, Serine-threonine/tyrosine-protein kinase, catalytic domain, PAN/Apple domain; PAN/Apple domain, Serine-threonine/tyrosine-protein kinase, catalytic domain, S-locus glycoprotein domain, Bulb-type lectin domain
hsd_id_Theobroma_cacao_3061	XP_017980982.1; XP_017982318.1; XP_017982302.1; XP_017985363.1	180; 160; 170; 216	Pfam	PF13456; PF13456; PF13456; PF13456	Reverse transcriptase-like; Reverse transcriptase-like; Reverse transcriptase-like; Reverse transcriptase-like	IPR002156; IPR002156; IPR002156; IPR002156	Ribonuclease H domain; Ribonuclease H domain; Ribonuclease H domain; Ribonuclease H domain
hsd_id_Theobroma_cacao_3062	XP_017981650.1; XP_017981866.1; XP_017981654.1	821; 782; 772	Pfam	PF00933, PF01915, PF14310; PF00933, PF01915, PF14310; PF01915, PF00933, PF14310	Glycosyl hydrolase family 3 N terminal domain, Glycosyl hydrolase family 3 C-terminal domain, Fibronectin type III-like domain; Glycosyl hydrolase family 3 N terminal domain, Glycosyl hydrolase family 3 C-terminal domain, Fibronectin type III-like domain; Glycosyl hydrolase family 3 C-terminal domain, Glycosyl hydrolase family 3 N terminal domain, Fibronectin type III-like domain	IPR001764, IPR002772, IPR026891; IPR001764, IPR002772, IPR026891; IPR002772, IPR001764, IPR026891	Glycoside hydrolase, family 3, N-terminal, Glycoside hydrolase family 3 C-terminal domain, Fibronectin type III-like domain; Glycoside hydrolase, family 3, N-terminal, Glycoside hydrolase family 3 C-terminal domain, Fibronectin type III-like domain; Glycoside hydrolase family 3 C-terminal domain, Glycoside hydrolase, family 3, N-terminal, Fibronectin type III-like domain
hsd_id_Theobroma_cacao_3063	XP_017981940.1; XP_017982562.1	772; 766	Pfam	PF07714, PF00704; PF00704, PF07714	Protein tyrosine and serine/threonine kinase, Glycosyl hydrolases family 18; Glycosyl hydrolases family 18, Protein tyrosine and serine/threonine kinase	IPR001245, IPR001223; IPR001223, IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain, Glycoside hydrolase family 18, catalytic domain; Glycoside hydrolase family 18, catalytic domain, Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_3064	XP_017982359.1; XP_017982375.1	245; 230	Pfam	; 	; 	; 	; 
hsd_id_Theobroma_cacao_3065	XP_017982677.1; XP_017983882.1	732; 717	Pfam	PF00520, PF00027; PF00520, PF00027	Ion transport protein, Cyclic nucleotide-binding domain; Ion transport protein, Cyclic nucleotide-binding domain	IPR005821, IPR000595; IPR005821, IPR000595	Ion transport domain, Cyclic nucleotide-binding domain; Ion transport domain, Cyclic nucleotide-binding domain
hsd_id_Theobroma_cacao_3066	XP_017982780.1; XP_017983646.1	667; 587	Pfam	PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_3067	XP_017983024.1; XP_017983025.1	734; 729	Pfam	PF00501; PF00501	AMP-binding enzyme; AMP-binding enzyme	IPR000873; IPR000873	AMP-dependent synthetase/ligase; AMP-dependent synthetase/ligase
hsd_id_Theobroma_cacao_3068	XP_017983032.1; XP_017983395.1	798; 799	Pfam	PF00582, PF00069; PF00582, PF00069	Universal stress protein family, Protein kinase domain; Universal stress protein family, Protein kinase domain	IPR006016, IPR000719; IPR006016, IPR000719	UspA, Protein kinase domain; UspA, Protein kinase domain
hsd_id_Theobroma_cacao_3069	XP_017983393.1; XP_007032291.2; XP_007012630.1	451; 422; 448	Pfam	PF07714; PF07714; PF07714	Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase; Protein tyrosine and serine/threonine kinase	IPR001245; IPR001245; IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain; Serine-threonine/tyrosine-protein kinase, catalytic domain
hsd_id_Theobroma_cacao_3070	XP_017983588.1; XP_007030571.1	303; 345	Pfam	PF00010; PF00010	Helix-loop-helix DNA-binding domain; Helix-loop-helix DNA-binding domain	IPR011598; IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain; Myc-type, basic helix-loop-helix (bHLH) domain
hsd_id_Theobroma_cacao_3071	XP_017984269.1; XP_017984858.1	394; 393	Pfam	PF13637, PF12796, PF13962; PF12796, PF13637, PF13962	Ankyrin repeats (many copies), Ankyrin repeats (3 copies), Domain of unknown function; Ankyrin repeats (3 copies), Ankyrin repeats (many copies), Domain of unknown function	-, IPR020683, IPR026961; IPR020683, -, IPR026961	-, Ankyrin repeat-containing domain, PGG domain; Ankyrin repeat-containing domain, -, PGG domain
hsd_id_Theobroma_cacao_3072	XP_017984378.1; XP_017984595.1; XP_017984612.1	1470; 1462; 1414	Pfam	PF00931, PF18052; PF18052, PF00931; PF18052, PF00931	NB-ARC domain, Rx N-terminal domain; Rx N-terminal domain, NB-ARC domain; Rx N-terminal domain, NB-ARC domain	IPR002182, IPR041118; IPR041118, IPR002182; IPR041118, IPR002182	NB-ARC, Rx, N-terminal; Rx, N-terminal, NB-ARC; Rx, N-terminal, NB-ARC
hsd_id_Theobroma_cacao_3073	XP_017984547.1; XP_017984549.1	1270; 1201	Pfam	PF00931, PF18052; PF00931, PF18052	NB-ARC domain, Rx N-terminal domain; NB-ARC domain, Rx N-terminal domain	IPR002182, IPR041118; IPR002182, IPR041118	NB-ARC, Rx, N-terminal; NB-ARC, Rx, N-terminal
hsd_id_Theobroma_cacao_3074	XP_017985252.1; XP_017985373.1	441; 368	Pfam	PF13962, PF12796; PF13962, PF12796	Domain of unknown function, Ankyrin repeats (3 copies); Domain of unknown function, Ankyrin repeats (3 copies)	IPR026961, IPR020683; IPR026961, IPR020683	PGG domain, Ankyrin repeat-containing domain; PGG domain, Ankyrin repeat-containing domain